Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.1e-246 854.7 453 100.0
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 3.2e-198 695.3 455 82.4
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.5e-192 676.4 456 78.1
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 3.9e-188 661.8 455 76.5
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 9.5e-187 657.1 455 74.9
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.1e-186 656.0 441 78.2
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 4.7e-186 654.8 446 78.0
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.1e-185 653.7 461 76.4
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 2.4e-185 652.5 456 76.5
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 3.1e-185 652.1 455 75.8
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.1e-185 652.1 458 76.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 6.8e-185 651.0 457 75.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.2e-184 650.2 459 76.7
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 2.0e-184 649.4 460 75.4
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 5.8e-184 647.9 458 77.1
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 9.9e-184 647.1 455 75.4
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 6.4e-183 644.4 453 76.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.9e-182 642.9 455 75.2
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 1.9e-182 642.9 458 74.5
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.1e-182 641.7 456 74.3
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 9.2e-182 640.6 461 74.8
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 9.2e-182 640.6 455 74.9
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.6e-181 639.8 456 75.2
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.5e-181 638.6 457 74.2
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 3.5e-181 638.6 456 76.8
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 4.6e-181 638.3 454 74.9
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 7.8e-181 637.5 456 74.1
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.9e-180 635.2 456 75.0
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.1e-179 633.6 452 74.6
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.5e-179 633.3 456 74.1
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.9e-179 632.9 456 75.7
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.5e-179 632.5 454 74.4
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.5e-179 632.5 456 75.9
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 7.3e-179 630.9 458 74.7
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 7.3e-179 630.9 451 74.3
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.1e-177 627.1 456 74.6
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.4e-177 626.7 455 74.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.4e-177 625.9 454 74.0
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 4.0e-177 625.2 460 74.3
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 5.2e-177 624.8 460 74.3
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 9.0e-177 624.0 399 83.0
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 2.0e-176 622.9 446 74.7
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 2.0e-176 622.9 455 75.4
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 4.4e-176 621.7 457 73.5
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 7.6e-176 620.9 455 72.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.7e-175 619.8 456 74.6
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 3.8e-175 618.6 455 73.4
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.1e-174 617.1 446 74.0
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.4e-174 616.7 452 73.2
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 5.4e-174 614.8 455 73.6
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 5.4e-174 614.8 453 71.3
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 7.1e-174 614.4 457 74.2
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.6e-173 613.2 460 72.6
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 4.6e-173 611.7 455 73.6
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 1.7e-172 609.8 443 72.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 2.3e-172 609.4 460 73.3
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.3e-172 609.4 443 72.5
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.6e-172 607.8 443 72.0
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 1.9e-171 606.3 457 71.3
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.9e-171 606.3 464 71.6
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.3e-171 605.1 458 72.7
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.1e-170 602.8 455 69.9
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 6.2e-170 601.3 456 70.2
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.1e-169 600.5 457 70.7
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.8e-169 599.7 455 69.9
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.4e-169 599.4 453 70.6
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.4e-169 599.4 432 74.5
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 4.0e-169 598.6 460 70.4
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 4.0e-169 598.6 362 83.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 6.9e-169 597.8 461 70.7
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.5e-168 596.7 455 69.7
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.5e-168 596.7 434 73.3
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.5e-168 596.7 455 69.2
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 6.4e-167 591.3 453 70.0
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.9e-166 589.7 455 71.4
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.2e-166 589.0 459 69.1
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.3e-166 587.4 458 69.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.3e-166 587.4 458 69.0
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.6e-165 586.6 457 70.9
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.6e-165 585.1 467 69.0
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.0e-164 582.4 454 69.2
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 6.7e-164 581.3 460 68.0
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.7e-164 580.9 456 69.5
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.7e-164 580.9 456 69.5
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.5e-163 580.1 461 67.2
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.1e-162 576.2 455 68.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.4e-161 572.8 455 67.7
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 9.0e-161 570.9 453 68.2
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.5e-160 570.1 453 68.4
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 7.6e-160 567.8 453 67.8
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 9.9e-160 567.4 453 68.2
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-159 567.0 455 67.3
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.3e-159 567.0 455 67.3
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.3e-159 567.0 455 67.3
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.3e-159 567.0 341 84.8
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 1.7e-159 566.6 444 68.5
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-158 563.9 462 66.2
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.3e-154 550.4 362 77.3
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 5.3e-153 545.0 365 76.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.5e-150 535.0 455 64.6
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.2e-142 508.1 452 62.8
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.1e-141 506.5 457 63.2
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 8.2e-138 494.6 320 79.4
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.9e-135 486.1 290 88.3
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 3.0e-132 476.1 311 77.5
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.6e-128 463.0 307 78.5
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 3.7e-122 442.6 282 81.2
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.1e-118 431.0 411 59.1
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 2.7e-117 426.4 278 77.0
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.7e-117 426.4 373 62.2
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.0e-116 422.9 371 61.7
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.8e-113 413.7 301 71.4
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.5e-112 409.1 374 58.3
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 5.9e-112 408.7 377 57.6
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 3.6e-109 399.4 388 55.7
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.2e-106 390.2 281 73.3
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 8.9e-100 368.2 323 61.9
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.4e-99 365.9 369 55.0
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.7e-98 362.8 369 54.7
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 3.1e-92 343.2 364 54.1
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.0e-92 342.8 367 52.6
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.7e-90 337.4 385 48.6
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 3.2e-89 333.2 355 51.0
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.1e-81 308.1 242 66.9
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.1e-81 308.1 372 50.0
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 4.6e-80 302.8 375 46.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-71 274.2 332 49.1
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 9.0e-52 208.8 345 40.6
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 9.0e-52 208.8 150 70.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.6e-45 188.0 222 49.5
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-43 181.0 164 57.3
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.3e-39 167.5 114 70.2
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-33 147.1 114 64.9
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.2e-33 146.7 86 80.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 5.5e-33 146.4 156 53.8
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.3e-30 137.1 171 48.5
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 9.4e-25 119.0 73 86.3
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.8e-21 106.7 87 71.3
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.1e-16 91.3 102 49.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 9.7e-14 82.4 75 54.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.8e-10 70.5 57 59.6
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 4.4e-06 57.0 98 38.8


User provided reference genes

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