Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 0.0e+00 1428.3 958 100.0
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.6e-234 814.7 927 65.7
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.7e-233 813.5 967 66.4
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 3.1e-227 792.7 997 67.9
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.1e-224 784.3 798 69.4
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 6.6e-222 775.0 962 67.7
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 6.9e-219 765.0 1010 61.0
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 4.5e-218 762.3 981 60.9
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 1.2e-215 754.2 973 64.5
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 2.7e-215 753.1 790 73.3
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.1e-208 731.1 1021 63.7
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.3e-206 724.2 968 63.2
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 5.1e-206 722.2 842 65.2
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.8e-204 716.5 1008 61.4
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 1.0e-201 708.0 976 59.2
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 3.8e-201 706.1 986 55.8
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 9.3e-200 701.4 862 53.6
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.6e-199 700.7 932 62.8
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 3.5e-199 699.5 945 59.0
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 4.3e-197 692.6 891 64.5
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 8.2e-196 688.3 913 57.5
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.5e-194 684.1 992 59.0
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 3.6e-191 672.9 894 62.9
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 6.1e-191 672.2 883 60.4
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 7.9e-191 671.8 901 57.5
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.3e-190 670.2 999 58.1
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.0e-189 667.2 1052 55.0
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 2.0e-189 667.2 994 58.7
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.5e-189 666.8 980 60.6
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 8.2e-188 661.8 835 60.2
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 5.3e-187 659.1 926 61.7
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 6.9e-187 658.7 951 56.0
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.0e-185 654.8 979 56.8
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 6.5e-185 652.1 915 59.6
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.4e-182 644.4 799 60.3
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 2.3e-182 643.7 791 65.6
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 6.7e-182 642.1 1026 54.1
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 2.4e-179 633.6 989 55.2
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 1.5e-178 630.9 904 63.4
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 1.5e-178 630.9 792 66.3
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 2.0e-178 630.6 792 63.8
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 5.0e-177 625.9 1054 48.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.9e-176 624.0 906 56.0
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.9e-176 624.0 982 55.5
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.5e-176 623.6 933 54.0
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 5.5e-176 622.5 1023 52.1
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 7.2e-176 622.1 917 61.8
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.5e-173 614.4 970 53.2
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.5e-173 614.4 793 61.2
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 7.4e-173 612.1 809 62.4
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 3.7e-172 609.8 971 57.9
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 1.1e-171 608.2 901 57.2
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.4e-171 607.8 1093 50.1
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.4e-171 607.8 806 59.3
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 3.1e-171 606.7 806 59.6
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.0e-170 604.0 978 56.4
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 4.2e-168 596.3 993 56.5
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 9.4e-168 595.1 999 46.7
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 1.2e-167 594.7 792 60.0
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 6.7e-166 589.0 743 60.4
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 2.0e-165 587.4 989 54.5
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.6e-165 587.0 791 61.3
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 4.4e-165 586.3 916 55.3
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 7.0e-163 578.9 1044 54.7
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 7.0e-163 578.9 800 54.0
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 9.1e-163 578.6 928 54.4
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 2.7e-162 577.0 791 58.9
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 3.5e-162 576.6 789 58.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 4.5e-162 576.2 761 60.8
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 1.0e-161 575.1 925 57.1
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.3e-161 574.7 1066 53.9
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 1.1e-160 571.6 778 56.3
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 5.5e-160 569.3 780 61.5
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 2.1e-159 567.4 977 53.3
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 2.3e-158 563.9 900 55.9
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.2e-157 561.6 984 48.7
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.6e-157 560.5 979 54.5
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 5.4e-155 552.7 795 58.5
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 2.9e-153 547.0 814 59.0
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 3.3e-152 543.5 796 58.5
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 2.1e-151 540.8 897 55.3
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 3.6e-151 540.0 893 53.5
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 4.9e-148 529.6 812 56.9
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 1.2e-146 525.0 800 53.2
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 6.6e-145 519.2 794 55.5
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.9e-144 517.7 921 52.4
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 2.5e-144 517.3 910 50.7
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 3.3e-144 516.9 983 53.0
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.2e-143 515.0 917 53.1
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 1.8e-142 511.1 898 46.4
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 6.8e-142 509.2 843 58.2
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.2e-141 508.4 768 60.4
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 2.6e-141 507.3 980 49.0
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 9.2e-139 498.8 986 49.4
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.0e-138 497.7 972 50.6
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 2.3e-137 494.2 968 50.6
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.8e-135 487.3 979 49.3
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 6.2e-135 486.1 984 45.7
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.1e-134 485.3 973 48.7
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 2.3e-134 484.2 997 50.8
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 4.0e-134 483.4 997 51.4
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.5e-133 481.5 977 51.3
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.5e-133 481.5 839 46.0
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 7.5e-133 479.2 979 48.9
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.3e-132 478.4 807 53.2
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 8.6e-129 465.7 978 48.5
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 8.6e-129 465.7 978 48.5
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 4.3e-128 463.4 800 56.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.2e-127 461.8 792 55.1
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-126 458.4 900 50.9
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 7.5e-125 452.6 764 49.0
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-124 451.8 1005 47.3
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.2e-124 451.1 886 49.0
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.5e-120 437.6 982 46.9
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 9.5e-120 435.6 983 47.4
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 9.6e-112 409.1 803 50.7
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.3e-108 398.7 834 46.0
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 2.6e-101 374.4 857 50.4
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.3e-100 372.1 931 47.3
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.6e-98 363.6 293 70.3
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 1.2e-93 349.0 730 53.6
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.0e-93 348.2 843 48.4
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 4.3e-88 330.5 338 62.7
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 1.1e-78 299.3 598 54.0
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.2e-75 287.3 269 62.1
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 9.4e-75 286.2 311 58.2
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 9.4e-67 259.6 361 49.0
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.9e-65 254.2 851 39.6
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.5e-59 235.7 218 64.7
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.2e-58 232.6 521 42.0
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.6e-58 231.1 241 59.3
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.1e-56 226.1 403 43.9
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-46 192.6 281 52.7
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 9.4e-43 179.9 161 62.7
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 4.1e-38 164.5 132 64.4
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.6e-26 125.9 71 87.3
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 9.8e-24 116.7 73 79.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 5.4e-22 110.9 143 43.4
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 7.0e-22 110.5 171 43.3
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 1.2e-18 99.8 174 40.8
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 1.5e-16 92.8 141 41.1
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.3e-15 89.7 92 45.7
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 2.2e-15 89.0 189 36.0
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.9e-15 87.8 92 53.3
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.0e-12 80.1 401 27.2
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 1.5e-11 76.3 115 36.5
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 5.6e-11 74.3 146 34.2
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.1e-09 68.6 87 50.6
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.7e-07 62.8 92 46.7
PSO339G4348 Papaver somniferum HOM05D031134 ORTHO05D302392 1.1e-06 60.1 182 29.7
PSO339G1828 Papaver somniferum HOM05D031134 ORTHO05D301998 1.4e-06 59.7 182 29.1
PSO339G2267 Papaver somniferum HOM05D004266 ORTHO05D005151 1.4e-06 59.7 94 29.8
PSO339G5784 Papaver somniferum HOM05D004266 ORTHO05D005151 1.4e-06 59.7 94 29.8
PSO339G5906 Papaver somniferum HOM05D031134 ORTHO05D302295 1.4e-06 59.7 182 29.1


User provided reference genes

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