Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.5e-144 515.0 268 100.0
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 5.0e-143 511.1 268 99.3
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.0e-128 462.6 267 91.0
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 8.0e-125 450.7 270 87.8
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 8.3e-122 440.7 270 85.9
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 3.0e-119 432.2 275 81.1
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 8.0e-117 424.1 273 84.6
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 5.2e-116 421.4 276 80.8
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 8.9e-116 420.6 274 81.4
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.0e-115 419.5 272 82.4
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 2.0e-115 419.5 273 80.6
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 7.5e-115 417.5 267 83.9
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.9e-114 415.6 274 80.7
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.9e-114 415.6 269 82.9
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 8.3e-114 414.1 276 81.2
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.4e-113 412.5 275 82.2
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 2.4e-113 412.5 270 80.7
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 4.1e-113 411.8 276 80.1
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 5.4e-113 411.4 273 79.1
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.2e-113 410.6 277 79.8
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.2e-113 410.6 275 80.7
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.2e-112 410.2 274 81.8
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.6e-112 409.8 275 81.8
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 2.1e-112 409.5 273 80.6
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.1e-112 409.5 277 79.1
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.1e-112 409.5 277 79.1
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 2.1e-112 409.5 268 80.6
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 3.5e-112 408.7 274 80.3
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 6.0e-112 407.9 279 79.6
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 6.0e-112 407.9 281 79.4
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 7.8e-112 407.5 275 80.0
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.0e-111 407.1 271 80.4
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.3e-111 406.8 278 79.9
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.7e-111 406.4 267 79.8
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.9e-111 405.2 272 79.4
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 6.6e-111 404.4 271 78.2
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 6.6e-111 404.4 277 77.6
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 1.5e-110 403.3 278 78.8
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.5e-110 403.3 274 78.8
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 4.3e-110 401.7 275 79.3
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 4.3e-110 401.7 280 78.6
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 5.6e-110 401.4 272 79.8
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 5.6e-110 401.4 268 80.6
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 9.5e-110 400.6 272 79.8
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 9.5e-110 400.6 272 79.8
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 9.5e-110 400.6 272 79.8
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 9.5e-110 400.6 270 79.3
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 9.5e-110 400.6 280 78.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.6e-109 399.8 276 77.9
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.8e-109 399.1 274 79.6
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 3.6e-109 398.7 272 79.4
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 3.6e-109 398.7 277 77.6
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 4.7e-109 398.3 272 79.0
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 6.2e-109 397.9 275 78.9
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 6.2e-109 397.9 275 78.9
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 1.1e-108 397.1 272 80.9
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.4e-108 396.7 271 80.1
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 1.4e-108 396.7 272 79.4
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.4e-108 396.7 280 77.9
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.8e-108 396.4 270 79.3
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.3e-108 396.0 275 78.2
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.3e-108 396.0 272 78.7
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.0e-108 395.2 275 78.2
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 4.0e-108 395.2 273 78.8
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 6.8e-108 394.4 271 80.4
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 6.8e-108 394.4 271 80.4
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 1.2e-107 393.7 271 78.2
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.5e-107 393.3 275 76.0
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.0e-107 392.9 271 77.9
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.6e-107 392.5 272 78.7
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.6e-107 392.5 272 78.7
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 2.6e-107 392.5 272 79.8
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 78.7
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 3.4e-107 392.1 272 78.7
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 3.4e-107 392.1 268 78.4
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.4e-107 392.1 275 76.7
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 4.4e-107 391.7 272 79.8
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 5.8e-107 391.3 270 78.5
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 7.5e-107 391.0 278 77.3
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 7.5e-107 391.0 278 77.3
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.7e-106 389.8 276 79.3
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.7e-106 389.8 272 78.3
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 2.9e-106 389.0 260 78.8
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 4.9e-106 388.3 268 80.2
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.9e-106 388.3 275 77.1
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 4.9e-106 388.3 271 74.9
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.4e-105 386.7 272 77.2
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.9e-105 386.3 275 78.2
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 2.4e-105 386.0 273 78.0
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.4e-105 386.0 269 77.0
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 5.4e-105 384.8 281 75.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.4e-105 384.8 273 77.7
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 5.4e-105 384.8 270 78.5
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 7.1e-105 384.4 280 72.9
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 9.2e-105 384.0 273 75.5
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.6e-104 383.3 276 76.4
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 2.7e-104 382.5 272 77.2
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 4.6e-104 381.7 272 77.6
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 7.8e-104 380.9 273 76.6
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.0e-103 380.6 268 75.4
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 4.3e-102 375.2 273 76.6
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.2e-101 373.6 277 74.4
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.1e-101 372.9 271 75.6
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 4.7e-101 371.7 242 81.0
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 8.1e-101 370.9 234 82.5
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 1.1e-100 370.5 276 75.7
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.8e-100 369.8 276 76.4
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 3.1e-100 369.0 274 73.7
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 4.0e-100 368.6 272 76.5
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 5.2e-100 368.2 267 74.2
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 6.8e-100 367.9 275 75.6
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.0e-99 366.3 198 91.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 7.6e-99 364.4 274 74.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 4.9e-98 361.7 276 73.2
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 4.9e-98 361.7 287 72.1
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.0e-96 354.8 218 83.0
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.7e-90 336.7 193 87.0
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 2.8e-85 319.3 283 64.0
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.1e-84 317.4 278 63.3
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 6.9e-84 314.7 196 81.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.8e-83 311.6 240 73.3
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.2e-80 303.9 239 66.9
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 5.1e-79 298.5 169 88.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 8.7e-79 297.7 190 82.1
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.8e-69 266.2 193 77.2
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 4.5e-67 258.8 161 82.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 9.3e-65 251.1 134 94.0
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 2.1e-64 250.0 200 73.5
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 3.3e-62 242.7 161 74.5
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.1e-54 217.6 165 66.7
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.4e-49 200.7 272 51.5
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 4.2e-49 199.1 147 77.6
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 9.1e-44 181.4 124 74.2
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 8.5e-42 174.9 229 53.3
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 6.1e-40 168.7 96 84.4
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.1e-36 156.4 247 42.9
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.1e-36 154.8 247 42.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 5.2e-23 112.5 81 79.0
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 9.8e-22 108.2 109 62.4
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 9.2e-12 75.1 176 31.2
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 7.8e-11 72.0 175 30.3
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.0e-10 69.3 38 86.8
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.5e-09 67.0 38 86.8
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 4.0e-07 59.7 60 48.3
Pp3c7_6810 Physcomitrium patens HOM05D041339 ORTHO05D031170 1.5e-06 57.8 100 42.0
Pp3c11_21590 Physcomitrium patens HOM05D041339 ORTHO05D031170 2.6e-06 57.0 99 42.4


User provided reference genes

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