Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 0.0e+00 1386.3 670 100.0
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 0.0e+00 1089.7 634 83.9
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 9.2e-312 1073.2 635 82.5
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 6.9e-311 1070.1 631 82.9
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 3.0e-306 1054.7 635 80.9
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 3.0e-306 1054.7 637 81.2
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.1e-303 1046.2 631 81.0
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 2.0e-302 1042.0 635 79.7
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 7.2e-300 1033.5 631 80.5
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 2.1e-299 1031.9 635 79.5
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 2.8e-299 1031.6 634 80.3
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 2.3e-298 1028.5 635 79.2
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 2.3e-298 1028.5 637 79.3
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 4.0e-298 1027.7 635 80.2
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 1.2e-297 1026.2 635 78.6
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 9.8e-297 1023.1 638 79.5
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.1e-295 1019.6 639 77.8
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 2.0e-294 1015.4 638 78.1
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 4.5e-294 1014.2 635 77.3
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 1.0e-293 1013.1 639 77.8
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 1.7e-293 1012.3 682 74.2
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 6.6e-293 1010.4 635 78.0
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 8.6e-293 1010.0 636 78.0
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.1e-292 1009.6 635 77.5
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 1.5e-292 1009.2 638 77.7
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 1.9e-292 1008.8 635 78.3
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 1.9e-292 1008.8 636 78.3
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 3.3e-292 1008.1 632 77.7
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 4.3e-292 1007.7 636 78.1
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 9.5e-292 1006.5 635 77.5
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 1.2e-291 1006.1 638 77.4
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.6e-291 1005.7 635 76.9
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 1.6e-291 1005.7 635 76.9
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 3.6e-291 1004.6 632 77.7
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 1.8e-290 1002.3 632 77.5
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.8e-290 1002.3 635 77.3
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.8e-290 1002.3 654 75.8
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 8.9e-290 1000.0 635 77.2
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 8.9e-290 1000.0 635 77.2
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 1.5e-289 999.2 633 76.9
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 3.4e-289 998.0 636 77.2
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 9.8e-289 996.5 635 76.9
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 3.7e-288 994.6 635 76.4
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.4e-287 991.9 630 77.3
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 4.1e-287 991.1 644 74.8
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 5.4e-287 990.7 631 75.9
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 7.0e-287 990.3 634 76.5
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 9.2e-287 989.9 631 77.7
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 3.5e-286 988.0 632 76.4
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 3.9e-285 984.6 635 75.3
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 6.6e-285 983.8 632 75.8
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 6.6e-285 983.8 631 77.2
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 1.1e-284 983.0 631 77.5
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 1.5e-284 982.6 688 72.2
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 2.8e-283 978.4 632 75.8
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 4.7e-283 977.6 631 75.8
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 1.1e-282 976.5 635 75.4
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.8e-282 975.7 632 75.3
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 4.0e-282 974.5 631 75.1
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 6.8e-282 973.8 637 74.9
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 8.9e-282 973.4 641 73.8
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.5e-281 972.6 687 70.9
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 2.0e-281 972.2 632 75.2
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.0e-281 972.2 631 75.3
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 3.4e-281 971.5 631 74.8
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 3.4e-281 971.5 631 74.8
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 7.5e-281 970.3 631 74.8
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 1.7e-280 969.1 631 75.0
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.7e-280 969.1 631 74.5
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.2e-280 968.8 631 75.1
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 6.4e-280 967.2 631 74.5
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.4e-279 965.3 631 74.2
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 4.1e-279 964.5 635 75.3
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 5.4e-279 964.1 631 74.6
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 1.2e-278 963.0 685 70.4
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.7e-277 959.1 631 73.9
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.7e-277 959.1 633 74.6
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 2.3e-277 958.7 636 74.1
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 5.1e-277 957.6 632 74.5
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 1.1e-276 956.4 658 71.9
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.9e-276 955.7 633 73.9
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 3.4e-273 944.9 661 72.0
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 1.6e-270 936.0 638 71.9
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 1.1e-268 929.9 646 71.1
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 1.5e-268 929.5 647 72.6
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 7.3e-268 927.2 646 72.3
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 7.3e-268 927.2 640 73.4
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 2.1e-267 925.6 664 69.6
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 4.7e-267 924.5 686 69.1
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 1.8e-266 922.5 553 82.8
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 2.0e-265 919.1 593 75.4
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 1.7e-264 916.0 635 72.3
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 2.2e-264 915.6 593 75.4
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 6.4e-264 914.1 579 77.9
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 2.4e-263 912.1 640 69.4
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 2.1e-262 909.1 641 70.7
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 3.0e-261 905.2 638 69.0
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.9e-261 904.8 665 68.3
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 2.4e-258 895.6 652 69.6
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 3.4e-257 891.7 648 67.4
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 1.7e-256 889.4 655 68.2
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 4.2e-255 884.8 547 79.0
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 6.0e-254 880.9 646 66.9
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 6.6e-253 877.5 648 67.9
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.5e-252 876.3 821 58.6
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 1.2e-249 866.7 631 69.1
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 1.5e-249 866.3 561 75.8
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 5.8e-249 864.4 649 68.9
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 2.9e-248 862.1 639 67.8
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 1.1e-247 860.1 635 67.2
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 7.1e-247 857.4 512 80.9
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 3.3e-244 848.6 497 84.1
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 5.6e-244 847.8 647 65.1
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.8e-243 845.5 648 64.8
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 1.4e-239 833.2 531 76.5
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 2.3e-237 825.9 595 71.6
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 1.5e-236 823.2 645 64.2
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 8.5e-224 780.8 631 62.1
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 5.5e-215 751.5 633 60.0
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 2.2e-208 729.6 648 58.6
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 3.0e-181 639.4 644 52.6
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 1.8e-173 613.6 686 48.0
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 3.1e-173 612.8 416 72.4
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.0e-172 610.1 625 54.6
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 2.0e-172 610.1 540 58.3
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 5.4e-170 602.1 639 51.5
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.3e-168 597.4 615 53.2
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 6.6e-168 595.1 364 81.0
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 8.6e-168 594.7 454 67.6
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 3.1e-165 586.3 630 49.8
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 1.2e-153 547.7 364 74.7
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 3.4e-148 529.6 619 47.5
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 1.9e-146 523.9 347 73.5
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 7.1e-138 495.4 303 79.2
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 5.3e-133 479.2 550 50.4
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 6.9e-133 478.8 321 74.1
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 4.8e-126 456.1 369 65.6
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.9e-111 407.5 445 53.5
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 5.3e-109 399.4 627 40.0
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 1.0e-107 395.2 386 56.7
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 3.8e-91 340.1 631 36.3
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.9e-90 337.8 222 74.3
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 1.0e-75 288.9 348 45.4
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 1.3e-75 288.5 190 74.2
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 7.2e-74 282.7 582 34.2
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 2.6e-71 274.2 307 51.5
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 4.4e-71 273.5 258 53.9
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 6.3e-70 269.6 530 34.0
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 6.6e-67 259.6 201 63.2
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 7.3e-66 256.1 646 29.7
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 6.8e-56 223.0 516 35.1
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 4.3e-50 203.8 185 57.8
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 6.8e-48 196.4 139 75.5
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 9.8e-47 192.6 216 49.5
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-40 172.6 146 65.8
Oeu057141.1 Olea europaea HOM05D003985 ORTHO05D005253 9.6e-34 149.4 112 67.9
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 6.9e-32 143.3 108 65.7
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.4e-24 119.0 64 85.9
Cc01_g20960 Coffea canephora HOM05D003985 ORTHO05D044681 4.5e-23 114.0 59 79.7
Lalb_Chr08g0243671 Lupinus albus HOM05D003985 ORTHO05D044681 5.8e-23 113.6 59 81.4
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 3.2e-21 107.8 69 71.0
Rhsim07G0173700 Rhododendron simsii HOM05D003985 ORTHO05D023785 7.1e-21 106.7 144 45.8
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 2.1e-20 105.1 134 45.5
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 1.6e-17 95.5 65 72.3
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.8e-17 94.7 155 38.1
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.4e-15 87.8 50 84.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 1.7e-14 85.5 79 54.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 8.4e-14 83.2 50 76.0
TPR.G30960 Trifolium pratense HOM05D003985 ORTHO05D005253 3.2e-13 81.3 78 53.8
TAR636G2548 Trochodendron aralioides HOM05D003985 ORTHO05D031326 4.2e-13 80.9 50 76.0
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 1.3e-11 75.9 45 86.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 5.1e-11 73.9 39 84.6
SMO334G0030 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 5.6e-10 70.5 48 62.5
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 7.4e-10 70.1 43 74.4
Glyma.15G097800 Glycine max HOM05D000639 ORTHO05D006731 2.4e-08 65.1 246 25.6
AL7G31410 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 5.3e-08 63.9 42 69.0
Glyma.09G285500 Glycine max HOM05D000639 ORTHO05D006731 2.6e-07 61.6 231 25.1
AL6G47194 Arabidopsis lyrata HOM05D003985 ORTHO05D031326 3.4e-07 61.2 37 73.0
Phvul.003G001000 Phaseolus vulgaris HOM05D000639 ORTHO05D006731 1.3e-06 59.3 231 25.1
VMungo1215G0799 Vigna mungo HOM05D000639 ORTHO05D006731 1.3e-06 59.3 231 25.1
SMO118G0255 Selaginella moellendorffii HOM05D000639 ORTHO05D006731 2.2e-06 58.5 237 24.1
CBR_g21834 Chara braunii HOM05D000639 ORTHO05D006731 3.8e-06 57.8 127 34.6
Sc13g0003460 Simmondsia chinensis HOM05D000639 ORTHO05D004019 6.5e-06 57.0 239 27.6


User provided reference genes

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