Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 0.0e+00 1372.8 703 100.0
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 0.0e+00 1340.1 711 97.2
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 3.2e-306 1054.7 719 76.1
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 3.4e-284 981.5 702 71.2
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 1.0e-280 969.9 698 70.6
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 9.0e-277 956.8 699 70.7
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 2.0e-276 955.7 807 64.7
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 4.2e-274 948.0 710 69.0
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 6.1e-273 944.1 711 68.2
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.0e-272 943.3 702 69.8
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 3.0e-272 941.8 702 69.4
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 3.3e-271 938.3 699 69.4
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 4.1e-269 931.4 704 68.6
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 2.0e-268 929.1 708 68.2
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 2.2e-267 925.6 701 67.2
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 8.2e-262 907.1 705 66.2
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 1.1e-261 906.7 700 67.1
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 9.1e-261 903.7 699 67.8
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 2.0e-260 902.5 704 66.2
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.0e-259 897.9 705 66.1
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 4.2e-258 894.8 699 67.2
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 2.1e-257 892.5 701 66.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.6e-257 891.7 699 67.0
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 6.7e-256 887.5 709 65.4
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 2.8e-254 882.1 702 65.4
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 2.4e-253 879.0 708 65.7
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 4.1e-253 878.2 698 64.9
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 7.0e-253 877.5 704 65.2
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 7.7e-252 874.0 701 64.3
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.3e-251 873.2 717 64.9
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 3.8e-251 871.7 719 64.5
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.5e-250 869.8 703 62.6
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.9e-250 869.4 703 63.6
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 1.9e-250 869.4 717 64.2
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 3.2e-250 868.6 703 63.4
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 1.6e-249 866.3 709 63.9
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 6.1e-249 864.4 708 65.5
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 7.5e-247 857.4 708 62.3
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 7.5e-247 857.4 711 63.9
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.7e-246 856.3 695 62.3
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 6.3e-246 854.4 668 69.0
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.8e-245 852.8 707 63.8
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 7.0e-245 850.9 701 63.2
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.0e-243 847.0 704 62.5
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 2.9e-243 845.5 703 61.9
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 5.0e-243 844.7 706 62.6
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 6.5e-243 844.3 714 61.9
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 8.5e-243 844.0 703 61.9
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 2.7e-241 839.0 714 63.0
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 4.7e-241 838.2 705 62.8
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 1.4e-240 836.6 716 60.5
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 6.8e-240 834.3 696 64.7
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 1.5e-239 833.2 698 61.9
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 3.4e-239 832.0 692 61.8
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 7.5e-239 830.9 712 62.2
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 4.9e-238 828.2 706 62.2
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.8e-237 826.2 708 61.2
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 2.4e-237 825.9 748 58.8
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.1e-237 825.5 740 59.7
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 5.4e-237 824.7 700 62.4
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 5.4e-237 824.7 622 67.8
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 1.2e-236 823.5 710 60.1
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.7e-235 819.7 713 60.7
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 1.2e-231 807.0 703 61.2
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.8e-229 799.7 714 59.2
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.9e-226 789.6 708 60.0
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 1.0e-224 783.9 648 61.9
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 6.4e-222 774.6 537 72.1
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.2e-220 770.4 710 58.9
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 2.3e-216 756.1 717 58.4
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.2e-215 753.8 581 67.0
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 7.5e-215 751.1 701 60.3
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.9e-213 746.5 524 72.5
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 2.1e-212 743.0 541 69.1
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.9e-211 738.8 701 56.9
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 2.1e-209 733.0 725 57.5
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 3.6e-209 732.3 724 55.5
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 1.6e-201 706.8 531 68.2
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 2.0e-199 699.9 504 71.6
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 7.6e-199 698.0 710 54.8
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 8.7e-195 684.5 453 75.9
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 9.6e-194 681.0 581 62.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.0e-191 673.3 534 64.8
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 1.9e-186 656.8 711 52.3
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 1.5e-183 647.1 698 52.9
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.2e-175 620.9 726 47.1
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 3.0e-171 606.3 493 65.5
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 5.3e-168 595.5 724 46.8
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.8e-155 553.9 458 64.2
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 5.3e-152 542.3 393 70.0
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.5e-149 533.5 720 42.5
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.1e-144 518.1 357 72.8
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 5.3e-144 515.8 357 72.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 9.4e-141 505.0 799 42.8
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 2.5e-133 480.3 405 63.0
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 4.0e-131 473.0 352 66.5
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.5e-130 471.1 352 66.5
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 6.3e-129 465.7 352 65.3
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 6.1e-124 449.1 312 74.0
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 2.9e-118 430.3 322 70.5
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 5.0e-118 429.5 774 37.1
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 6.1e-116 422.5 838 34.8
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 8.3e-113 412.1 359 60.4
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.3e-105 388.3 709 37.0
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 3.4e-90 337.0 740 33.0
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 7.6e-90 335.9 340 52.9
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.9e-88 331.3 324 55.6
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.4e-82 310.1 293 57.7
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 4.3e-77 293.5 262 60.7
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.0e-74 284.6 206 71.8
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.1e-67 260.8 267 55.8
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 9.9e-66 255.8 203 63.1
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 4.2e-64 250.4 163 73.0
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 7.9e-63 246.1 202 61.4
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 4.3e-61 240.4 332 44.0
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 2.8e-60 237.7 653 29.4
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 9.0e-59 232.6 174 66.7
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 2.1e-52 211.5 203 60.1
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 7.6e-50 203.0 176 57.4
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 5.0e-49 200.3 163 62.0
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 7.9e-47 193.0 168 58.9
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.9e-32 145.2 130 58.5
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 2.1e-31 141.7 147 55.8
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 3.9e-30 137.5 145 55.9
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.8e-30 136.3 158 55.1
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.3e-25 122.5 152 46.1
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 6.5e-25 120.2 163 46.0
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.3e-20 105.9 144 43.1
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 2.4e-11 75.1 50 70.0
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 9.1e-11 73.2 81 54.3
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 9.1e-11 73.2 51 60.8
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.2e-10 72.8 76 47.4
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.8e-09 67.8 35 97.1
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 8.0e-07 60.1 168 30.4


User provided reference genes

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