Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025534 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 1.4e-78 296.2 149 100.0
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 8.3e-39 164.1 110 69.1
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.4e-38 163.3 110 70.0
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 2.4e-38 162.5 110 70.0
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 5.4e-38 161.4 109 71.6
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 7.1e-38 161.0 93 81.7
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 9.2e-38 160.6 111 71.2
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 2.1e-37 159.5 111 68.5
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.7e-37 159.1 107 72.0
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 4.6e-37 158.3 93 79.6
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.3e-36 156.8 110 66.4
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 2.3e-36 156.0 112 67.9
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 2.3e-36 156.0 111 69.4
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 5.1e-36 154.8 110 68.2
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 5.1e-36 154.8 111 67.6
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 5.1e-36 154.8 103 69.9
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 1.1e-35 153.7 111 65.8
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.1e-35 153.7 142 52.8
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 2.5e-35 152.5 93 77.4
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 2.5e-35 152.5 103 71.8
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 5.6e-35 151.4 106 67.9
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 7.3e-35 151.0 100 70.0
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 9.5e-35 150.6 111 65.8
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 9.5e-35 150.6 111 65.8
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 9.5e-35 150.6 111 64.0
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 9.5e-35 150.6 111 64.0
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 9.5e-35 150.6 108 65.7
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 1.2e-34 150.2 110 65.5
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.2e-34 150.2 100 73.0
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.2e-34 150.2 93 76.3
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 1.2e-34 150.2 110 65.5
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.6e-34 149.8 92 75.0
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 1.6e-34 149.8 114 67.5
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 1.6e-34 149.8 111 64.0
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 4.7e-34 148.3 107 69.2
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 6.2e-34 147.9 89 80.9
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 1.4e-33 146.7 92 73.9
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 1.4e-33 146.7 110 60.9
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.4e-33 146.7 110 64.5
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 1.8e-33 146.4 111 64.9
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 1.8e-33 146.4 106 65.1
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 1.8e-33 146.4 93 75.3
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 2.4e-33 146.0 87 80.5
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 5.2e-33 144.8 93 71.0
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 6.8e-33 144.4 110 60.0
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 6.8e-33 144.4 92 73.9
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 8.9e-33 144.1 108 66.7
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 1.5e-32 143.3 111 64.9
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.5e-32 143.3 111 64.9
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.5e-32 143.3 111 64.9
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 2.0e-32 142.9 110 61.8
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.0e-32 142.9 93 69.9
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 2.6e-32 142.5 110 61.8
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 2.6e-32 142.5 93 73.1
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 3.4e-32 142.1 93 71.0
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 4.4e-32 141.7 94 71.3
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 4.4e-32 141.7 110 60.0
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.4e-32 141.7 93 74.2
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 5.8e-32 141.4 93 68.8
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 5.8e-32 141.4 93 68.8
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 7.6e-32 141.0 93 72.0
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 7.6e-32 141.0 95 69.5
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 7.6e-32 141.0 110 61.8
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.3e-31 140.2 93 72.0
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 1.3e-31 140.2 110 59.1
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.3e-31 140.2 106 62.3
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 1.7e-31 139.8 93 72.0
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 1.7e-31 139.8 93 72.0
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 1.7e-31 139.8 93 72.0
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.7e-31 139.8 142 48.6
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 1.7e-31 139.8 110 62.7
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 2.2e-31 139.4 94 70.2
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 2.9e-31 139.0 95 68.4
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 2.9e-31 139.0 93 72.0
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.9e-31 139.0 110 59.1
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 2.9e-31 139.0 110 59.1
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 3.8e-31 138.7 109 59.6
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 4.9e-31 138.3 93 71.0
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 4.9e-31 138.3 91 72.5
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 4.9e-31 138.3 92 71.7
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 4.9e-31 138.3 109 59.6
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 4.9e-31 138.3 109 61.5
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 4.9e-31 138.3 107 62.6
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 6.4e-31 137.9 111 62.2
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 6.4e-31 137.9 93 72.0
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 8.4e-31 137.5 93 71.0
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 8.4e-31 137.5 142 48.6
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-30 137.1 93 72.0
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 1.1e-30 137.1 93 71.0
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.1e-30 137.1 93 71.0
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 1.1e-30 137.1 93 71.0
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.1e-30 137.1 93 71.0
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 1.1e-30 137.1 109 61.5
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 1.4e-30 136.7 93 72.0
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 3.2e-30 135.6 90 70.0
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.2e-30 135.6 111 61.3
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 3.2e-30 135.6 138 50.0
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 4.1e-30 135.2 93 66.7
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 4.1e-30 135.2 107 60.7
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 4.1e-30 135.2 142 47.2
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 9.2e-30 134.0 155 47.7
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 1.6e-29 133.3 106 61.3
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 3.5e-29 132.1 107 61.7
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 4.6e-29 131.7 90 66.7
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 1.3e-28 130.2 90 65.6
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 7.3e-27 124.4 92 65.2
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 2.1e-26 122.9 92 64.1
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.6e-26 122.1 93 59.1
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 3.8e-23 112.1 148 43.9
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.9e-22 109.8 112 52.7
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 2.4e-22 109.4 67 71.6
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 5.4e-22 108.2 69 68.1
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 2.3e-20 102.8 75 62.7
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 3.9e-20 102.1 103 52.4
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 1.1e-19 100.5 80 62.5
DCAR_024367 Daucus carota HOM05D005396 ORTHO05D006400 3.3e-19 99.0 63 74.6
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.6e-18 96.7 97 45.4
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.8e-18 95.9 68 67.6
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 9.9e-16 87.4 96 49.0
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 9.9e-16 87.4 96 49.0
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 3.2e-14 82.4 103 43.7
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 4.2e-14 82.0 84 42.9
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 9.3e-14 80.9 83 47.0
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.6e-13 80.1 92 47.8
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 1.6e-13 80.1 96 45.8
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 5.1e-12 75.1 95 44.2
Mapoly0185s0017 Marchantia polymorpha HOM05D005396 ORTHO05D006400 6.2e-10 68.2 80 38.8


User provided reference genes

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