Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 3.3e-127 458.4 227 100.0
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 6.8e-117 424.1 227 90.7
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 2.7e-113 412.1 240 85.4
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 3.5e-113 411.8 227 89.0
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 1.3e-112 409.8 227 87.7
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.1e-112 407.9 226 88.9
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 9.5e-111 403.7 225 87.1
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 2.4e-106 389.0 227 84.1
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 9.2e-106 387.1 226 84.5
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 1.2e-105 386.7 225 83.1
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 2.7e-105 385.6 225 84.0
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 3.5e-105 385.2 227 83.7
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 3.5e-105 385.2 225 83.6
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.0e-104 383.6 225 85.8
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 3.9e-104 381.7 225 83.6
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 5.1e-104 381.3 227 81.1
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 5.1e-104 381.3 228 82.0
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 6.6e-104 380.9 225 81.8
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 4.3e-103 378.3 225 82.2
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 5.6e-103 377.9 225 82.7
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 1.2e-102 376.7 226 81.4
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 1.2e-102 376.7 226 82.3
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.2e-102 376.7 225 83.6
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 2.1e-102 375.9 225 81.8
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 2.1e-102 375.9 228 81.6
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 4.7e-102 374.8 225 83.1
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 4.7e-102 374.8 225 83.1
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 6.2e-102 374.4 227 81.1
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 8.1e-102 374.0 227 81.5
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 1.1e-101 373.6 226 81.0
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 1.8e-101 372.9 227 81.5
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 3.1e-101 372.1 225 81.8
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 4.0e-101 371.7 225 81.3
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 5.2e-101 371.3 228 80.3
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 8.9e-101 370.5 226 80.5
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 2.6e-100 369.0 225 79.1
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 3.4e-100 368.6 225 82.7
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 4.4e-100 368.2 227 81.1
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 7.6e-100 367.5 219 81.3
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.3e-99 366.7 225 78.7
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 1.7e-99 366.3 225 82.2
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 3.8e-99 365.2 227 79.3
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 4.9e-99 364.8 225 82.2
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 6.4e-99 364.4 225 81.3
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 1.1e-98 363.6 227 81.1
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.1e-98 363.6 227 80.2
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.4e-98 362.5 225 80.0
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 2.4e-98 362.5 225 79.1
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.4e-98 362.5 225 81.8
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.2e-98 362.1 225 79.6
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 4.2e-98 361.7 225 81.8
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 4.2e-98 361.7 227 80.6
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 5.4e-98 361.3 225 80.0
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 7.1e-98 360.9 225 80.0
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.2e-97 360.1 227 79.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 1.6e-97 359.8 227 79.3
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 2.7e-97 359.0 227 80.2
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 4.6e-97 358.2 218 80.3
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 6.6e-96 354.4 225 78.2
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.1e-95 353.6 193 88.6
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 1.5e-95 353.2 225 78.7
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 1.9e-95 352.8 225 77.3
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 5.6e-95 351.3 225 77.8
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 5.6e-95 351.3 225 77.8
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 7.3e-95 350.9 252 73.4
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 7.3e-95 350.9 225 76.9
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 1.3e-94 350.1 226 77.4
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.6e-94 349.7 226 80.1
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 1.6e-94 349.7 227 78.0
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 4.0e-93 345.1 229 76.0
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 5.8e-92 341.3 225 73.3
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 9.9e-92 340.5 226 76.1
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 9.3e-90 334.0 225 72.0
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 6.0e-89 331.3 226 74.3
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 6.0e-89 331.3 228 75.0
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 2.3e-88 329.3 225 74.2
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 3.0e-88 328.9 225 70.7
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 5.1e-88 328.2 225 70.7
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 6.6e-88 327.8 223 73.1
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.1e-87 327.0 225 72.4
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.8e-86 322.4 225 69.3
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 6.2e-86 321.2 225 71.1
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 4.0e-85 318.5 227 70.5
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 4.0e-85 318.5 228 71.5
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 4.0e-85 318.5 187 81.3
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 4.5e-84 315.1 225 69.8
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 4.5e-84 315.1 225 70.7
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 6.4e-83 311.2 173 87.3
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 1.1e-82 310.5 227 68.3
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 1.9e-82 309.7 225 68.9
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 4.2e-82 308.5 223 70.4
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 1.6e-81 306.6 174 83.3
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 3.5e-81 305.4 226 69.5
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 3.9e-80 302.0 225 68.9
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 6.7e-80 301.2 226 68.6
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 2.5e-79 299.3 226 68.6
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 4.3e-79 298.5 225 67.1
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 8.1e-78 294.3 236 66.1
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.9e-74 283.1 263 58.9
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 8.7e-72 274.2 183 75.4
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 1.1e-69 267.3 137 90.5
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 1.4e-69 266.9 135 91.9
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.4e-69 266.9 169 79.3
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 3.1e-69 265.8 136 90.4
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 5.3e-69 265.0 171 79.5
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 2.0e-68 263.1 136 91.2
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 3.0e-64 249.2 175 73.7
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 2.5e-63 246.1 135 85.9
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 2.4e-61 239.6 239 55.6
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 1.3e-59 233.8 207 60.4
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 7.2e-58 228.0 183 61.7
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 1.4e-56 223.8 235 53.6
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 7.7e-44 181.4 221 47.5
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 2.8e-38 162.9 103 77.7
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 2.9e-35 152.9 93 82.8
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 1.2e-31 141.0 146 54.8
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 2.2e-30 136.7 80 78.8
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 2.5e-26 123.2 183 41.5
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 4.2e-26 122.5 55 94.5
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.8e-24 117.1 144 50.0
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 6.8e-24 115.2 64 81.2
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 3.4e-23 112.8 91 64.8
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 3.4e-23 112.8 92 59.8
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 2.4e-21 106.7 47 95.7
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 5.4e-21 105.5 58 87.9
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 6.1e-17 92.0 59 74.6
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 4.0e-16 89.4 58 72.4
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 5.2e-16 89.0 128 37.5
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 2.2e-14 83.6 189 34.9
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 9.2e-13 78.2 229 33.2
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 5.0e-11 72.4 64 59.4
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 5.6e-10 68.9 58 67.2
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 9.5e-10 68.2 52 71.2
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 1.5e-07 60.8 29 86.2


User provided reference genes

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