Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 8.9e-279 963.0 498 100.0
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.7e-266 922.2 543 88.2
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.1e-227 792.3 501 81.0
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 3.8e-205 718.4 502 73.7
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.2e-198 696.8 511 71.0
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 4.5e-198 694.9 503 72.4
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 5.9e-198 694.5 471 76.2
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.7e-197 693.0 503 72.2
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 2.3e-197 692.6 515 71.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.8e-197 691.8 506 71.5
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 8.6e-197 690.6 506 71.5
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 9.5e-196 687.2 503 72.2
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.6e-195 686.4 515 69.9
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 2.1e-195 686.0 506 70.9
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 2.8e-195 685.6 515 70.1
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 2.8e-195 685.6 505 71.1
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 6.1e-195 684.5 502 72.3
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 3.0e-194 682.2 506 70.2
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 2.6e-193 679.1 465 75.7
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.9e-192 675.6 509 69.7
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 2.9e-192 675.6 515 69.3
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 4.9e-192 674.9 505 69.9
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.1e-191 673.7 500 70.8
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 3.2e-191 672.2 502 69.5
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 5.4e-191 671.4 503 70.2
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 7.0e-191 671.0 499 69.9
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 7.0e-191 671.0 509 70.5
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 3.5e-190 668.7 471 74.3
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 5.9e-190 667.9 505 70.3
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.0e-189 667.2 518 68.3
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.0e-189 667.2 471 71.1
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.7e-189 666.4 505 68.3
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.1e-188 663.7 503 71.0
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 8.0e-187 657.5 498 69.9
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 3.1e-186 655.6 482 72.0
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.2e-185 653.7 515 70.1
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 8.3e-184 647.5 501 67.5
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 8.3e-184 647.5 415 78.6
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 8.3e-184 647.5 498 67.9
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.9e-183 646.4 493 70.4
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.4e-183 646.0 496 69.2
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.3e-181 640.2 501 67.5
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.5e-180 636.7 491 67.2
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 3.3e-180 635.6 518 66.6
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 4.3e-180 635.2 465 70.8
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.6e-180 634.8 477 69.6
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 5.6e-180 634.8 470 69.8
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 7.3e-180 634.4 464 71.6
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 7.3e-180 634.4 498 66.5
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 1.2e-179 633.6 497 66.2
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 5.2e-178 628.2 511 65.6
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 5.2e-178 628.2 477 69.6
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 8.9e-178 627.5 442 74.4
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.2e-177 627.1 471 67.9
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.2e-177 627.1 477 68.8
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 4.4e-177 625.2 464 69.0
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 7.5e-177 624.4 509 66.2
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 9.8e-177 624.0 508 64.6
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.2e-176 622.9 477 68.6
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 8.3e-176 620.9 504 69.2
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.1e-175 620.5 508 64.8
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 1.9e-175 619.8 464 69.0
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 3.2e-175 619.0 450 70.9
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 4.1e-175 618.6 468 69.0
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 2.7e-174 615.9 499 66.1
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 4.6e-174 615.1 534 63.1
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 6.0e-174 614.8 467 68.3
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.7e-173 613.2 400 78.0
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 3.0e-173 612.5 446 70.6
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.1e-172 610.5 508 63.8
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.9e-172 609.8 509 64.4
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.3e-172 608.6 443 70.4
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 5.6e-172 608.2 512 64.1
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 7.3e-172 607.8 505 64.2
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 1.6e-171 606.7 510 63.5
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.1e-171 606.3 440 70.5
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 4.7e-171 605.1 499 63.7
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 7.1e-167 591.3 441 68.0
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 9.2e-167 590.9 501 64.9
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.2e-166 590.5 350 83.1
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 3.0e-165 585.9 480 62.7
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 6.6e-165 584.7 508 63.6
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.1e-164 583.9 552 60.3
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 3.2e-159 565.8 482 63.5
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 6.6e-157 558.1 449 65.3
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 8.7e-157 557.8 511 59.9
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 1.9e-156 556.6 509 59.9
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 8.1e-155 551.2 442 66.5
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 1.4e-154 550.4 539 55.8
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.6e-153 546.2 391 73.4
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 5.4e-151 538.5 503 60.4
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.2e-150 537.3 432 66.2
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 4.6e-142 508.8 390 64.4
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.0e-141 506.1 468 57.3
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.4e-138 497.3 441 60.8
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 6.9e-138 495.0 493 55.2
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 2.6e-137 493.0 357 66.4
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.9e-136 489.6 484 55.6
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 3.3e-132 476.1 309 74.4
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 5.7e-132 475.3 380 65.8
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 2.0e-121 440.3 366 60.1
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 7.7e-121 438.3 340 64.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 6.1e-118 428.7 273 78.8
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.6e-113 413.3 401 56.6
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 3.9e-109 399.4 407 52.6
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.5e-108 397.5 441 51.5
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 3.1e-106 389.8 430 49.1
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 1.6e-105 387.5 441 48.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.6e-102 377.5 390 52.8
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 3.0e-101 373.2 351 59.5
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.4e-98 364.4 239 74.9
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.9e-95 354.0 381 48.8
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 7.2e-87 325.5 471 43.3
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.3e-79 299.7 337 52.2
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 6.4e-75 285.8 265 59.6
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 4.7e-70 269.6 359 44.6
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 4.6e-65 253.1 491 35.6
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 6.2e-62 242.7 299 48.5
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 2.6e-52 210.7 437 32.0
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.6e-36 157.5 130 66.2
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 1.9e-34 151.4 107 72.9
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 7.1e-34 149.4 117 65.8
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 2.5e-31 141.0 194 45.9
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.3e-24 117.9 177 41.2
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 3.0e-24 117.5 100 60.0
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.9e-19 100.9 203 35.5
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.9e-18 98.2 160 45.6
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-16 92.0 89 51.7
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 2.3e-16 91.3 134 48.5
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 7.4e-15 86.3 67 59.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.3e-14 85.5 95 47.4
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.3e-11 75.5 160 42.5
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.1e-10 72.4 68 58.8
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.9e-10 71.6 54 63.0
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 4.6e-09 67.0 267 26.6


User provided reference genes

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