Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 8.9e-176 620.2 312 100.0
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 6.5e-126 454.5 361 69.5
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.2e-101 371.3 377 56.0
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 1.1e-96 357.5 374 56.4
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 1.1e-96 357.5 390 54.1
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 1.4e-96 357.1 414 51.0
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.8e-96 356.7 380 54.5
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.1e-96 355.9 380 54.7
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.1e-96 355.5 373 56.8
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 2.0e-95 353.2 308 64.3
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 2.2e-94 349.7 386 52.3
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 3.8e-94 349.0 386 53.9
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.8e-94 349.0 405 50.4
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 4.2e-93 345.5 392 52.0
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 2.3e-91 339.7 412 48.8
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 8.8e-91 337.8 389 50.6
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 1.2e-90 337.4 389 52.4
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 1.5e-90 337.0 381 51.7
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.6e-90 336.3 398 51.0
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 3.4e-90 335.9 405 50.4
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.7e-90 335.1 406 49.0
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.5e-90 334.7 385 52.7
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.7e-89 333.6 406 48.5
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.2e-89 333.2 387 51.9
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.2e-89 333.2 398 50.8
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 3.7e-89 332.4 409 49.6
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.1e-88 330.9 398 50.3
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-88 330.9 359 55.4
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 1.8e-88 330.1 389 51.9
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 1.8e-88 330.1 426 49.1
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 4.1e-88 328.9 405 51.4
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 7.0e-88 328.2 413 49.4
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 7.0e-88 328.2 400 50.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 2.0e-87 326.6 387 50.6
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.1e-85 320.9 419 48.2
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 1.5e-85 320.5 398 50.3
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.9e-85 320.1 409 48.2
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 3.2e-85 319.3 409 47.7
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 9.5e-85 317.8 396 50.3
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.6e-84 315.8 403 47.9
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 4.7e-84 315.5 411 48.7
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 4.7e-84 315.5 385 49.9
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 6.1e-84 315.1 410 47.1
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 8.0e-84 314.7 405 48.6
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 4.0e-83 312.4 405 47.4
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 1.2e-82 310.8 458 44.1
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 4.4e-82 308.9 423 46.8
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 4.4e-82 308.9 411 47.7
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.3e-81 307.4 389 49.4
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 2.8e-81 306.2 449 44.3
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 3.7e-81 305.8 408 48.0
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 8.3e-81 304.7 391 49.1
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 8.3e-81 304.7 338 53.3
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 1.1e-80 304.3 440 45.5
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-80 303.9 389 49.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 2.4e-80 303.1 396 48.5
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 1.2e-79 300.8 418 45.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 1.6e-79 300.4 432 44.2
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 2.7e-79 299.7 389 48.6
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 1.3e-78 297.4 390 47.4
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.7e-78 297.0 447 43.8
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 3.8e-78 295.8 266 64.3
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 1.1e-77 294.3 445 43.1
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.1e-77 294.3 397 47.9
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 3.3e-77 292.7 444 43.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 5.6e-77 292.0 407 47.7
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 7.3e-77 291.6 400 45.8
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 9.5e-77 291.2 444 43.2
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 3.6e-76 289.3 392 46.4
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.1e-76 288.5 445 42.7
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-75 287.3 444 42.3
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.0e-75 286.2 400 45.5
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 4.0e-75 285.8 445 42.5
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.0e-75 285.8 445 42.5
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 6.8e-75 285.0 468 41.9
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 2.0e-74 283.5 426 44.4
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 9.8e-74 281.2 406 45.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 2.2e-73 280.0 387 46.8
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 2.9e-73 279.6 470 40.9
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 6.4e-73 278.5 416 44.5
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.1e-72 277.7 412 46.1
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 3.2e-72 276.2 460 42.2
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 4.1e-72 275.8 375 48.0
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.6e-71 273.9 478 40.4
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 2.7e-71 273.1 424 42.2
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 4.6e-71 272.3 385 45.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.6e-71 272.3 389 44.7
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.0e-70 271.2 422 41.9
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.3e-70 270.8 395 45.6
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 3.0e-70 269.6 391 44.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 3.0e-70 269.6 394 44.9
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 8.6e-70 268.1 429 42.2
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 1.5e-69 267.3 385 46.8
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 5.6e-69 265.4 360 45.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 1.2e-68 264.2 474 40.1
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 2.8e-68 263.1 402 44.0
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 3.1e-67 259.6 382 44.8
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 1.5e-66 257.3 388 43.6
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.0e-66 256.9 388 44.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 2.6e-66 256.5 399 43.6
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 4.4e-66 255.8 388 44.3
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 1.3e-65 254.2 417 42.4
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.3e-65 254.2 454 37.4
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 2.4e-64 250.0 410 40.7
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 4.1e-64 249.2 391 43.2
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 6.6e-62 241.9 449 38.8
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 4.3e-61 239.2 438 37.7
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 5.6e-61 238.8 306 49.7
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 3.6e-60 236.1 459 39.9
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.2e-60 235.3 367 44.1
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 4.0e-59 232.6 387 40.6
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 1.4e-56 224.2 136 82.4
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 1.4e-56 224.2 241 56.0
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.6e-55 220.7 300 44.7
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 7.8e-55 218.4 222 57.7
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 1.0e-54 218.0 133 82.0
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 2.8e-52 209.9 351 40.7
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.1e-51 208.0 137 77.4
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 3.5e-47 193.0 238 50.0
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 1.3e-46 191.0 426 33.8
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 7.3e-45 185.3 357 36.7
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 4.7e-44 182.6 376 37.5
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 8.4e-41 171.8 199 52.8
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.4e-35 154.5 96 80.2
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 5.3e-35 152.5 399 32.3
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.2e-34 151.4 408 31.9
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.3e-33 147.9 312 38.1
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 5.6e-29 132.5 97 70.1
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 9.6e-29 131.7 133 57.1
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 2.9e-25 120.2 128 50.8
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.0e-23 112.5 133 51.1
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 1.3e-22 111.3 129 53.5
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 2.3e-22 110.5 287 33.1
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 2.1e-20 104.0 279 30.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.8e-20 103.6 135 48.1
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.6e-18 97.1 97 56.7
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 1.9e-16 90.9 103 49.5
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 1.9e-16 90.9 103 49.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.3e-14 84.7 49 79.6
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 5.7e-13 79.3 90 47.8
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 5.7e-13 79.3 90 47.8
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 6.3e-12 75.9 90 45.6
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.4e-11 74.7 50 66.0
vmacro14248 Vaccinium macrocarpon HOM05D005375 ORTHO05D426817 7.9e-07 58.9 40 77.5


User provided reference genes

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