Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.0e-145 519.6 372 100.0
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.5e-140 501.5 372 93.3
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.1e-75 287.0 321 61.1
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.6e-68 262.3 400 58.5
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.8e-66 257.3 337 52.2
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 5.3e-66 255.8 328 49.7
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 6.4e-64 248.8 326 59.5
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.4e-63 247.7 330 53.3
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 9.3e-63 245.0 341 50.1
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.6e-62 244.2 338 50.3
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 1.0e-61 241.5 332 57.2
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.3e-61 241.1 327 53.5
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 3.9e-61 239.6 329 46.5
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.5e-60 237.7 340 55.0
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.9e-60 237.3 338 53.8
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.9e-60 237.3 325 52.6
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.9e-60 237.3 329 55.0
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 4.3e-60 236.1 342 50.3
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 4.8e-59 232.6 330 55.5
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 3.1e-58 229.9 379 63.1
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.1e-58 229.9 347 53.3
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 1.2e-57 228.0 415 51.8
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.2e-57 228.0 330 59.4
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 1.5e-57 227.6 363 52.3
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 2.6e-57 226.9 331 55.9
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.4e-57 226.5 333 48.9
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 9.9e-57 224.9 324 54.6
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 1.7e-56 224.2 327 57.5
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 1.7e-56 224.2 340 62.9
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.7e-56 224.2 332 52.7
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 4.9e-56 222.6 388 50.3
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 6.4e-56 222.2 340 61.5
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 6.4e-56 222.2 338 54.7
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 5.5e-55 219.2 341 51.6
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 7.1e-55 218.8 349 54.7
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 9.3e-55 218.4 342 48.2
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.2e-54 218.0 323 49.8
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.6e-54 217.6 322 53.1
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 6.0e-54 215.7 352 54.3
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 6.0e-54 215.7 355 55.8
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 1.0e-53 214.9 372 56.5
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.0e-53 214.9 362 56.6
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.8e-53 214.2 412 57.3
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 3.9e-53 213.0 339 45.7
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 3.9e-53 213.0 335 60.9
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 5.1e-53 212.6 376 41.2
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 8.7e-53 211.8 322 52.2
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 8.7e-53 211.8 322 52.5
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 1.1e-52 211.5 352 51.1
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 1.1e-52 211.5 328 57.3
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.5e-52 211.1 322 52.2
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 1.5e-52 211.1 362 43.1
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.9e-52 210.7 355 51.5
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.9e-52 210.7 372 50.0
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 2.5e-52 210.3 395 51.6
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 3.3e-52 209.9 338 49.4
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 5.6e-52 209.1 341 44.0
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 5.6e-52 209.1 338 49.7
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 7.4e-52 208.8 338 48.2
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 9.6e-52 208.4 326 53.4
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 9.6e-52 208.4 316 47.5
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 3.7e-51 206.5 276 51.4
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 6.2e-51 205.7 331 48.9
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.4e-50 204.5 324 47.2
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.8e-50 204.1 346 56.4
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.8e-50 204.1 346 51.2
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 1.8e-50 204.1 388 49.0
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 6.9e-50 202.2 343 44.3
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 9.0e-50 201.8 355 56.6
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.0e-49 200.7 347 49.9
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 3.4e-49 199.9 368 43.5
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 3.4e-49 199.9 358 54.5
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 5.8e-49 199.1 324 46.9
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 7.6e-49 198.7 327 43.4
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.3e-48 198.0 412 50.2
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.3e-48 198.0 364 52.7
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 2.2e-48 197.2 330 47.6
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.2e-48 197.2 394 51.3
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 6.5e-48 195.7 361 45.4
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.1e-47 194.9 401 42.1
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.4e-47 194.5 364 49.7
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 3.2e-47 193.4 310 51.6
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 5.5e-47 192.6 320 45.9
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 7.1e-47 192.2 341 54.0
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 9.3e-47 191.8 329 47.1
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 1.2e-46 191.4 335 48.4
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.2e-46 191.4 351 54.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-46 191.0 398 47.2
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 2.1e-46 190.7 333 53.5
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 2.7e-46 190.3 345 51.6
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 6.0e-46 189.1 394 40.1
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 7.9e-46 188.7 376 49.7
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.0e-45 188.3 240 57.5
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 5.1e-45 186.0 334 49.4
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 6.7e-45 185.7 383 42.8
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 8.7e-45 185.3 333 54.1
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.5e-44 184.5 359 49.9
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 1.9e-44 184.1 332 50.9
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 9.7e-44 181.8 348 57.8
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.6e-43 181.0 353 57.2
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 2.2e-43 180.6 352 57.7
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 2.8e-43 180.3 341 58.9
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.7e-43 179.9 245 48.2
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.8e-42 177.6 373 50.1
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 2.4e-42 177.2 351 49.6
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 3.1e-42 176.8 329 47.1
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 5.3e-42 176.0 345 47.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 6.9e-42 175.6 377 48.0
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 9.0e-42 175.3 394 34.8
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 1.5e-41 174.5 327 45.6
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.5e-41 174.5 321 49.2
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 4.5e-41 172.9 317 59.6
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 4.5e-41 172.9 373 47.7
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 7.6e-41 172.2 319 48.9
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.0e-40 171.8 348 45.7
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.0e-40 171.8 348 45.7
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.3e-40 171.4 344 45.9
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.9e-40 170.2 365 39.2
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 5.0e-40 169.5 466 42.3
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 5.0e-40 169.5 353 55.2
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 6.5e-40 169.1 234 63.7
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.5e-40 169.1 348 45.1
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.1e-39 168.3 325 49.8
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.2e-39 166.4 341 43.1
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.6e-38 163.3 316 47.8
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 6.7e-37 159.1 340 51.8
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 6.7e-37 159.1 340 51.8
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 6.7e-37 159.1 122 65.6
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 4.3e-36 156.4 327 45.0
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.8e-35 153.7 121 65.3
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 6.9e-34 149.1 123 64.2
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 3.4e-33 146.7 244 44.7
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.3e-32 144.8 208 45.7
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 3.8e-32 143.3 121 59.5
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 5.0e-32 142.9 303 37.3
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 2.5e-31 140.6 228 45.2
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 4.7e-30 136.3 314 38.9
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.4e-29 134.8 312 37.2
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 6.7e-29 132.5 76 81.6
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 2.8e-27 127.1 262 43.5
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 1.4e-23 114.8 245 43.7
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.1e-22 110.9 330 43.3
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 2.7e-22 110.5 358 39.7
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 8.0e-22 109.0 82 64.6
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 6.7e-21 105.9 264 41.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-18 97.8 82 57.3
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-17 94.7 267 34.1
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 5.5e-15 86.3 48 77.1
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 5.5e-15 86.3 135 53.3
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 5.2e-13 79.7 109 37.6
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 3.3e-12 77.0 248 41.9
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 2.2e-11 74.3 58 62.1
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 8.5e-08 62.4 40 65.0
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 3.2e-07 60.5 41 63.4
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 2.1e-06 57.8 35 65.7
SEGI_41358 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 2.7e-06 57.4 38 63.2
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 3.6e-06 57.0 34 64.7
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 4.7e-06 56.6 39 64.1
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 4.7e-06 56.6 32 65.6
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 4.7e-06 56.6 57 54.4
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 6.1e-06 56.2 34 64.7
Nitab4.5_0007261g0060 Nicotiana tabacum HOM05D005264 ORTHO05D005428 8.0e-06 55.8 34 64.7
Peaxi162Scf00760g00024 Petunia axillaris HOM05D005264 ORTHO05D005428 8.0e-06 55.8 34 64.7


User provided reference genes

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