Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 4.0e-65 251.1 116 100.0
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 2.9e-63 245.0 116 97.4
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.4e-62 242.7 115 95.7
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.9e-62 242.3 115 96.5
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 4.2e-62 241.1 113 96.5
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 4.2e-62 241.1 115 94.8
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 5.5e-62 240.7 115 96.5
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 5.5e-62 240.7 114 94.7
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 7.1e-62 240.4 112 97.3
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 1.2e-61 239.6 115 94.8
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 3.5e-61 238.0 117 94.9
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 3.5e-61 238.0 117 94.9
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 4.6e-61 237.7 115 93.0
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 6.0e-61 237.3 113 96.5
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.0e-60 236.5 115 93.0
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 1.0e-60 236.5 112 95.5
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.3e-60 236.1 114 92.1
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 3.0e-60 235.0 117 93.2
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 3.9e-60 234.6 112 92.9
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 3.9e-60 234.6 112 92.9
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 5.1e-60 234.2 115 93.0
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 5.1e-60 234.2 112 92.9
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 6.7e-60 233.8 115 89.6
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 6.7e-60 233.8 115 93.0
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.1e-59 233.0 116 90.5
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.5e-59 232.6 115 92.2
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.5e-59 232.6 115 92.2
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 1.5e-59 232.6 115 92.2
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 4.3e-59 231.1 116 88.8
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 7.4e-59 230.3 115 90.4
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 9.6e-59 229.9 115 88.7
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 1.6e-58 229.2 115 89.6
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 2.1e-58 228.8 107 98.1
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 2.8e-58 228.4 115 92.2
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 3.7e-58 228.0 122 86.9
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 4.8e-58 227.6 113 91.2
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 4.8e-58 227.6 116 89.7
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 4.8e-58 227.6 115 87.8
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 6.2e-58 227.3 114 88.6
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 6.2e-58 227.3 116 87.9
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 8.2e-58 226.9 117 91.5
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.8e-57 225.7 115 89.6
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.4e-57 225.3 114 87.7
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.4e-57 225.3 114 87.7
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 3.1e-57 224.9 116 87.1
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.1e-57 224.9 113 90.3
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 3.1e-57 224.9 115 87.0
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 5.3e-57 224.2 117 88.0
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 6.9e-57 223.8 116 88.8
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 9.0e-57 223.4 112 87.5
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 1.5e-56 222.6 112 89.3
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.6e-56 221.9 112 90.2
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 3.4e-56 221.5 115 87.0
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 3.4e-56 221.5 117 87.2
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 4.5e-56 221.1 112 89.3
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 1.0e-55 219.9 112 85.7
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.3e-55 219.5 112 84.8
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 1.3e-55 219.5 112 88.4
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.3e-55 219.5 112 87.5
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.7e-55 219.2 114 86.8
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 1.7e-55 219.2 115 86.1
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.7e-55 219.2 115 82.6
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.2e-55 218.8 112 83.9
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 2.2e-55 218.8 112 83.9
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 2.2e-55 218.8 112 86.6
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 3.8e-55 218.0 115 81.7
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.9e-54 215.7 110 85.5
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 81.7
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 81.7
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 80.9
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 2.5e-54 215.3 112 83.0
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 3.2e-54 214.9 116 81.0
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 3.2e-54 214.9 116 84.5
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 3.2e-54 214.9 115 80.9
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 3.2e-54 214.9 115 80.9
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 3.2e-54 214.9 115 80.9
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 3.2e-54 214.9 115 80.9
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 3.2e-54 214.9 112 83.9
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 4.2e-54 214.5 112 82.1
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.2e-54 214.5 112 83.0
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 4.2e-54 214.5 115 80.0
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 5.5e-54 214.2 112 83.0
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 5.5e-54 214.2 115 82.6
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.2e-53 213.0 112 82.1
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.6e-53 212.6 113 82.3
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 2.7e-53 211.8 113 82.3
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 3.5e-53 211.5 112 82.1
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 4.6e-53 211.1 113 81.4
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 4.6e-53 211.1 113 81.4
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 4.6e-53 211.1 113 81.4
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 4.6e-53 211.1 115 84.3
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 7.9e-53 210.3 115 84.3
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.9e-53 210.3 115 84.3
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.9e-53 210.3 115 84.3
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.9e-53 210.3 115 84.3
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 7.9e-53 210.3 115 84.3
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.0e-52 209.9 116 81.0
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 1.8e-52 209.1 115 83.5
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 1.8e-52 209.1 115 83.5
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.8e-52 209.1 114 78.9
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 3.0e-52 208.4 173 60.7
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 3.9e-52 208.0 148 68.9
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 3.9e-52 208.0 114 80.7
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 3.9e-52 208.0 114 80.7
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 6.7e-52 207.2 112 80.4
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 8.7e-52 206.8 98 94.9
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 8.7e-52 206.8 115 80.0
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 1.1e-51 206.5 110 85.5
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 4.3e-51 204.5 100 95.0
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 7.4e-51 203.8 98 91.8
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 4.8e-50 201.1 97 92.8
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 1.1e-49 199.9 98 92.9
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 1.4e-49 199.5 114 77.2
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-49 198.7 115 81.7
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 9.0e-49 196.8 99 89.9
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.2e-48 196.4 98 90.8
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 7.7e-48 193.7 115 74.8
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 7.7e-48 193.7 115 74.8
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.3e-47 193.0 95 89.5
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 8.5e-47 190.3 95 90.5
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 8.5e-47 190.3 114 71.1
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 8.5e-47 190.3 114 71.1
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 1.2e-45 186.4 143 60.8
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 2.1e-45 185.7 107 72.9
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.8e-44 182.6 111 67.6
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 6.7e-44 180.6 126 66.7
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 9.7e-43 176.8 151 58.3
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 9.7e-43 176.8 109 69.7
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 9.7e-43 176.8 109 68.8
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 2.4e-41 172.2 107 66.4
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 9.1e-41 170.2 97 76.3
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 2.2e-39 165.6 80 91.2
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 1.1e-38 163.3 79 91.1
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 2.5e-38 162.2 74 95.9
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 3.2e-38 161.8 78 91.0
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.6e-37 159.5 77 92.2
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.0e-36 156.8 78 87.2
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 7.4e-35 150.6 78 83.3
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 7.0e-33 144.1 74 85.1
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 6.5e-31 137.5 92 62.0
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.1e-30 136.7 102 52.9
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.5e-30 136.3 99 70.7
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 3.2e-30 135.2 102 69.6
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 4.4e-27 124.8 101 51.5
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.1e-25 118.2 75 77.3
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.5e-24 114.8 76 72.4
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 5.5e-22 107.8 93 58.1
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 5.5e-22 107.8 93 58.1
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 5.5e-22 107.8 93 58.1
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 5.2e-20 101.3 154 42.2
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 9.7e-19 97.1 58 70.7
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 2.8e-18 95.5 99 41.4
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 1.8e-17 92.8 57 75.4
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 1.6e-16 89.7 100 42.0
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 3.2e-14 82.0 79 55.7
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 7.2e-14 80.9 38 97.4
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 1.2e-13 80.1 41 87.8
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 8.0e-13 77.4 83 41.0
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.1e-09 67.0 75 50.7


User provided reference genes

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