Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 8.5e-57 223.4 109 100.0
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 5.2e-22 107.8 86 65.1
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.7e-17 92.8 137 43.8
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 5.0e-17 91.3 82 59.8
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 8.6e-17 90.5 137 42.3
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.3e-16 88.6 137 40.9
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 1.4e-14 83.2 81 58.0
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.0e-14 82.0 138 39.1
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 5.2e-14 81.3 143 38.5
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 2.0e-13 79.3 137 41.6
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 9.8e-13 77.0 137 39.4
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 9.8e-13 77.0 137 39.4
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 9.8e-13 77.0 141 38.3
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 4.9e-12 74.7 137 39.4
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 6.4e-12 74.3 137 38.0
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 6.4e-12 74.3 138 37.7
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 8.3e-12 73.9 137 38.7
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 8.3e-12 73.9 118 38.1
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 8.3e-12 73.9 137 37.2
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.1e-11 73.6 136 36.8
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.1e-11 73.6 136 36.8
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.1e-11 73.6 138 37.0
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 1.4e-11 73.2 140 35.0
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 1.4e-11 73.2 138 37.7
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.4e-11 72.4 138 37.0
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 2.4e-11 72.4 149 37.6
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 2.4e-11 72.4 149 37.6
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 2.4e-11 72.4 138 37.0
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 2.4e-11 72.4 138 37.0
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 2.4e-11 72.4 137 37.2
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 2.4e-11 72.4 138 37.7
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.4e-11 72.4 137 36.5
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.2e-11 72.0 138 36.2
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 3.2e-11 72.0 122 41.0
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 3.2e-11 72.0 135 37.0
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 3.2e-11 72.0 148 35.8
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 37.7
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 36.2
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 36.2
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 37.7
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 37.7
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 37.7
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 37.7
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 4.1e-11 71.6 138 37.7
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 5.4e-11 71.2 138 36.2
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 5.4e-11 71.2 167 34.7
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 5.4e-11 71.2 138 36.2
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 5.4e-11 71.2 138 36.2
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 5.4e-11 71.2 138 36.2
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 5.4e-11 71.2 138 36.2
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 5.4e-11 71.2 138 36.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.4e-11 71.2 138 36.2
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 7.0e-11 70.9 137 35.8
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 7.0e-11 70.9 137 35.8
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.0e-11 70.9 34 91.2
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 9.2e-11 70.5 138 36.2
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 9.2e-11 70.5 138 37.7
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.2e-10 70.1 138 35.5
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 1.6e-10 69.7 138 37.0
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.0e-10 69.3 138 35.5
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 2.0e-10 69.3 138 33.3
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 2.0e-10 69.3 138 37.0
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 2.0e-10 69.3 138 36.2
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 2.0e-10 69.3 138 36.2
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.0e-10 69.3 138 37.0
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 3.5e-10 68.6 134 35.8
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 3.5e-10 68.6 147 34.7
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 3.5e-10 68.6 137 35.8
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 4.6e-10 68.2 138 34.8
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 6.0e-10 67.8 138 35.5
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 6.0e-10 67.8 138 33.3
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 6.0e-10 67.8 138 35.5
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 6.0e-10 67.8 137 35.0
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 6.0e-10 67.8 138 34.8
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 7.8e-10 67.4 138 34.1
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.0e-09 67.0 137 35.0
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-09 66.6 148 33.1
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 1.3e-09 66.6 138 34.1
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-09 66.6 138 34.8
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-09 66.6 138 34.8
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-09 66.6 138 34.8
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 1.7e-09 66.2 167 32.9
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 1.7e-09 66.2 138 33.3
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.7e-09 66.2 157 31.8
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 1.7e-09 66.2 151 33.1
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.7e-09 66.2 135 35.6
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 1.7e-09 66.2 138 34.8
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 1.7e-09 66.2 138 34.8
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 2.3e-09 65.9 141 32.6
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 2.3e-09 65.9 61 52.5
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 2.3e-09 65.9 138 34.8
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 3.0e-09 65.5 62 53.2
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 3.0e-09 65.5 140 34.3
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 5.0e-09 64.7 135 34.1
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 8.6e-09 63.9 40 80.0
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 8.6e-09 63.9 136 35.3
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 1.1e-08 63.5 40 70.0
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.1e-08 63.5 138 34.1
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 1.1e-08 63.5 35 80.0
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 1.1e-08 63.5 126 33.3
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.9e-08 62.8 138 31.9
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 1.9e-08 62.8 135 33.3
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 1.9e-08 62.8 135 33.3
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 1.9e-08 62.8 79 45.6
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 2.5e-08 62.4 61 49.2
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 3.3e-08 62.0 40 77.5
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 3.3e-08 62.0 42 71.4
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 5.6e-08 61.2 59 57.6
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 9.5e-08 60.5 158 29.7
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 9.5e-08 60.5 35 82.9
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 9.5e-08 60.5 62 50.0
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 1.2e-07 60.1 138 34.1
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 1.6e-07 59.7 138 34.1
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-07 59.7 138 34.1
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.6e-07 59.7 138 34.1
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.6e-07 59.7 138 34.1
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.6e-07 59.7 138 34.1
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.6e-07 59.7 138 34.1
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.8e-07 58.9 160 32.5
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.6e-07 58.5 138 33.3
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.6e-07 58.5 138 33.3
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.6e-07 58.5 138 33.3
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 3.6e-07 58.5 137 31.4
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 3.6e-07 58.5 137 31.4
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 3.6e-07 58.5 137 31.4
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 3.6e-07 58.5 61 52.5
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.7e-07 58.2 35 80.0
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 4.7e-07 58.2 140 31.4
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 8.0e-07 57.4 154 29.2
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 1.1e-06 57.0 40 70.0
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 1.1e-06 57.0 62 46.8
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.4e-06 56.6 45 66.7
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 1.4e-06 56.6 40 67.5
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.4e-06 56.6 61 42.6
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.4e-06 56.6 61 42.6
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.4e-06 56.6 61 42.6
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 1.8e-06 56.2 81 40.7
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 1.8e-06 56.2 61 45.9
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 2.3e-06 55.8 45 66.7
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 3.1e-06 55.5 40 65.0
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.1e-06 55.5 138 32.6
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 3.1e-06 55.5 43 62.8
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 3.1e-06 55.5 61 44.3
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 5.2e-06 54.7 45 64.4
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 5.2e-06 54.7 35 74.3
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 5.2e-06 54.7 61 44.3
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 6.8e-06 54.3 62 45.2
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 6.8e-06 54.3 40 67.5
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 6.8e-06 54.3 61 42.6
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 8.9e-06 53.9 61 39.3
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 8.9e-06 53.9 141 30.5


User provided reference genes

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