Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 0.0e+00 2071.6 1038 100.0
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 0.0e+00 2026.9 1038 98.0
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 4.7e-306 1054.7 1069 57.5
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.0e-244 850.9 1153 45.3
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 5.7e-243 845.1 1054 49.9
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 6.3e-242 841.6 1160 44.5
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.5e-240 837.0 1107 45.2
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 3.4e-240 835.9 1086 47.0
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 5.1e-236 822.0 1118 44.3
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 2.5e-235 819.7 1108 45.1
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 1.5e-227 793.9 1113 44.4
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 8.2e-226 788.1 1060 47.4
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 7.0e-225 785.0 1076 44.1
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.6e-221 773.9 1109 44.2
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 3.6e-221 772.7 1089 44.4
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 7.7e-216 755.0 1069 43.8
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.5e-214 750.7 1040 46.7
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 1.6e-213 747.3 1091 43.2
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 6.1e-213 745.3 1106 42.7
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.4e-209 734.2 1102 42.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 4.5e-208 729.2 1089 41.1
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 2.9e-207 726.5 1111 41.9
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 1.8e-204 717.2 1083 43.0
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 2.8e-202 709.9 1098 41.7
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 3.7e-202 709.5 1098 41.3
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 1.1e-198 698.0 1082 41.1
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 5.4e-193 679.1 1133 39.8
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 1.6e-189 667.5 1106 40.1
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 1.2e-181 641.3 1121 38.3
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 4.1e-177 626.3 582 58.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 2.7e-176 623.6 1057 40.3
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 1.7e-175 620.9 1058 39.8
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 5.1e-175 619.4 1078 38.8
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.5e-174 617.8 1122 38.6
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 4.7e-173 612.8 1129 37.8
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 8.1e-173 612.1 1117 38.3
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 5.2e-172 609.4 1087 39.5
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 6.8e-172 609.0 1087 39.1
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.7e-170 604.4 1185 37.0
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.1e-169 601.7 1089 38.2
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 7.1e-169 599.0 1109 37.9
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 5.6e-166 589.3 1093 36.6
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 1.1e-164 585.1 683 52.4
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.8e-164 584.3 1171 37.1
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 2.4e-164 583.9 1082 38.1
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 6.8e-164 582.4 1119 37.1
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.0e-163 580.9 1083 38.1
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 6.4e-162 575.9 1037 38.6
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 1.9e-158 564.3 1197 34.8
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 1.4e-156 558.1 1114 35.8
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 3.1e-156 557.0 1075 36.7
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.2e-155 555.1 1123 35.6
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.5e-150 537.3 1118 34.0
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 1.8e-148 531.2 1087 35.3
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.4e-148 530.8 882 39.1
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 3.1e-148 530.4 1087 35.3
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 9.0e-148 528.9 1053 37.3
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.6e-147 527.3 1095 34.8
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 5.8e-147 526.2 1055 37.3
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 9.9e-147 525.4 1051 36.8
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 7.9e-144 515.8 1085 35.0
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 7.9e-144 515.8 1083 35.7
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.0e-143 515.4 1125 34.3
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.5e-142 510.8 1067 35.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 3.3e-142 510.4 1077 36.9
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 1.4e-140 505.0 1128 34.0
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 9.0e-140 502.3 1122 33.3
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 7.6e-139 499.2 889 38.7
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 7.6e-139 499.2 1066 34.3
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 7.1e-137 492.7 1074 36.0
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 2.7e-136 490.7 1086 35.7
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 3.3e-134 483.8 1166 33.4
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 1.7e-130 471.5 1047 33.5
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 3.8e-130 470.3 865 38.0
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.9e-129 468.0 1066 32.0
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 2.5e-126 457.6 1061 32.4
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 3.7e-117 427.2 1081 32.0
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 1.0e-111 409.1 1083 30.6
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 7.0e-108 396.4 1071 31.1
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.9e-105 388.3 527 47.4
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 9.4e-105 386.0 525 47.4
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 1.5e-102 378.6 881 33.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.1e-100 370.9 1058 31.9
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 2.9e-98 364.4 547 41.3
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 3.4e-94 350.9 1042 31.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 5.4e-92 343.6 1063 30.8
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 1.6e-91 342.0 1042 30.7
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 5.5e-89 333.6 805 33.2
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 5.7e-86 323.6 758 34.3
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 4.9e-85 320.5 1013 30.0
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 6.3e-85 320.1 750 33.9
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 8.3e-85 319.7 1013 29.9
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 1.1e-84 319.3 750 33.6
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 1.1e-84 319.3 750 33.6
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 1.8e-84 318.5 1070 28.7
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 3.3e-81 307.8 315 54.0
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 6.4e-77 293.5 1096 27.7
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 6.6e-74 283.5 248 58.9
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 8.6e-74 283.1 660 34.8
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 7.3e-73 280.0 702 32.5
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 1.8e-71 275.4 785 31.3
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 6.8e-71 273.5 513 36.3
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-68 265.8 949 27.6
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 2.5e-65 255.0 1011 30.4
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 4.3e-65 254.2 774 31.4
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 1.6e-64 252.3 1050 29.2
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-59 235.7 501 34.7
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 9.5e-57 226.5 776 28.2
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 2.3e-55 221.9 389 36.8
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 2.3e-55 221.9 754 28.6
Phvul.007G125900 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 1.5e-54 219.2 781 29.4
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 1.7e-53 215.7 855 27.6
Lj5g0013708 Lotus japonicus HOM05D005259 ORTHO05D006402 1.9e-52 212.2 781 28.4
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 2.7e-51 208.4 1047 25.3
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 9.6e-49 199.9 288 38.9
Ca_09836_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 1.2e-43 183.0 743 27.2
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 1.3e-42 179.5 706 26.3
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 1.7e-42 179.1 309 35.9
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 8.7e-42 176.8 218 46.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 3.3e-41 174.9 170 53.5
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 3.4e-38 164.9 169 50.3
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 2.2e-37 162.2 151 55.6
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 6.4e-37 160.6 178 50.0
Medtr1g075280 Medicago truncatula HOM05D005259 ORTHO05D006402 7.9e-35 153.7 564 29.4
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 6.6e-34 150.6 166 48.2
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 6.9e-31 140.6 157 50.3
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.5e-30 139.4 353 30.3
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 4.5e-30 137.9 113 58.4
MBI04_g45851_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.2e-28 131.7 428 28.5
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 1.1e-25 123.2 129 50.4
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 1.3e-24 119.8 167 40.7
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 8.4e-21 107.1 1014 23.0
Psat4g092760 Pisum sativum HOM05D005259 ORTHO05D006402 1.4e-20 106.3 416 30.0
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 1.9e-20 105.9 290 29.0
arahy.Tifrunner.gnm1.ann1.7CP98C Arachis hypogaea HOM05D005259 ORTHO05D006402 7.1e-20 104.0 310 31.6
Lj6A656T72 Lonicera japonica HOM05D005259 ORTHO05D006402 9.3e-20 103.6 216 39.4
TPR.G27199 Trifolium pratense HOM05D005259 ORTHO05D006402 5.7e-17 94.4 463 28.5
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.3e-16 93.2 109 41.3
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 2.1e-16 92.4 63 61.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.2e-14 86.7 97 43.3
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 2.0e-14 85.9 80 51.2
arahy.Tifrunner.gnm1.ann1.YIX0R7 Arachis hypogaea HOM05D005259 ORTHO05D006402 1.4e-12 79.7 93 43.0
arahy.Tifrunner.gnm1.ann1.TEF2FC Arachis hypogaea HOM05D005259 ORTHO05D006402 1.2e-11 76.6 93 41.9
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 6.7e-10 70.9 227 30.4
Glyma.20G205250 Glycine max HOM05D005259 ORTHO05D006402 2.4e-07 62.4 168 28.6


User provided reference genes

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