Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029402 Camellia sinensis var. sinensis HOM05D007288 ORTHO05D009200 9.7e-164 580.1 297 100.0
CSS0002437 Camellia sinensis var. sinensis HOM05D007288 ORTHO05D009200 2.9e-131 472.2 297 84.2
Actinidia00813 Actinidia chinensis HOM05D007288 ORTHO05D009200 1.5e-119 433.3 297 76.8
Cfa011389 Carpinus fangiana HOM05D007288 ORTHO05D009200 4.7e-110 401.7 297 69.7
Haze_23956 Corylus avellana HOM05D007288 ORTHO05D009200 3.4e-108 395.6 329 64.1
TAR623G1771 Trochodendron aralioides HOM05D007288 ORTHO05D009200 4.9e-107 391.7 299 69.2
QL01p035799 Quercus lobata HOM05D007288 ORTHO05D009200 3.2e-106 389.0 297 68.4
Manes.04G027100 Manihot esculenta HOM05D007288 ORTHO05D009200 1.2e-105 387.1 297 66.0
GSVIVG01025099001 Vitis vinifera HOM05D007288 ORTHO05D009200 1.6e-105 386.7 297 66.7
Gohir.D07G098000 Gossypium hirsutum HOM05D007288 ORTHO05D009200 2.7e-105 386.0 297 68.0
CiPaw.13G104600 Carya illinoinensis HOM05D007288 ORTHO05D009200 6.0e-105 384.8 297 66.7
Gorai.001G105400 Gossypium raimondii HOM05D007288 ORTHO05D009200 1.0e-104 384.0 297 67.7
Lj2A1042T48 Lonicera japonica HOM05D007288 ORTHO05D009200 1.0e-104 384.0 297 68.0
RcHm_v2.0_Chr5g0061521 Rosa chinensis HOM05D007288 ORTHO05D009200 4.3e-103 378.6 297 66.3
Atru.chr3.3740 Acer truncatum HOM05D007288 ORTHO05D009200 5.6e-103 378.3 297 66.3
Thecc.09G336000 Theobroma cacao HOM05D007288 ORTHO05D009200 2.1e-102 376.3 297 67.3
Oeu058505.2 Olea europaea HOM05D007288 ORTHO05D009200 2.8e-102 375.9 297 65.0
Lsat_1_v5_gn_5_164600 Lactuca sativa HOM05D007288 ORTHO05D009200 1.8e-101 373.2 297 66.3
Solyc11g072610.3 Solanum lycopersicum HOM05D007288 ORTHO05D009200 3.1e-101 372.5 297 65.0
Sopen11g030260 Solanum pennellii HOM05D007288 ORTHO05D009200 4.0e-101 372.1 297 65.0
MD11G1120900 Malus domestica HOM05D007288 ORTHO05D009200 5.3e-101 371.7 297 64.3
Hma1.2p1_0861F.1_g229670 Hydrangea macrophylla HOM05D007288 ORTHO05D009200 1.5e-100 370.2 299 66.6
Hma1.2p1_0861F.1_g229675 Hydrangea macrophylla HOM05D007288 ORTHO05D009200 1.5e-100 370.2 299 66.6
FAN21G3325 Fragaria x ananassa HOM05D007288 ORTHO05D009200 2.0e-100 369.8 297 64.6
TWI75G0177 Tripterygium wilfordii HOM05D007288 ORTHO05D009200 2.0e-100 369.8 297 66.3
ClCG02G020790 Citrullus lanatus HOM05D007288 ORTHO05D009200 9.9e-100 367.5 297 63.3
FvH4_3g33990 Fragaria vesca HOM05D007288 ORTHO05D009200 1.7e-99 366.7 297 64.0
THA.LOC104800033 Tarenaya hassleriana HOM05D007288 ORTHO05D009200 1.1e-98 364.0 297 62.6
THA.LOC104815758 Tarenaya hassleriana HOM05D007288 ORTHO05D009200 1.1e-98 364.0 297 62.6
ECA248G2408 Erigeron canadensis HOM05D007288 ORTHO05D009200 1.9e-98 363.2 297 63.3
Psat5g276680 Pisum sativum HOM05D007288 ORTHO05D009200 3.2e-98 362.5 297 63.3
Sed0021724 Sechium edule HOM05D007288 ORTHO05D009200 4.2e-98 362.1 297 62.3
CARHR121570 Cardamine hirsuta HOM05D007288 ORTHO05D009200 3.5e-97 359.0 297 62.0
Thhalv10017710m.g Eutrema salsugineum HOM05D007288 ORTHO05D009200 7.8e-97 357.8 297 62.0
FAN16G0816 Fragaria x ananassa HOM05D007288 ORTHO05D009200 1.0e-96 357.5 297 63.3
PSO384G1093 Papaver somniferum HOM05D007288 ORTHO05D009200 1.3e-96 357.1 299 60.9
COL.COLO4_18386 Corchorus olitorius HOM05D007288 ORTHO05D009200 1.7e-96 356.7 320 60.0
CsaV3_6G021820 Cucumis sativus L. HOM05D007288 ORTHO05D009200 1.7e-96 356.7 297 61.3
Aqoxy4G03169 Aquilegia oxysepala HOM05D007288 ORTHO05D009200 3.9e-96 355.5 297 60.9
Carub.0004s0953 Capsella rubella HOM05D007288 ORTHO05D009200 3.9e-96 355.5 297 61.3
Medtr2g093050 Medicago truncatula HOM05D007288 ORTHO05D009200 3.9e-96 355.5 297 62.0
MSTRG.12620 Avicennia marina HOM05D007288 ORTHO05D009200 6.6e-96 354.8 297 63.0
Sc21g0000170 Simmondsia chinensis HOM05D007288 ORTHO05D009200 6.6e-96 354.8 297 62.0
Lalb_Chr14g0374871 Lupinus albus HOM05D007288 ORTHO05D009200 1.5e-95 353.6 297 62.0
Lj3g0012395 Lotus japonicus HOM05D007288 ORTHO05D009200 1.9e-95 353.2 297 61.3
AT2G28560 Arabidopsis thaliana HOM05D007288 ORTHO05D009200 2.5e-95 352.8 297 60.9
PSO339G6024 Papaver somniferum HOM05D007288 ORTHO05D009200 4.3e-95 352.1 299 60.2
BolC4t27295H Brassica oleracea HOM05D007288 ORTHO05D009200 7.3e-95 351.3 298 61.4
Sp4g11390 Schrenkiella parvula HOM05D007288 ORTHO05D009200 7.3e-95 351.3 299 60.9
Ca_01448_v3 Cicer arietinum L. HOM05D007288 ORTHO05D009200 9.6e-95 350.9 303 61.1
HanXRQChr15g0493521 Helianthus annuus HOM05D007288 ORTHO05D009200 1.3e-94 350.5 297 61.3
Eucgr.B02451 Eucalyptus grandis HOM05D007288 ORTHO05D009200 1.6e-94 350.1 297 62.3
arahy.Tifrunner.gnm1.ann1.A288I1 Arachis hypogaea HOM05D007288 ORTHO05D009200 2.1e-94 349.7 297 62.0
Cpa.g.sc139.41 Carica papaya HOM05D007288 ORTHO05D009200 2.8e-94 349.4 269 66.2
CANSAT54G2720 Cannabis sativa HOM05D007288 ORTHO05D009200 3.6e-94 349.0 297 62.0
FAN11G2413 Fragaria x ananassa HOM05D007288 ORTHO05D009200 4.8e-94 348.6 330 57.3
A04p21650 Brassica napus HOM05D007288 ORTHO05D009200 1.1e-93 347.4 298 60.7
Glyma.15G044300 Glycine max HOM05D007288 ORTHO05D009200 1.4e-93 347.1 297 63.0
SalBow3G3212 Salvia bowleyana HOM05D007288 ORTHO05D009200 1.4e-93 347.1 303 61.7
Hund08177 Selenicereus undatus HOM05D007288 ORTHO05D009200 1.4e-93 347.1 300 61.3
BcaB06g28228 Brassica carinata HOM05D007288 ORTHO05D009200 2.4e-93 346.3 298 60.7
BraA04t17729Z Brassica rapa HOM05D007288 ORTHO05D009200 2.4e-93 346.3 298 60.7
AUR62025046 Chenopodium quinoa HOM05D007288 ORTHO05D009200 3.1e-93 345.9 305 60.0
SGA_v2.0_scaffold146G36239 Striga asiatica HOM05D007288 ORTHO05D009200 3.1e-93 345.9 301 62.1
BcaC02g08159 Brassica carinata HOM05D007288 ORTHO05D009200 4.0e-93 345.5 298 60.4
C04p57770 Brassica napus HOM05D007288 ORTHO05D009200 4.0e-93 345.5 298 60.4
ATR0594G195 Amborella trichopoda HOM05D007288 ORTHO05D009200 5.3e-93 345.1 301 59.8
Cc01_g11850 Coffea canephora HOM05D007288 ORTHO05D009200 1.3e-91 340.5 302 61.3
Gohir.A07G093400 Gossypium hirsutum HOM05D007288 ORTHO05D009200 4.9e-91 338.6 265 66.8
Prupe.6G090900 Prunus persica HOM05D007288 ORTHO05D009200 6.4e-91 338.2 267 64.4
vmacro14486 Vaccinium macrocarpon HOM05D007288 ORTHO05D009200 2.4e-90 336.3 297 64.3
Ciclev10028721m.g Citrus clementina HOM05D007288 ORTHO05D009200 2.1e-89 333.2 297 59.6
arahy.Tifrunner.gnm1.ann1.93BU3Z Arachis hypogaea HOM05D007288 ORTHO05D009200 1.5e-87 327.0 348 52.9
PGR102G2823 Punica granatum HOM05D007288 ORTHO05D009200 5.6e-87 325.1 268 64.2
Nn2g10628 Nelumbo nucifera HOM05D007288 ORTHO05D009200 2.1e-86 323.2 271 60.9
Dinv32816 Davidia involucrata HOM05D007288 ORTHO05D009200 6.2e-86 321.6 259 66.4
MELO3C025727.2 Cucumis melo HOM05D007288 ORTHO05D009200 3.1e-85 319.3 311 55.0
VMungo1080G1892 Vigna mungo HOM05D007288 ORTHO05D009200 2.0e-84 316.6 272 62.9
unitig_61.g26166 Utricularia gibba HOM05D007288 ORTHO05D009200 2.6e-84 316.2 313 55.3
Peaxi162Scf00616g00015 Petunia axillaris HOM05D007288 ORTHO05D009200 1.8e-80 303.5 287 57.1
Os05g0121700 Oryza sativa ssp. japonica HOM05D007288 ORTHO05D009200 3.8e-75 285.8 299 53.8
CDE04G2273 Ceratophyllum demersum HOM05D007288 ORTHO05D009200 7.4e-71 271.6 292 54.1
HPP92_001033 Vanilla planifolia HOM05D007288 ORTHO05D009200 1.4e-69 267.3 298 50.7
Phvul.L000462 Phaseolus vulgaris HOM05D007288 ORTHO05D009200 1.9e-66 256.9 231 61.9
Nitab4.5_0004512g0010 Nicotiana tabacum HOM05D007288 ORTHO05D009200 3.2e-66 256.1 277 53.1
Nitab4.5_0014946g0010 Nicotiana tabacum HOM05D007288 ORTHO05D009200 2.3e-64 250.0 277 53.1
PGSC0003DMG401025391 Solanum tuberosum HOM05D007288 ORTHO05D009200 1.1e-58 231.1 162 69.8
Zm00001eb355220 Zea mays HOM05D007288 ORTHO05D009200 1.4e-58 230.7 281 48.4
Ah.01g002370 Amaranthus hybridus HOM05D007288 ORTHO05D009200 1.1e-55 221.1 252 50.8
Psat2g091240 Pisum sativum HOM05D007288 ORTHO05D009200 1.1e-50 204.5 181 61.3
Pp3c25_15290 Physcomitrium patens HOM05D007288 ORTHO05D009200 4.2e-50 202.6 304 40.1
TPR.G11620 Trifolium pratense HOM05D007288 ORTHO05D009200 4.7e-49 199.1 179 60.9
SEGI_21779 Sequoiadendron giganteum HOM05D007288 ORTHO05D009200 8.2e-46 188.3 223 46.6
AagrBONN_evm.TU.Sc2ySwM_368.1709 Anthoceros agrestis HOM05D007288 ORTHO05D009200 1.8e-45 187.2 295 39.7
Mapoly0007s0061 Marchantia polymorpha HOM05D007288 ORTHO05D009200 1.2e-44 184.5 306 36.3
TPR.G11590 Trifolium pratense HOM05D007288 ORTHO05D009200 8.3e-38 161.8 116 65.5
CBR_g23396 Chara braunii HOM05D007288 ORTHO05D009200 7.0e-37 158.7 324 33.3
CAN.G84.32 Capsicum annuum HOM05D007288 ORTHO05D009200 9.8e-31 138.3 96 66.7
DCAR_005289 Daucus carota HOM05D007288 ORTHO05D009200 9.1e-29 131.7 115 60.0
Aqoxy7G02469 Aquilegia oxysepala HOM05D007288 ORTHO05D009200 1.0e-27 128.3 99 59.6
PRCOL_00002179 Prasinoderma coloniale HOM05D007288 ORTHO05D009200 4.1e-21 106.3 310 28.7
Cre01.g025300 Chlamydomonas reinhardtii HOM05D007288 ORTHO05D009200 2.9e-19 100.1 330 27.6
MCO10G289 Micromonas commoda HOM05D007288 ORTHO05D009200 4.7e-17 92.8 240 30.8
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.1e-16 90.1 71 59.2
QL02p097661 Quercus lobata HOM05D001363 ORTHO05D006255 6.4e-14 82.4 221 33.5
Nn4g25076 Nelumbo nucifera HOM05D000414 ORTHO05D009653 4.1e-13 79.7 106 42.5
Pp3c5_12400 Physcomitrium patens HOM05D001546 ORTHO05D008648 1.2e-12 78.2 262 25.6
AagrBONN_evm.TU.Sc2ySwM_228.594 Anthoceros agrestis HOM05D001546 ORTHO05D008648 1.6e-12 77.8 260 27.7
Cfa013508 Carpinus fangiana HOM05D001363 ORTHO05D006255 4.6e-12 76.3 221 33.0
CAN.G295.12 Capsicum annuum HOM05D001546 ORTHO05D008648 6.0e-12 75.9 287 24.4
AUR62013651 Chenopodium quinoa HOM05D001546 ORTHO05D002908 6.0e-12 75.9 266 26.7
Haze_22100 Corylus avellana HOM05D001363 ORTHO05D006255 6.0e-12 75.9 227 32.6
SEGI_12949 Sequoiadendron giganteum HOM05D007288 ORTHO05D009200 1.0e-11 75.1 69 53.6
Aa31LG1G26810 Aethionema arabicum HOM05D001546 ORTHO05D008648 1.3e-11 74.7 288 24.3
Mapoly0114s0015 Marchantia polymorpha HOM05D001546 ORTHO05D008648 1.7e-11 74.3 274 23.7
Lj9P685T22 Lonicera japonica HOM05D001363 ORTHO05D006255 2.3e-11 73.9 215 30.2
Oeu047705.1 Olea europaea HOM05D007288 ORTHO05D009200 3.0e-11 73.6 41 80.5
PGSC0003DMG400007020 Solanum tuberosum HOM05D001546 ORTHO05D008648 6.6e-11 72.4 277 24.5
Solyc07g055170.1 Solanum lycopersicum HOM05D001363 ORTHO05D006255 8.6e-11 72.0 260 31.2
ATR0757G033 Amborella trichopoda HOM05D001546 ORTHO05D008648 1.1e-10 71.6 283 26.1
MSTRG.20739 Avicennia marina HOM05D001546 ORTHO05D008648 1.1e-10 71.6 285 25.6
Gohir.A05G004600 Gossypium hirsutum HOM05D001363 ORTHO05D006255 1.5e-10 71.2 223 31.4
Sp4g27300 Schrenkiella parvula HOM05D001546 ORTHO05D008648 1.5e-10 71.2 279 25.4
SpUn0031_0020 Schrenkiella parvula HOM05D001546 ORTHO05D008648 1.5e-10 71.2 279 25.4
BcaC01g06495 Brassica carinata HOM05D001363 ORTHO05D006255 1.9e-10 70.9 233 30.9
MD14G1172600 Malus domestica HOM05D001363 ORTHO05D006255 1.9e-10 70.9 223 30.0
CiPaw.08G036500 Carya illinoinensis HOM05D001363 ORTHO05D006255 2.5e-10 70.5 221 32.1
CARHR271240 Cardamine hirsuta HOM05D001363 ORTHO05D006255 3.3e-10 70.1 228 28.9
DCAR_014703 Daucus carota HOM05D001363 ORTHO05D006255 3.3e-10 70.1 235 31.9
Oeu056514.1 Olea europaea HOM05D001363 ORTHO05D006255 4.3e-10 69.7 264 28.8
Sopen05g029430 Solanum pennellii HOM05D001546 ORTHO05D008648 4.3e-10 69.7 277 23.8
Thecc.09G173000 Theobroma cacao HOM05D001363 ORTHO05D006255 4.3e-10 69.7 225 29.3
Gohir.D05G005500 Gossypium hirsutum HOM05D001363 ORTHO05D006255 5.6e-10 69.3 223 30.9
Gorai.009G005300 Gossypium raimondii HOM05D001363 ORTHO05D006255 5.6e-10 69.3 223 30.9
GSVIVG01029206001 Vitis vinifera HOM05D001363 ORTHO05D006255 5.6e-10 69.3 209 31.6
C03p14990 Brassica napus HOM05D001363 ORTHO05D006255 7.3e-10 68.9 278 28.8
CARHR140490 Cardamine hirsuta HOM05D001546 ORTHO05D008648 7.3e-10 68.9 270 24.4
TAR625G1447 Trochodendron aralioides HOM05D001363 ORTHO05D006255 7.3e-10 68.9 223 31.8
Aa31LG3G13330 Aethionema arabicum HOM05D001363 ORTHO05D006255 9.5e-10 68.6 240 28.3
BcaB02g08944 Brassica carinata HOM05D001546 ORTHO05D002908 9.5e-10 68.6 270 24.4
BcaC01g06488 Brassica carinata HOM05D001363 ORTHO05D006255 9.5e-10 68.6 227 30.8
BolC3t13941H Brassica oleracea HOM05D001363 ORTHO05D006255 9.5e-10 68.6 233 30.5
Sp6g19160 Schrenkiella parvula HOM05D001363 ORTHO05D006255 9.5e-10 68.6 225 30.2
Carub.0004s2788 Capsella rubella HOM05D001546 ORTHO05D008648 1.6e-09 67.8 270 24.4
Nitab4.5_0003912g0060 Nicotiana tabacum HOM05D001546 ORTHO05D008648 2.8e-09 67.0 285 26.0
BcaC02g12229 Brassica carinata HOM05D001546 ORTHO05D008648 3.6e-09 66.6 270 24.1
A05p05300 Brassica napus HOM05D001546 ORTHO05D008648 3.6e-09 66.6 270 24.1
C04p06210 Brassica napus HOM05D001546 ORTHO05D008648 3.6e-09 66.6 270 24.1
BraA05t19499Z Brassica rapa HOM05D001546 ORTHO05D008648 3.6e-09 66.6 270 24.1
Thhalv10015458m.g Eutrema salsugineum HOM05D001363 ORTHO05D006255 3.6e-09 66.6 243 26.7
Oeu002544.1 Olea europaea HOM05D001363 ORTHO05D006255 4.7e-09 66.2 217 30.4
Peaxi162Scf00959g00125 Petunia axillaris HOM05D001546 ORTHO05D008648 4.7e-09 66.2 285 25.6
Hund26352 Selenicereus undatus HOM05D001363 ORTHO05D006255 4.7e-09 66.2 232 28.4
A03p12830 Brassica napus HOM05D001363 ORTHO05D006255 6.2e-09 65.9 227 30.0
Sopen07g027050 Solanum pennellii HOM05D000134 ORTHO05D003318 6.2e-09 65.9 256 30.1
vmacro06016 Vaccinium macrocarpon HOM05D001363 ORTHO05D006255 6.2e-09 65.9 216 31.0
CSS0044369 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D006255 8.0e-09 65.5 227 32.2
BraA03t10591Z Brassica rapa HOM05D001363 ORTHO05D006255 1.1e-08 65.1 227 30.0
Dinv41718 Davidia involucrata HOM05D001694 ORTHO05D000248 1.1e-08 65.1 216 30.6
Oeu005800.1 Olea europaea HOM05D001546 ORTHO05D008648 1.1e-08 65.1 318 23.3
Peaxi162Scf00113g00112 Petunia axillaris HOM05D001363 ORTHO05D006255 1.1e-08 65.1 212 33.0
MD06G1167000 Malus domestica HOM05D001363 ORTHO05D006255 1.4e-08 64.7 223 28.7
TWI34G1409 Tripterygium wilfordii HOM05D001363 ORTHO05D006255 5.2e-08 62.8 275 25.8
Lsat_1_v5_gn_8_66820 Lactuca sativa HOM05D001363 ORTHO05D006255 8.9e-08 62.0 251 27.5
Nitab4.5_0001329g0130 Nicotiana tabacum HOM05D001546 ORTHO05D008648 8.9e-08 62.0 246 25.6
Migut.J01476 Erythranthe guttata HOM05D001363 ORTHO05D006255 1.2e-07 61.6 215 27.9
Peaxi162Scf00276g00065 Petunia axillaris HOM05D001363 ORTHO05D006255 1.2e-07 61.6 212 31.1
EL10Ac1g00872 Beta vulgaris HOM05D001546 ORTHO05D008648 1.5e-07 61.2 289 24.6
Ciclev10008928m.g Citrus clementina HOM05D001363 ORTHO05D006255 2.0e-07 60.8 249 26.5
PGR142G0790 Punica granatum HOM05D001363 ORTHO05D006255 2.0e-07 60.8 230 27.0
Cfa025564 Carpinus fangiana HOM05D001363 ORTHO05D006255 7.5e-07 58.9 305 27.5
Aqoxy2G00910 Aquilegia oxysepala HOM05D001363 ORTHO05D006255 1.3e-06 58.2 226 28.3
Rhsim03G0264200 Rhododendron simsii HOM05D001363 ORTHO05D006255 1.3e-06 58.2 214 30.4
EL10Ac7g17656 Beta vulgaris HOM05D001546 ORTHO05D008648 2.2e-06 57.4 130 33.1
Ca_19199_v3 Cicer arietinum L. HOM05D007197 ORTHO05D009064 2.2e-06 57.4 204 27.9
Sc08g0005330 Simmondsia chinensis HOM05D001363 ORTHO05D006255 3.7e-06 56.6 229 28.4


User provided reference genes

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