Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 0.0e+00 1226.5 616 100.0
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 0.0e+00 1221.8 616 99.5
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 0.0e+00 1105.5 622 89.1
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 0.0e+00 1094.3 617 88.5
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 0.0e+00 1092.8 616 87.7
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 0.0e+00 1086.6 627 87.6
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 5.1e-308 1060.4 616 85.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 6.6e-308 1060.1 621 84.9
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.3e-307 1057.7 617 85.4
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 8.1e-306 1053.1 617 84.6
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.4e-305 1051.6 618 84.3
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 9.0e-305 1049.7 616 84.7
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 2.0e-304 1048.5 610 86.1
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 5.8e-304 1047.0 618 83.8
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.9e-303 1044.6 616 83.6
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 8.4e-303 1043.1 625 83.7
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.8e-300 1035.4 621 83.1
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.8e-300 1035.4 619 84.0
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 5.1e-300 1033.9 618 83.7
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 8.7e-300 1033.1 616 82.0
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.5e-299 1032.3 615 83.7
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 4.3e-299 1030.8 622 81.5
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.1e-298 1028.5 623 83.1
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 4.8e-298 1027.3 593 84.3
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 1.1e-297 1026.2 629 81.6
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.5e-296 1022.3 622 82.5
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.5e-296 1022.3 622 81.0
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 2.6e-296 1021.5 622 81.5
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 2.6e-296 1021.5 605 84.3
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.5e-296 1020.8 617 81.5
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 5.8e-296 1020.4 629 82.2
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 7.6e-296 1020.0 594 84.0
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 620 81.9
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.9e-294 1015.4 618 81.1
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 2.5e-294 1015.0 630 81.1
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 9.3e-294 1013.1 616 81.3
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 9.3e-294 1013.1 619 82.9
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 620 80.8
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 2.1e-293 1011.9 649 80.0
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.7e-293 1011.5 622 80.2
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 3.5e-293 1011.1 616 81.8
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 6.0e-293 1010.4 616 81.7
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 616 81.3
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 3.0e-292 1008.1 633 80.6
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 6.7e-292 1006.9 616 80.7
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 3.3e-291 1004.6 616 80.4
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 619 80.1
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 4.3e-291 1004.2 627 80.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 5.7e-291 1003.8 616 80.8
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 5.7e-291 1003.8 616 81.0
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 7.4e-291 1003.4 618 81.6
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 9.6e-291 1003.0 618 80.4
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 2.8e-290 1001.5 620 80.3
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 616 81.0
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 4.8e-290 1000.7 655 77.7
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 619 79.5
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 6.2e-290 1000.3 603 81.8
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.4e-289 998.4 616 79.7
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.3e-289 997.3 616 79.7
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 5.3e-289 997.3 618 79.8
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 1.2e-288 996.1 621 79.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 2.6e-288 995.0 616 80.2
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 2.6e-288 995.0 616 79.9
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.6e-288 995.0 616 79.5
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.6e-288 995.0 616 79.5
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.6e-288 995.0 616 79.9
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 4.5e-288 994.2 622 79.4
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 5.8e-288 993.8 635 79.5
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.3e-287 992.6 621 80.0
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 3.8e-287 991.1 558 85.3
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 5.0e-287 990.7 619 80.1
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.0e-287 990.7 628 79.9
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 5.0e-287 990.7 693 74.9
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 5.0e-287 990.7 558 85.5
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 6.5e-287 990.3 617 78.6
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 8.4e-287 989.9 599 81.6
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.9e-286 988.8 604 81.1
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.9e-286 988.8 616 79.5
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 1.9e-286 988.8 616 79.4
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.9e-286 988.8 616 79.5
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 1.9e-286 988.8 616 79.4
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 1.9e-286 988.8 616 79.5
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.9e-286 988.8 616 79.1
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.5e-286 988.4 619 79.5
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 4.2e-286 987.6 621 79.4
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.2e-286 987.6 616 79.2
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 4.2e-286 987.6 606 80.0
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 7.1e-286 986.9 616 79.4
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 9.3e-286 986.5 595 82.0
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.2e-285 986.1 621 79.1
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.2e-285 986.1 618 79.3
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 2.1e-285 985.3 616 79.2
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.7e-285 984.9 591 82.1
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 2.7e-285 984.9 616 79.4
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 3.5e-285 984.6 617 78.6
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 6.1e-285 983.8 616 79.2
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 1.0e-284 983.0 618 79.3
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 1.0e-284 983.0 618 79.3
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.3e-284 982.6 616 79.1
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 2.3e-284 981.9 620 79.2
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.3e-284 981.9 617 78.9
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 8.7e-284 979.9 619 79.0
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.5e-283 978.4 601 81.4
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 3.3e-283 978.0 616 78.6
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 4.3e-283 977.6 630 77.6
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 6.3e-282 973.8 650 75.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 2.2e-279 965.3 527 88.2
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.2e-278 961.1 634 75.7
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 2.7e-277 958.4 626 78.8
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 7.9e-277 956.8 623 77.4
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.2e-274 948.7 572 80.1
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 7.9e-269 930.2 620 74.2
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.0e-267 925.6 633 75.8
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.0e-265 917.1 618 74.9
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 1.5e-264 916.0 539 83.7
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.0e-264 915.6 608 73.8
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-263 913.3 564 80.1
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.1e-262 909.8 571 76.4
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 2.3e-260 902.1 627 74.8
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 2.8e-258 895.2 575 74.4
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 9.1e-257 890.2 527 82.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 3.0e-244 848.6 625 69.0
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.0e-239 831.2 620 69.5
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 4.0e-236 821.6 561 70.2
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 9.8e-235 817.0 590 67.5
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 3.1e-228 795.4 490 80.8
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.3e-226 790.0 490 78.4
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 3.3e-222 775.4 433 86.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 4.7e-221 771.5 489 77.1
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 1.5e-219 766.5 490 78.4
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 6.4e-218 761.1 544 67.1
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 7.3e-214 747.7 490 77.1
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.8e-212 743.0 426 84.7
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 1.9e-209 733.0 433 81.3
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.6e-208 728.4 438 81.1
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.3e-199 699.5 565 60.2
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 6.6e-199 698.0 403 85.6
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 6.7e-175 618.2 433 72.1
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 6.1e-168 595.1 600 51.5
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.5e-161 573.2 312 88.8
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 9.1e-148 528.1 499 61.1
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 2.4e-132 476.9 340 73.8
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 9.8e-126 454.9 287 79.4
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 7.8e-107 392.1 277 69.0
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 2.0e-94 350.9 216 77.3
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 1.9e-81 307.8 210 79.0
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 3.6e-80 303.5 212 75.5
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 6.7e-74 282.7 557 33.2
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.4e-69 266.2 150 84.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 9.3e-60 235.7 131 84.0
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 5.1e-58 229.9 133 78.9
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 8.2e-56 222.6 126 83.3
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 2.4e-55 221.1 184 66.8
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 5.0e-53 213.4 116 91.4
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 6.5e-53 213.0 109 92.7
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.1e-49 202.2 115 81.7
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 3.3e-49 200.7 114 79.8
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.8e-45 187.2 144 66.0
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.0e-45 186.8 105 81.0
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 6.5e-45 186.4 115 77.4
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 1.2e-43 182.2 251 47.8
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.5e-41 175.3 138 71.0
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.4e-36 158.7 234 46.6
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.6e-35 155.2 112 71.4
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 8.5e-29 132.9 116 62.1
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 1.4e-26 125.6 61 96.7
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.7e-24 118.6 70 74.3
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 1.3e-21 109.0 56 92.9
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 9.4e-20 102.8 212 34.9
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 1.7e-16 92.0 184 31.5
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.8e-16 91.3 89 60.7
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 2.7e-14 84.7 67 61.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 5.0e-13 80.5 94 55.3


User provided reference genes

Program Settings