Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 2.9e-260 901.4 454 100.0
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 4.4e-232 807.7 452 89.4
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.1e-227 793.1 458 87.8
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.2e-226 789.6 467 86.1
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 5.7e-224 780.8 455 83.3
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 5.7e-224 780.8 455 83.3
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 4.1e-222 774.6 488 80.1
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.9e-220 768.5 454 83.0
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 6.6e-220 767.3 454 82.8
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 8.6e-220 766.9 455 82.2
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 1.9e-219 765.8 452 83.2
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 4.3e-219 764.6 455 82.6
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 4.3e-219 764.6 456 82.9
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 2.8e-218 761.9 467 81.2
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 6.1e-218 760.8 452 81.9
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 5.2e-217 757.7 452 82.7
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 7.5e-216 753.8 453 81.7
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 1.7e-215 752.7 452 81.9
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 4.9e-215 751.1 457 81.0
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 4.9e-215 751.1 452 81.4
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 4.9e-215 751.1 454 81.5
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 1.8e-214 749.2 456 81.6
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 4.1e-214 748.0 482 79.3
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 7.0e-214 747.3 452 80.5
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 1.2e-213 746.5 455 80.7
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 1.1e-211 740.0 452 79.6
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 1.1e-211 740.0 454 79.5
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 1.6e-210 736.1 452 79.0
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 3.6e-210 734.9 454 80.4
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 1.4e-209 733.0 449 80.0
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 1.4e-209 733.0 452 79.6
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 1.8e-209 732.6 452 79.6
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.3e-209 732.3 454 79.3
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 2.3e-209 732.3 453 80.4
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 2.6e-208 728.8 452 79.0
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 3.4e-208 728.4 452 79.2
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 7.5e-208 727.2 452 79.2
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 9.8e-208 726.9 460 78.3
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 2.9e-207 725.3 453 79.0
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 6.4e-207 724.2 452 78.1
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 6.4e-207 724.2 453 79.5
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 1.1e-206 723.4 454 77.8
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 3.2e-206 721.8 452 78.5
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 3.2e-206 721.8 457 79.6
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 4.1e-206 721.5 454 77.5
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 5.4e-206 721.1 452 77.9
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 7.0e-206 720.7 454 77.1
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 7.0e-206 720.7 452 78.5
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 9.2e-206 720.3 454 77.1
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 9.2e-206 720.3 452 78.1
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 2.7e-205 718.8 454 77.1
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 3.0e-204 715.3 454 77.3
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 3.0e-204 715.3 452 78.1
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 3.9e-204 714.9 485 74.6
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 5.0e-204 714.5 454 76.4
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.5e-203 710.3 462 77.1
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 8.1e-202 707.2 454 76.2
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.4e-201 706.4 455 76.7
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 6.8e-201 704.1 455 76.3
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 8.9e-201 703.7 452 75.7
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 1.2e-200 703.4 459 76.5
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 2.0e-200 702.6 451 75.2
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 1.9e-198 696.0 445 75.5
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 4.1e-198 694.9 452 74.1
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 2.7e-197 692.2 489 72.0
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 1.0e-196 690.3 476 71.8
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 1.3e-196 689.9 474 73.8
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 9.5e-195 683.7 461 75.7
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 1.6e-194 682.9 470 70.4
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 2.8e-194 682.2 481 71.5
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 4.7e-194 681.4 415 80.5
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 6.2e-194 681.0 495 72.5
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 4.0e-193 678.3 468 73.3
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 6.4e-191 671.0 450 70.9
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 5.4e-190 667.9 455 73.8
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.2e-189 666.8 452 74.1
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 2.7e-189 665.6 452 74.1
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.6e-186 655.2 408 77.7
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.4e-185 653.3 443 74.3
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.2e-184 650.2 452 69.0
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 2.7e-181 639.0 400 78.2
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.6e-181 638.3 515 64.7
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 1.5e-179 633.3 452 71.2
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 2.8e-178 629.0 452 70.1
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 4.8e-178 628.2 452 70.8
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 1.8e-177 626.3 556 61.2
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 2.6e-176 622.5 454 71.8
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 1.3e-170 603.6 385 77.4
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 8.1e-170 600.9 515 61.9
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 1.2e-168 597.0 404 73.5
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 1.7e-167 593.2 452 67.9
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 4.6e-165 585.1 356 82.3
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.9e-163 579.7 495 62.2
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.8e-156 556.6 486 60.3
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.6e-154 550.1 341 78.0
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 4.5e-152 542.0 433 64.4
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 1.3e-151 540.4 326 81.0
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 1.5e-147 526.9 296 88.5
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 4.3e-147 525.4 455 55.4
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 2.4e-137 493.0 456 52.9
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 3.0e-132 476.1 417 60.0
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 4.8e-130 468.8 296 78.4
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.4e-129 467.2 344 73.5
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 6.5e-127 458.4 506 51.2
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 8.2e-122 441.4 454 48.9
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 6.8e-116 421.8 269 77.0
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 6.3e-114 415.2 447 47.2
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 2.6e-107 393.3 447 44.7
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 5.9e-104 382.1 434 50.5
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.5e-102 377.5 231 81.4
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.0e-99 367.1 276 67.4
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.7e-96 356.7 206 84.0
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.1e-80 303.9 258 62.4
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 1.1e-73 281.6 243 61.3
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 7.8e-72 275.4 284 54.2
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.1e-68 265.0 186 70.4
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 6.9e-68 262.3 148 83.1
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 4.6e-64 249.6 226 54.0
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 5.1e-63 246.1 173 69.9
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 8.1e-61 238.8 326 46.9
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 4.0e-60 236.5 454 32.6
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 2.4e-57 227.3 520 30.6
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 2.3e-55 220.7 456 30.7
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.3e-50 204.9 535 27.7
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.3e-47 194.1 130 72.3
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.8e-37 160.6 97 75.3
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.0e-34 152.1 111 73.9
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.9e-33 147.9 100 65.0
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.9e-33 147.9 100 65.0
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.2e-33 147.1 118 58.5
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 6.9e-28 129.4 96 62.5
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.0e-23 115.5 71 81.7
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 8.8e-23 112.5 70 80.0
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 4.4e-22 110.2 70 78.6
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.1e-20 105.5 81 60.5
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.4e-20 105.1 58 84.5
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 5.3e-20 103.2 183 43.2
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 5.5e-17 93.2 58 74.1
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.4e-15 88.6 64 64.1
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.4e-15 88.6 52 80.8
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.8e-15 88.2 57 71.9
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.8e-12 78.2 52 75.0
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.4e-12 77.8 57 61.4
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 7.2e-09 66.2 88 44.3
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 3.6e-08 63.9 70 52.9
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 3.0e-07 60.8 38 71.1
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 5.7e-06 56.6 39 71.8


User provided reference genes

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