Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-43 179.5 90 100.0
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-43 179.5 90 100.0
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-40 169.1 90 94.4
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-40 167.9 91 94.5
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-38 161.8 90 92.2
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-37 159.5 90 90.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.1e-37 158.7 90 91.1
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-36 156.0 100 82.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 8.9e-28 126.7 113 58.4
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.9e-27 123.2 96 69.8
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-25 119.8 114 57.0
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.4e-25 118.6 114 55.3
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 7.1e-25 117.1 105 56.2
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.6e-24 115.9 114 56.1
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.0e-23 113.2 113 52.2
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.0e-23 113.2 112 50.0
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.3e-23 112.1 101 59.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 8.6e-23 110.2 98 58.2
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 4.3e-22 107.8 113 48.7
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.2e-21 106.3 98 55.1
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.8e-21 105.1 113 49.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 4.7e-21 104.4 110 49.1
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 4.7e-21 104.4 105 51.4
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 4.7e-21 104.4 111 46.8
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 6.2e-21 104.0 105 52.4
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.2e-21 104.0 114 49.1
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 8.1e-21 103.6 106 50.9
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-20 103.2 102 56.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.8e-20 102.4 99 52.5
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 3.1e-20 101.7 108 50.0
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.0e-20 101.3 105 49.5
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.9e-20 100.1 105 49.5
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.2e-19 99.8 106 50.9
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.6e-19 98.6 100 51.0
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 2.6e-19 98.6 98 52.0
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 4.4e-19 97.8 105 48.6
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 4.4e-19 97.8 96 52.1
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.7e-18 95.9 105 47.6
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.7e-18 95.9 100 48.0
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.7e-18 95.9 100 51.0
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 2.2e-18 95.5 110 47.3
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 3.8e-18 94.7 112 42.9
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.8e-18 94.7 103 46.6
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 4.9e-18 94.4 101 48.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.9e-17 92.4 109 45.0
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.4e-17 92.0 100 47.0
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 3.2e-17 91.7 103 47.6
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.2e-17 91.3 99 48.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 5.4e-17 90.9 110 44.5
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 5.4e-17 90.9 101 49.5
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 5.4e-17 90.9 97 49.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 5.4e-17 90.9 108 44.4
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 7.1e-17 90.5 100 47.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 7.1e-17 90.5 100 47.0
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 7.1e-17 90.5 95 50.5
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 9.2e-17 90.1 106 46.2
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 9.2e-17 90.1 97 48.5
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 9.2e-17 90.1 97 45.4
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.1e-16 89.0 106 46.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 3.5e-16 88.2 98 46.9
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.5e-16 88.2 95 46.3
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.5e-16 88.2 94 47.9
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 3.5e-16 88.2 107 43.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 4.6e-16 87.8 96 46.9
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 4.6e-16 87.8 98 45.9
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 4.6e-16 87.8 95 47.4
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.6e-16 87.8 100 47.0
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.3e-15 86.3 106 41.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.7e-15 85.9 109 45.0
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 3.0e-15 85.1 96 45.8
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.1e-15 84.3 106 41.5
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.1e-15 84.3 99 46.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.6e-15 84.0 95 47.4
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 8.7e-15 83.6 92 43.5
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.1e-14 83.2 96 42.7
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.5e-14 82.8 96 44.8
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.5e-14 82.8 95 46.3
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.5e-14 82.8 95 46.3
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.5e-14 82.0 110 42.7
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.5e-14 82.0 95 46.3
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.3e-14 81.6 107 39.3
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.3e-14 81.6 100 41.0
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 3.3e-14 81.6 96 43.8
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.3e-14 81.3 96 45.8
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 9.6e-14 80.1 111 40.5
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.6e-13 79.3 101 40.6
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.6e-13 79.3 100 44.0
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.6e-13 79.3 98 45.9
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.8e-13 78.6 96 39.6
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.8e-13 78.6 105 42.9
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.8e-13 78.6 105 42.9
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.8e-13 78.6 90 47.8
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.6e-13 78.2 95 45.3
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 3.6e-13 78.2 85 44.7
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 4.7e-13 77.8 98 39.8
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 6.2e-13 77.4 100 42.0
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 8.1e-13 77.0 102 38.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 8.1e-13 77.0 102 38.2
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.1e-12 76.6 99 42.4
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-12 76.6 100 41.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.1e-12 76.6 100 41.0
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.1e-12 76.6 107 43.0
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.4e-12 76.3 100 44.0
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.8e-12 75.9 99 42.4
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 4.0e-12 74.7 66 57.6
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 5.3e-12 74.3 85 43.5
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 6.9e-12 73.9 97 39.2
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 9.0e-12 73.6 109 38.5
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.0e-11 72.4 97 40.2
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 2.0e-11 72.4 97 40.2
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.0e-11 72.4 97 40.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.6e-11 72.0 102 39.2
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.4e-11 71.6 95 38.9
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 4.4e-11 71.2 93 41.9
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.4e-11 71.2 100 37.0
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.8e-11 70.9 104 43.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 5.8e-11 70.9 97 37.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.2e-10 68.9 101 40.6
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.9e-10 68.6 104 41.3
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.8e-10 68.2 59 54.2
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 3.2e-09 65.1 103 39.8
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 4.2e-09 64.7 85 36.5
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 4.2e-09 64.7 92 38.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.6e-08 62.8 103 42.7
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 6.0e-08 60.8 100 35.0
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 2.3e-07 58.9 75 44.0
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 3.9e-07 58.2 84 34.5
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.5e-06 56.2 33 75.8


User provided reference genes

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