Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025717 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 3.3e-66 255.0 137 100.0
CSS0001102 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 1.7e-62 242.7 136 89.7
CSS0039871 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 4.9e-62 241.1 137 89.1
Lj2g0013241 Lotus japonicus HOM05D000183 ORTHO05D000100 5.2e-27 124.8 136 56.6
Manes.01G187900 Manihot esculenta HOM05D000183 ORTHO05D000100 4.4e-26 121.7 140 60.7
Cpa.g.sc183.29 Carica papaya HOM05D000183 ORTHO05D000100 7.4e-26 120.9 136 56.6
Haze_12035 Corylus avellana HOM05D000183 ORTHO05D000100 7.4e-26 120.9 137 58.4
CAN.G512.3 Capsicum annuum HOM05D000183 ORTHO05D000100 1.7e-25 119.8 149 54.4
Sabra08G0112800 Salix brachista HOM05D000183 ORTHO05D000100 2.2e-25 119.4 136 56.6
Duzib248G1622 Durio zibethinus HOM05D000183 ORTHO05D000100 2.8e-25 119.0 137 56.9
Cfa009006 Carpinus fangiana HOM05D000183 ORTHO05D000100 6.3e-25 117.9 137 56.9
Peaxi162Scf00503g00427 Petunia axillaris HOM05D000183 ORTHO05D000100 6.3e-25 117.9 138 57.2
Glyma.01G044600 Glycine max HOM05D000183 ORTHO05D000100 1.1e-24 117.1 136 53.7
Glyma.02G019100 Glycine max HOM05D000183 ORTHO05D000100 1.1e-24 117.1 136 56.6
Manes.05G098900 Manihot esculenta HOM05D000183 ORTHO05D000100 1.1e-24 117.1 139 61.2
Nitab4.5_0003586g0060 Nicotiana tabacum HOM05D000183 ORTHO05D000100 1.1e-24 117.1 129 57.4
Medtr5g039000 Medicago truncatula HOM05D000183 ORTHO05D000100 1.8e-24 116.3 136 55.1
QL03p064886 Quercus lobata HOM05D000183 ORTHO05D000100 2.4e-24 115.9 135 56.3
Thecc.02G348600 Theobroma cacao HOM05D000183 ORTHO05D000100 3.1e-24 115.5 136 58.1
Duzib268G1502 Durio zibethinus HOM05D000183 ORTHO05D000100 5.3e-24 114.8 140 56.4
Phvul.002G088600 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 7.0e-24 114.4 136 56.6
Potri.008G148200 Populus trichocarpa HOM05D000183 ORTHO05D000100 7.0e-24 114.4 136 56.6
Ca_24251_v3 Cicer arietinum L. HOM05D000183 ORTHO05D000100 9.1e-24 114.0 136 55.9
MELO3C012079.2 Cucumis melo HOM05D000183 ORTHO05D000100 9.1e-24 114.0 139 56.1
CsaV3_5G032510 Cucumis sativus L. HOM05D000183 ORTHO05D000100 9.1e-24 114.0 139 56.1
Actinidia31197 Actinidia chinensis HOM05D000183 ORTHO05D000100 1.2e-23 113.6 136 55.1
CiPaw.06G082600 Carya illinoinensis HOM05D000183 ORTHO05D000100 1.2e-23 113.6 136 57.4
CSS0014547 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 2.0e-23 112.8 136 52.2
HanXRQChr17g0545131 Helianthus annuus HOM05D000183 ORTHO05D000100 2.0e-23 112.8 144 56.9
VMungo1215G0568 Vigna mungo HOM05D000183 ORTHO05D000100 2.0e-23 112.8 136 56.6
CiPaw.05G137900 Carya illinoinensis HOM05D000183 ORTHO05D000100 5.9e-23 111.3 136 56.6
ClCG05G024450 Citrullus lanatus HOM05D000183 ORTHO05D000100 5.9e-23 111.3 138 54.3
Duzib251G0489 Durio zibethinus HOM05D000183 ORTHO05D000100 7.7e-23 110.9 137 55.5
Actinidia08220 Actinidia chinensis HOM05D000183 ORTHO05D000100 1.0e-22 110.5 141 55.3
FvH4_4g31640 Fragaria vesca HOM05D000183 ORTHO05D000100 1.0e-22 110.5 141 54.6
FAN12G0149 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.0e-22 110.5 141 54.6
Phvul.003G067700 Phaseolus vulgaris HOM05D000183 ORTHO05D000100 1.0e-22 110.5 136 55.9
vmacro01238 Vaccinium macrocarpon HOM05D000183 ORTHO05D000100 1.0e-22 110.5 136 52.9
FAN17G1670 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.3e-22 110.2 141 54.6
FAN22G1487 Fragaria x ananassa HOM05D000183 ORTHO05D000100 1.3e-22 110.2 141 54.6
TPR.G4053 Trifolium pratense HOM05D000183 ORTHO05D000100 1.3e-22 110.2 136 52.9
TWI18G0832 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 1.3e-22 110.2 140 55.0
VMungo0251G1434 Vigna mungo HOM05D000183 ORTHO05D000100 1.3e-22 110.2 136 57.4
Actinidia19860 Actinidia chinensis HOM05D000183 ORTHO05D000100 1.7e-22 109.8 139 54.7
Glyma.08G298400 Glycine max HOM05D000183 ORTHO05D000100 1.7e-22 109.8 136 56.6
Gohir.D02G114400 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.7e-22 109.8 138 56.5
Gorai.005G139600 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.7e-22 109.8 138 56.5
Sed0011889 Sechium edule HOM05D000183 ORTHO05D000100 1.7e-22 109.8 141 51.8
FAN07G2154 Fragaria x ananassa HOM05D000183 ORTHO05D000100 2.2e-22 109.4 141 54.6
MSTRG.7818 Avicennia marina HOM05D000183 ORTHO05D000100 3.8e-22 108.6 136 54.4
CSS0042785 Camellia sinensis var. sinensis HOM05D000183 ORTHO05D000100 3.8e-22 108.6 136 50.7
Glyma.18G123500 Glycine max HOM05D000183 ORTHO05D000100 3.8e-22 108.6 136 56.6
vmacro16339 Vaccinium macrocarpon HOM05D000183 ORTHO05D000100 3.8e-22 108.6 138 53.6
Gohir.A03G099000 Gossypium hirsutum HOM05D000183 ORTHO05D000100 5.0e-22 108.2 138 55.8
TPR.G33276 Trifolium pratense HOM05D000183 ORTHO05D000100 6.5e-22 107.8 136 53.7
Medtr8g468210 Medicago truncatula HOM05D000183 ORTHO05D000100 1.5e-21 106.7 137 54.0
Lsat_1_v5_gn_3_50980 Lactuca sativa HOM05D000183 ORTHO05D000100 1.9e-21 106.3 148 54.7
Nn3g17169 Nelumbo nucifera HOM05D000183 ORTHO05D000100 2.5e-21 105.9 136 53.7
Psat4g171800 Pisum sativum HOM05D000183 ORTHO05D000100 2.5e-21 105.9 138 55.1
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 3.2e-21 105.5 133 57.9
Lalb_Chr10g0098131 Lupinus albus HOM05D000183 ORTHO05D000100 3.2e-21 105.5 136 52.9
Potri.010G093400 Populus trichocarpa HOM05D000183 ORTHO05D000100 3.2e-21 105.5 142 52.1
Nitab4.5_0003062g0050 Nicotiana tabacum HOM05D000183 ORTHO05D000100 4.2e-21 105.1 110 60.9
RcHm_v2.0_Chr4g0440141 Rosa chinensis HOM05D000183 ORTHO05D000100 5.5e-21 104.8 140 53.6
Ca_04761_v3 Cicer arietinum L. HOM05D000183 ORTHO05D000100 7.2e-21 104.4 137 53.3
Rhsim12G0061100 Rhododendron simsii HOM05D000183 ORTHO05D000100 7.2e-21 104.4 135 54.8
HanXRQChr15g0477251 Helianthus annuus HOM05D000183 ORTHO05D000100 1.2e-20 103.6 144 53.5
MD16G1076000 Malus domestica HOM05D000183 ORTHO05D000100 1.2e-20 103.6 138 52.9
Hma1.2p1_0598F.1_g186800 Hydrangea macrophylla HOM05D000183 ORTHO05D000100 2.7e-20 102.4 137 53.3
Lj3A1040T29 Lonicera japonica HOM05D000183 ORTHO05D000100 3.6e-20 102.1 139 52.5
ECA246G0346 Erigeron canadensis HOM05D000765 ORTHO05D000613 6.1e-20 101.3 143 50.3
CANSAT64G1378 Cannabis sativa HOM05D000183 ORTHO05D000100 8.0e-20 100.9 143 52.4
Sabra10G0065900 Salix brachista HOM05D000183 ORTHO05D000100 8.0e-20 100.9 136 52.9
TAR371G1003 Trochodendron aralioides HOM05D000183 ORTHO05D000100 8.0e-20 100.9 136 52.9
MSTRG.685 Avicennia marina HOM05D000183 ORTHO05D000100 1.4e-19 100.1 136 49.3
Gohir.A13G072700 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.4e-19 100.1 138 50.7
Gohir.D13G072800 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.4e-19 100.1 138 50.7
Gorai.013G083600 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.4e-19 100.1 138 50.7
Sopen05g003140 Solanum pennellii HOM05D000183 ORTHO05D000100 1.4e-19 100.1 147 48.3
Solyc05g007180.3 Solanum lycopersicum HOM05D000183 ORTHO05D000100 1.8e-19 99.8 148 48.0
TWI75G0126 Tripterygium wilfordii HOM05D000183 ORTHO05D000100 1.8e-19 99.8 138 51.4
MSTRG.2354 Avicennia marina HOM05D000183 ORTHO05D000100 2.3e-19 99.4 136 47.8
PGSC0003DMG400025614 Solanum tuberosum HOM05D000183 ORTHO05D000100 2.3e-19 99.4 149 47.7
Prupe.1G271400 Prunus persica HOM05D000183 ORTHO05D000100 3.0e-19 99.0 137 51.1
Ciclev10032279m.g Citrus clementina HOM05D000183 ORTHO05D000100 4.0e-19 98.6 140 50.7
AUR62005746 Chenopodium quinoa HOM05D000183 ORTHO05D000100 6.8e-19 97.8 142 46.5
Glyma.18G118500 Glycine max HOM05D000183 ORTHO05D000100 6.8e-19 97.8 136 52.2
SGA_v2.0_scaffold87G26949 Striga asiatica HOM05D000183 ORTHO05D000100 6.8e-19 97.8 140 47.1
Oeu045414.1 Olea europaea HOM05D000183 ORTHO05D000100 8.8e-19 97.4 135 51.1
EL10Ac6g13175 Beta vulgaris HOM05D000183 ORTHO05D000100 1.2e-18 97.1 140 47.9
Lalb_Chr16g0392611 Lupinus albus HOM05D000183 ORTHO05D000100 1.2e-18 97.1 136 47.8
BcaB05g24485 Brassica carinata HOM05D000183 ORTHO05D000100 1.5e-18 96.7 138 47.1
Cc11_g13310 Coffea canephora HOM05D000183 ORTHO05D000100 5.7e-18 94.7 136 51.5
MSTRG.13407 Avicennia marina HOM05D000183 ORTHO05D000100 7.5e-18 94.4 136 47.1
TAR622G1075 Trochodendron aralioides HOM05D000183 ORTHO05D000100 7.5e-18 94.4 136 50.0
TAR629G3390 Trochodendron aralioides HOM05D000183 ORTHO05D000100 2.2e-17 92.8 136 49.3
MD13G1074800 Malus domestica HOM05D000183 ORTHO05D000100 2.8e-17 92.4 138 51.4
Peaxi162Scf00026g00296 Petunia axillaris HOM05D000183 ORTHO05D000100 2.8e-17 92.4 143 53.1
Oeu000620.1 Olea europaea HOM05D000183 ORTHO05D000100 3.7e-17 92.0 136 47.8
Sed0011691 Sechium edule HOM05D000183 ORTHO05D000100 4.8e-17 91.7 145 47.6
GSVIVG01020033001 Vitis vinifera HOM05D000183 ORTHO05D000100 4.8e-17 91.7 137 49.6
Eucgr.G02520 Eucalyptus grandis HOM05D000183 ORTHO05D000100 6.3e-17 91.3 137 49.6
Oeu028296.1 Olea europaea HOM05D000183 ORTHO05D000100 1.1e-16 90.5 137 46.7
DCAR_007141 Daucus carota HOM05D000183 ORTHO05D000100 2.4e-16 89.4 143 47.6
TAR374G1120 Trochodendron aralioides HOM05D000183 ORTHO05D000100 2.4e-16 89.4 133 45.9
Hund25258 Selenicereus undatus HOM05D000183 ORTHO05D000100 5.3e-16 88.2 137 47.4
Sc11g0001760 Simmondsia chinensis HOM05D000183 ORTHO05D000100 5.3e-16 88.2 140 43.6
arahy.Tifrunner.gnm1.ann1.1QJ78E Arachis hypogaea HOM05D000183 ORTHO05D000100 9.1e-16 87.4 147 43.5
arahy.Tifrunner.gnm1.ann1.YS1RTV Arachis hypogaea HOM05D000183 ORTHO05D000100 9.1e-16 87.4 145 44.1
arahy.Tifrunner.gnm1.ann1.ZBAY9J Arachis hypogaea HOM05D000183 ORTHO05D000100 1.6e-15 86.7 163 42.3
Hund05897 Selenicereus undatus HOM05D000183 ORTHO05D000100 1.6e-15 86.7 141 48.9
Aqoxy3G03328 Aquilegia oxysepala HOM05D000183 ORTHO05D000100 5.9e-15 84.7 132 50.0
PSO017G2782 Papaver somniferum HOM05D000183 ORTHO05D000100 7.7e-15 84.3 134 43.3
PSO478G4715 Papaver somniferum HOM05D000183 ORTHO05D000100 7.7e-15 84.3 134 43.3
Ah.03g135310 Amaranthus hybridus HOM05D000183 ORTHO05D000100 1.3e-14 83.6 136 44.1
Aqoxy3G00708 Aquilegia oxysepala HOM05D000183 ORTHO05D000100 1.3e-14 83.6 136 46.3
Rhsim12G0131700 Rhododendron simsii HOM05D000183 ORTHO05D000100 2.9e-14 82.4 158 42.4
Aa31LG4G11020 Aethionema arabicum HOM05D000183 ORTHO05D000100 3.8e-14 82.0 139 41.0
THA.LOC104822106 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 6.5e-14 81.3 138 42.0
MBI05_g00389_MAGBIO Magnolia biondii HOM05D000183 ORTHO05D000100 2.5e-13 79.3 136 44.1
Nitab4.5_0008633g0010 Nicotiana tabacum HOM05D000183 ORTHO05D000100 2.5e-13 79.3 140 49.3
A02p16150 Brassica napus HOM05D000183 ORTHO05D000100 1.6e-12 76.6 138 39.9
unitig_749.g13237 Utricularia gibba HOM05D000183 ORTHO05D000100 1.6e-12 76.6 138 40.6
Gohir.D05G304200 Gossypium hirsutum HOM05D000183 ORTHO05D000100 4.7e-12 75.1 141 41.1
Atru.chr11.1833 Acer truncatum HOM05D000183 ORTHO05D000100 1.8e-11 73.2 160 37.5
C06p43580 Brassica napus HOM05D000183 ORTHO05D000100 1.8e-11 73.2 138 39.1
BcaC03g15123 Brassica carinata HOM05D000183 ORTHO05D000100 2.3e-11 72.8 138 39.1
A07p36200 Brassica napus HOM05D000183 ORTHO05D000100 2.3e-11 72.8 138 39.1
BraA07t31194Z Brassica rapa HOM05D000183 ORTHO05D000100 2.3e-11 72.8 138 39.1
DCAR_031035 Daucus carota HOM05D000183 ORTHO05D000100 2.3e-11 72.8 139 44.6
BolC2t08753H Brassica oleracea HOM05D000183 ORTHO05D000100 4.0e-11 72.0 137 39.4
MBI02_g33850_MAGBIO Magnolia biondii HOM05D000183 ORTHO05D000100 5.2e-11 71.6 135 41.5
Ah.02g131250 Amaranthus hybridus HOM05D000183 ORTHO05D000100 6.8e-11 71.2 111 46.8
BcaB03g14755 Brassica carinata HOM05D000183 ORTHO05D000100 6.8e-11 71.2 138 38.4
C02p26890 Brassica napus HOM05D000183 ORTHO05D000100 1.2e-10 70.5 138 38.4
Carub.0001s2402 Capsella rubella HOM05D000183 ORTHO05D000100 1.2e-10 70.5 137 39.4
SHI17590 Sapria himalayana HOM05D000183 ORTHO05D000100 1.2e-10 70.5 125 44.0
BcaC08g46424 Brassica carinata HOM05D000183 ORTHO05D000100 5.7e-10 68.2 138 37.7
BolC6t39430H Brassica oleracea HOM05D000183 ORTHO05D000100 5.7e-10 68.2 138 37.7
Nitab4.5_0000141g0300 Nicotiana tabacum HOM05D000183 ORTHO05D000100 7.5e-10 67.8 140 48.6
PGR119G0634 Punica granatum HOM05D000183 ORTHO05D000100 7.5e-10 67.8 127 37.8
THA.LOC104808759 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 7.5e-10 67.8 141 41.1
unitig_26.g10311 Utricularia gibba HOM05D000183 ORTHO05D000100 7.5e-10 67.8 137 39.4
HanXRQChr16g0516071 Helianthus annuus HOM05D000183 ORTHO05D000100 1.3e-09 67.0 140 40.0
Sp5g24890 Schrenkiella parvula HOM05D000183 ORTHO05D000100 1.3e-09 67.0 138 37.7
Gohir.A05G305000 Gossypium hirsutum HOM05D000183 ORTHO05D000100 2.8e-09 65.9 138 36.2
A07p13180 Brassica napus HOM05D000183 ORTHO05D000100 3.7e-09 65.5 135 40.0
Thhalv10018944m.g Eutrema salsugineum HOM05D000183 ORTHO05D000100 4.8e-09 65.1 138 38.4
CARHR062850 Cardamine hirsuta HOM05D000183 ORTHO05D000100 1.1e-08 63.9 138 34.8
Gorai.009G323600 Gossypium raimondii HOM05D000183 ORTHO05D000100 1.1e-08 63.9 138 39.1
DCAR_027400 Daucus carota HOM05D000183 ORTHO05D000100 1.4e-08 63.5 130 35.4
THA.LOC104822924 Tarenaya hassleriana HOM05D000183 ORTHO05D000100 1.4e-08 63.5 138 36.2
A08p27670 Brassica napus HOM05D000183 ORTHO05D000100 1.8e-08 63.2 136 37.5
BraA02t06674Z Brassica rapa HOM05D000183 ORTHO05D000100 1.8e-08 63.2 142 37.3
C08p22640 Brassica napus HOM05D000183 ORTHO05D000100 5.4e-08 61.6 136 36.8
BolC8t49902H Brassica oleracea HOM05D000183 ORTHO05D000100 5.4e-08 61.6 136 36.8
Migut.L01319 Erythranthe guttata HOM05D000183 ORTHO05D000100 5.4e-08 61.6 148 38.5
Gorai.006G022100 Gossypium raimondii HOM05D000183 ORTHO05D000100 5.4e-08 61.6 137 35.0
Dinv06528 Davidia involucrata HOM05D000183 ORTHO05D000100 7.0e-08 61.2 135 39.3
Carub.0002s1646 Capsella rubella HOM05D000183 ORTHO05D000100 9.1e-08 60.8 138 36.2
AT1G69780 Arabidopsis thaliana HOM05D000183 ORTHO05D000100 1.2e-07 60.5 138 35.5
CDE12G0016 Ceratophyllum demersum HOM05D000183 ORTHO05D000100 1.2e-07 60.5 137 36.5
Gohir.D09G018800 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.2e-07 60.5 137 34.3
Gohir.A09G019350 Gossypium hirsutum HOM05D000183 ORTHO05D000100 1.6e-07 60.1 137 35.0
Thecc.04G078400 Theobroma cacao HOM05D000183 ORTHO05D000100 1.6e-07 60.1 136 33.8
Zm00001eb005440 Zea mays HOM05D000183 ORTHO05D000100 1.6e-07 60.1 146 34.2
Duzib264G0982 Durio zibethinus HOM05D000183 ORTHO05D000100 2.7e-07 59.3 136 34.6
Duzib264G0260 Durio zibethinus HOM05D000183 ORTHO05D000100 3.5e-07 58.9 137 34.3
AL2G28980 Arabidopsis lyrata HOM05D000183 ORTHO05D000100 4.5e-07 58.5 138 37.0
Duzib147G1144 Durio zibethinus HOM05D000183 ORTHO05D000100 1.7e-06 56.6 135 35.6
Dinv33741 Davidia involucrata HOM05D000183 ORTHO05D000100 2.3e-06 56.2 136 36.0
HPP92_016478 Vanilla planifolia HOM05D000183 ORTHO05D000100 2.9e-06 55.8 136 35.3
AT1G26960 Arabidopsis thaliana HOM05D000183 ORTHO05D000100 3.8e-06 55.5 137 36.5
CDE09G1389 Ceratophyllum demersum HOM05D000183 ORTHO05D000100 3.8e-06 55.5 136 30.9
CDE02G4278 Ceratophyllum demersum HOM05D000183 ORTHO05D000100 6.6e-06 54.7 136 30.9
Duzib187G0633 Durio zibethinus HOM05D000183 ORTHO05D000100 6.6e-06 54.7 136 33.1
Zm00001eb402220 Zea mays HOM05D000183 ORTHO05D000100 8.6e-06 54.3 144 32.6


User provided reference genes

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