Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1976.4 995 100.0
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1622.1 946 84.9
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1521.9 1037 75.9
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1505.3 949 79.5
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1503.8 947 79.2
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1489.2 947 78.7
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1488.4 946 77.8
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1487.2 946 78.8
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1484.2 948 78.0
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1474.5 946 77.2
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1470.3 946 77.1
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1463.4 1023 74.3
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1461.4 946 76.8
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1457.2 947 75.9
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1446.8 948 75.8
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1446.4 946 74.9
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1446.0 948 75.1
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1445.3 948 75.1
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1437.9 948 74.8
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1431.4 949 75.9
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1431.4 945 74.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1429.8 946 75.8
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1423.3 946 74.1
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1414.4 942 74.7
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1413.7 946 74.1
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1412.1 949 74.3
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1409.0 938 74.7
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1408.3 952 73.1
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1406.3 944 73.7
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1401.7 947 73.6
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1394.0 946 72.7
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1393.6 946 73.4
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1393.6 945 72.4
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1393.3 1012 69.7
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1392.1 948 73.5
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1387.5 945 72.7
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1387.1 854 81.7
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1384.0 945 72.6
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1375.9 949 73.3
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1374.4 947 72.5
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1374.0 932 73.2
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1374.0 954 73.5
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1372.8 947 71.6
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1371.7 940 71.9
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1364.0 948 72.5
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1363.2 947 73.5
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1362.8 944 73.7
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1362.4 952 70.4
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1362.1 966 71.2
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1361.3 966 71.2
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1360.1 952 70.2
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1359.4 946 72.3
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1359.4 947 72.7
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1357.8 1033 67.9
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1355.1 947 72.8
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1353.2 950 70.8
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1350.9 946 71.0
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1348.6 946 71.9
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1345.9 946 71.9
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1343.9 950 70.0
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1341.6 948 69.4
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1337.0 947 69.6
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1335.1 947 70.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1333.9 946 71.4
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1330.1 946 71.1
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1330.1 948 71.4
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1328.2 946 70.5
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1325.1 948 70.7
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1323.9 948 69.4
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1322.8 934 71.3
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1321.2 944 70.3
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1321.2 945 69.9
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1319.7 946 70.3
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1316.2 948 69.2
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1314.7 948 69.1
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1313.9 953 70.3
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1308.9 947 68.5
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1304.7 949 68.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1280.8 955 67.7
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1273.1 757 84.1
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1271.5 947 67.9
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1269.6 985 65.2
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1266.1 951 67.2
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1259.6 953 66.3
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1253.8 952 66.5
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1248.0 957 67.3
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1247.3 1156 57.1
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1171.4 943 64.1
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1151.3 738 77.9
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1110.5 745 73.3
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1103.2 787 70.4
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1090.5 694 78.7
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 5.7e-285 984.6 684 72.1
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 1.1e-283 980.3 776 63.7
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 5.0e-273 944.9 976 52.6
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 4.7e-271 938.3 854 60.4
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 5.2e-270 934.9 948 56.0
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.5e-261 906.7 953 50.6
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 7.8e-242 841.3 964 49.0
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 3.3e-216 756.1 524 73.7
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.5e-211 738.8 694 56.8
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 2.1e-194 683.7 551 63.5
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.7e-183 646.4 412 77.4
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 5.9e-181 639.0 412 74.5
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 5.0e-180 636.0 425 73.6
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 5.9e-173 612.5 611 56.5
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 5.5e-171 605.9 398 75.1
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.3e-163 580.1 405 70.9
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 4.3e-155 553.1 345 75.9
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 2.1e-154 550.8 365 72.1
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.1e-154 550.8 365 73.4
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 2.8e-154 550.4 345 74.2
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 3.6e-154 550.1 345 75.1
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 6.2e-154 549.3 348 75.9
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 7.5e-152 542.3 339 74.0
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 4.1e-150 536.6 343 75.5
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.0e-149 532.7 345 74.5
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 7.8e-149 532.3 391 66.2
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 5.2e-145 519.6 343 74.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.0e-144 517.7 345 72.5
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 4.1e-142 510.0 349 70.2
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 9.5e-139 498.8 378 65.1
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 5.1e-124 449.9 358 62.8
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 4.6e-117 426.8 343 63.3
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 2.5e-115 421.0 1022 31.1
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.5e-107 394.4 345 57.1
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 9.6e-107 392.5 318 62.3
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 1.3e-103 382.1 249 77.9
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.1e-73 282.7 208 67.3
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.1e-65 256.1 204 65.2
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 9.1e-65 253.1 286 46.5
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 1.3e-63 249.2 162 75.3
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 4.7e-61 240.7 155 80.0
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 5.2e-60 237.3 180 71.7
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 8.8e-60 236.5 136 87.5
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.6e-56 225.7 180 68.9
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.0e-52 211.5 186 60.8
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 3.0e-52 211.5 137 81.0
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.6e-45 188.0 156 60.3
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 6.1e-45 187.2 155 62.6
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.4e-44 186.0 110 84.5
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 1.6e-40 172.6 178 53.9
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 5.6e-38 164.1 108 75.0
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 3.2e-33 148.3 105 71.4
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 3.5e-32 144.8 95 74.7
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.6e-29 136.0 137 51.1
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 3.6e-29 134.8 83 72.3
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 8.1e-29 133.7 137 49.6
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 7.5e-27 127.1 85 63.5
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 3.7e-26 124.8 96 63.5
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.0e-23 116.7 96 60.4
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 6.2e-21 107.5 107 53.3
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 1.8e-20 105.9 85 62.4
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.3e-18 99.8 69 73.9
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 4.2e-17 94.7 75 66.7
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 7.1e-17 94.0 58 69.0
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 4.6e-16 91.3 49 89.8
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 2.3e-15 89.0 74 66.2
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 2.3e-15 89.0 96 50.0
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 1.1e-14 86.7 57 64.9
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 2.8e-13 82.0 51 72.5
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 3.6e-13 81.6 56 62.5
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.3e-10 73.2 44 72.7
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 3.2e-09 68.6 41 70.7
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 9.3e-09 67.0 53 67.9
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 1.6e-08 66.2 41 68.3
MBI03_g26335_MAGBIO Magnolia biondii HOM05D000553 ORTHO05D244274 8.7e-07 60.5 57 59.6


User provided reference genes

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