Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024741 Camellia sinensis var. sinensis HOM05D005272 ORTHO05D006890 2.4e-119 432.2 214 100.0
CSS0036481 Camellia sinensis var. sinensis HOM05D005272 ORTHO05D006890 1.6e-107 392.9 214 92.5
Dinv05203 Davidia involucrata HOM05D005272 ORTHO05D006890 9.7e-65 250.8 134 88.1
Hma1.2p1_1114F.1_g258750 Hydrangea macrophylla HOM05D005272 ORTHO05D006890 1.7e-64 250.0 134 87.3
Rhsim04G0168600 Rhododendron simsii HOM05D005272 ORTHO05D006890 3.7e-64 248.8 149 82.6
GSVIVG01018859001 Vitis vinifera HOM05D005272 ORTHO05D006890 9.1e-63 244.2 136 83.8
Rhsim13G0235800 Rhododendron simsii HOM05D005272 ORTHO05D006890 1.6e-62 243.4 145 82.8
Peaxi162Scf01079g00214 Petunia axillaris HOM05D005272 ORTHO05D006890 3.5e-62 242.3 134 82.8
Gohir.A10G096700 Gossypium hirsutum HOM05D005272 ORTHO05D006890 4.5e-62 241.9 140 82.1
CiPaw.07G053400 Carya illinoinensis HOM05D005272 ORTHO05D006890 5.9e-62 241.5 138 84.8
Cc07_g10140 Coffea canephora HOM05D005272 ORTHO05D006890 5.9e-62 241.5 134 84.3
Solyc02g062430.3 Solanum lycopersicum HOM05D005272 ORTHO05D006890 7.7e-62 241.1 134 82.8
Sopen02g013430 Solanum pennellii HOM05D005272 ORTHO05D006890 7.7e-62 241.1 134 82.8
Sc03g0003260 Simmondsia chinensis HOM05D005272 ORTHO05D006890 1.0e-61 240.7 139 80.6
Gohir.D10G091400 Gossypium hirsutum HOM05D005272 ORTHO05D006890 1.7e-61 240.0 140 82.1
Aqoxy5G01527 Aquilegia oxysepala HOM05D005272 ORTHO05D006890 2.2e-61 239.6 137 84.7
PGSC0003DMG400015514 Solanum tuberosum HOM05D005272 ORTHO05D006890 2.2e-61 239.6 134 82.8
Duzib187G1472 Durio zibethinus HOM05D005272 ORTHO05D006890 2.9e-61 239.2 134 83.6
Atru.chr3.734 Acer truncatum HOM05D005272 ORTHO05D006890 3.8e-61 238.8 139 79.9
MELO3C016408.2 Cucumis melo HOM05D005272 ORTHO05D006890 5.0e-61 238.4 134 84.3
CsaV3_4G005410 Cucumis sativus L. HOM05D005272 ORTHO05D006890 5.0e-61 238.4 134 83.6
TAR381G0099 Trochodendron aralioides HOM05D005272 ORTHO05D006890 5.0e-61 238.4 136 83.1
TWI60G1562 Tripterygium wilfordii HOM05D005272 ORTHO05D006890 6.5e-61 238.0 136 82.4
Haze_03835 Corylus avellana HOM05D005272 ORTHO05D006890 8.5e-61 237.7 137 81.8
CAN.G408.3 Capsicum annuum HOM05D005272 ORTHO05D006890 1.1e-60 237.3 134 82.1
Thecc.01G026600 Theobroma cacao HOM05D005272 ORTHO05D006890 1.1e-60 237.3 137 81.0
vmacro01069 Vaccinium macrocarpon HOM05D005272 ORTHO05D006890 1.5e-60 236.9 169 72.8
ClCG07G008770 Citrullus lanatus HOM05D005272 ORTHO05D006890 1.9e-60 236.5 134 83.6
Potri.007G018600 Populus trichocarpa HOM05D005272 ORTHO05D006890 3.2e-60 235.7 137 81.8
Cpa.g.sc6.186 Carica papaya HOM05D005272 ORTHO05D006890 4.2e-60 235.3 137 81.0
ECA238G0324 Erigeron canadensis HOM05D005272 ORTHO05D006890 5.5e-60 235.0 137 82.5
AUR62007628 Chenopodium quinoa HOM05D005272 ORTHO05D006890 7.2e-60 234.6 139 79.1
Nn1g05787 Nelumbo nucifera HOM05D005272 ORTHO05D006890 7.2e-60 234.6 137 79.6
Ciclev10025317m.g Citrus clementina HOM05D005272 ORTHO05D006890 9.4e-60 234.2 138 79.7
Manes.01G140700 Manihot esculenta HOM05D005272 ORTHO05D006890 1.2e-59 233.8 139 79.1
Sabra07G0015700 Salix brachista HOM05D005272 ORTHO05D006890 1.2e-59 233.8 137 81.8
QL06p034856 Quercus lobata HOM05D005272 ORTHO05D006890 2.1e-59 233.0 139 80.6
QL10p007431 Quercus lobata HOM05D005272 ORTHO05D006890 2.1e-59 233.0 139 80.6
VMungo1215G0635 Vigna mungo HOM05D005272 ORTHO05D006890 2.1e-59 233.0 137 79.6
QL06p034836 Quercus lobata HOM05D005272 ORTHO05D006890 2.7e-59 232.6 137 80.3
QL10p007416 Quercus lobata HOM05D005272 ORTHO05D006890 2.7e-59 232.6 137 80.3
RcHm_v2.0_Chr2g0100131 Rosa chinensis HOM05D005272 ORTHO05D006890 2.7e-59 232.6 134 82.1
Lsat_1_v5_gn_2_78121 Lactuca sativa HOM05D005272 ORTHO05D006890 4.7e-59 231.9 137 78.8
Nitab4.5_0000136g0150 Nicotiana tabacum HOM05D005272 ORTHO05D006890 4.7e-59 231.9 134 82.8
Hund16459 Selenicereus undatus HOM05D005272 ORTHO05D006890 4.7e-59 231.9 139 77.0
Phvul.005G099900 Phaseolus vulgaris HOM05D005272 ORTHO05D006890 8.0e-59 231.1 137 78.1
Sed0020582 Sechium edule HOM05D005272 ORTHO05D006890 8.0e-59 231.1 136 80.9
MBI04_g26283_MAGBIO Magnolia biondii HOM05D005272 ORTHO05D006890 1.0e-58 230.7 133 81.2
MSTRG.23263 Avicennia marina HOM05D005272 ORTHO05D006890 1.8e-58 229.9 137 79.6
CANSAT01G2901 Cannabis sativa HOM05D005272 ORTHO05D006890 1.8e-58 229.9 140 77.9
DCAR_017317 Daucus carota HOM05D005272 ORTHO05D006890 1.8e-58 229.9 133 80.5
Migut.H02506 Erythranthe guttata HOM05D005272 ORTHO05D006890 2.3e-58 229.6 138 79.0
Eucgr.I02388 Eucalyptus grandis HOM05D005272 ORTHO05D006890 3.0e-58 229.2 132 81.1
Eucgr.I02389 Eucalyptus grandis HOM05D005272 ORTHO05D006890 4.0e-58 228.8 136 78.7
PSO170G5749 Papaver somniferum HOM05D005272 ORTHO05D006890 4.0e-58 228.8 137 79.6
Prupe.7G162700 Prunus persica HOM05D005272 ORTHO05D006890 4.0e-58 228.8 140 78.6
arahy.Tifrunner.gnm1.ann1.4MV4X2 Arachis hypogaea HOM05D005272 ORTHO05D006890 5.2e-58 228.4 133 80.5
arahy.Tifrunner.gnm1.ann1.CVF5QE Arachis hypogaea HOM05D005272 ORTHO05D006890 5.2e-58 228.4 133 80.5
FvH4_1g12310 Fragaria vesca HOM05D005272 ORTHO05D006890 5.2e-58 228.4 134 79.9
FAN19G2225 Fragaria x ananassa HOM05D005272 ORTHO05D006890 5.2e-58 228.4 134 79.9
FAN23G1388 Fragaria x ananassa HOM05D005272 ORTHO05D006890 5.2e-58 228.4 134 79.9
FAN28G0729 Fragaria x ananassa HOM05D005272 ORTHO05D006890 5.2e-58 228.4 134 79.9
PGR119G2315 Punica granatum HOM05D005272 ORTHO05D006890 6.8e-58 228.0 134 81.3
FAN26G2090 Fragaria x ananassa HOM05D005272 ORTHO05D006890 8.8e-58 227.6 134 79.9
Nitab4.5_0009648g0010 Nicotiana tabacum HOM05D005272 ORTHO05D006890 8.8e-58 227.6 134 81.3
Lj2g0009312 Lotus japonicus HOM05D005272 ORTHO05D006890 1.5e-57 226.9 140 77.9
ATR0665G208 Amborella trichopoda HOM05D005272 ORTHO05D006890 2.0e-57 226.5 134 79.1
Ca_24889_v3 Cicer arietinum L. HOM05D005272 ORTHO05D006890 2.0e-57 226.5 140 75.0
MD15G1251700 Malus domestica HOM05D005272 ORTHO05D006890 2.6e-57 226.1 136 80.1
Glyma.01G169800 Glycine max HOM05D005272 ORTHO05D006890 5.7e-57 224.9 137 77.4
PGR119G0710 Punica granatum HOM05D005272 ORTHO05D006890 7.5e-57 224.6 134 79.9
TPR.G2387 Trifolium pratense HOM05D005272 ORTHO05D006890 7.5e-57 224.6 140 73.6
CDE07G0649 Ceratophyllum demersum HOM05D005272 ORTHO05D006890 4.8e-56 221.9 136 76.5
Lalb_Chr09g0322041 Lupinus albus HOM05D005272 ORTHO05D006890 8.3e-56 221.1 137 75.9
SalBow8G2913 Salvia bowleyana HOM05D005272 ORTHO05D006890 1.1e-55 220.7 137 76.6
Medtr5g021240 Medicago truncatula HOM05D005272 ORTHO05D006890 1.8e-55 219.9 140 72.9
EL10As8g23880 Beta vulgaris HOM05D005272 ORTHO05D006890 7.0e-55 218.0 175 62.9
THA.LOC104807474 Tarenaya hassleriana HOM05D005272 ORTHO05D006890 7.0e-55 218.0 137 74.5
Psat0s3355g0040 Pisum sativum HOM05D005272 ORTHO05D006890 9.1e-55 217.6 130 76.9
Zm00001eb302200 Zea mays HOM05D005272 ORTHO05D006890 1.6e-54 216.9 137 75.9
Os07g0187200 Oryza sativa ssp. japonica HOM05D005272 ORTHO05D006890 3.5e-54 215.7 137 75.9
Phvul.002G112400 Phaseolus vulgaris HOM05D005272 ORTHO05D006890 5.9e-54 214.9 133 75.2
CARHR244730 Cardamine hirsuta HOM05D005272 ORTHO05D006890 7.7e-54 214.5 134 73.1
Aa31LG6G13200 Aethionema arabicum HOM05D005272 ORTHO05D006890 2.2e-53 213.0 137 73.7
AT4G36400 Arabidopsis thaliana HOM05D005272 ORTHO05D006890 3.8e-53 212.2 137 73.7
AL7G14690 Arabidopsis lyrata HOM05D005272 ORTHO05D006890 8.5e-53 211.1 137 73.0
Carub.0007s0391 Capsella rubella HOM05D005272 ORTHO05D006890 1.5e-52 210.3 137 72.3
Thhalv10024815m.g Eutrema salsugineum HOM05D005272 ORTHO05D006890 1.5e-52 210.3 136 73.5
Sp7g34060 Schrenkiella parvula HOM05D005272 ORTHO05D006890 2.1e-51 206.5 139 70.5
Lj4A210T35 Lonicera japonica HOM05D005272 ORTHO05D006890 6.1e-51 204.9 114 85.1
SEGI_12840 Sequoiadendron giganteum HOM05D005272 ORTHO05D006890 8.0e-51 204.5 132 72.0
BraA03t15492Z Brassica rapa HOM05D005272 ORTHO05D006890 8.8e-50 201.1 136 71.3
Gorai.011G100400 Gossypium raimondii HOM05D005272 ORTHO05D006890 4.4e-49 198.7 112 83.0
BolC7t46592H Brassica oleracea HOM05D005272 ORTHO05D006890 1.3e-48 197.2 142 68.3
AagrBONN_evm.TU.Sc2ySwM_344.3428 Anthoceros agrestis HOM05D005272 ORTHO05D006890 2.8e-48 196.1 140 65.0
COL.COLO4_21995 Corchorus olitorius HOM05D005272 ORTHO05D002654 6.3e-48 194.9 110 81.8
Ah.03g141540 Amaranthus hybridus HOM05D005272 ORTHO05D006890 1.1e-47 194.1 112 79.5
HanXRQChr07g0190391 Helianthus annuus HOM05D005272 ORTHO05D006890 5.4e-47 191.8 109 81.7
AUR62004113 Chenopodium quinoa HOM05D005272 ORTHO05D006890 1.2e-46 190.7 109 79.8
Mapoly0113s0062 Marchantia polymorpha HOM05D005272 ORTHO05D006890 5.9e-46 188.3 131 67.2
Pp3c26_11820 Physcomitrium patens HOM05D005272 ORTHO05D006890 4.3e-44 182.2 131 63.4
SMO364G0024 Selaginella moellendorffii HOM05D005272 ORTHO05D006890 1.0e-42 177.6 128 66.4
CBR_g3549 Chara braunii HOM05D005272 ORTHO05D006890 4.4e-41 172.2 131 60.3
Cre08.g370550 Chlamydomonas reinhardtii HOM05D005272 ORTHO05D006890 1.1e-39 167.5 184 48.9
A03p64220 Brassica napus HOM05D005272 ORTHO05D006890 1.0e-37 161.0 110 69.1
C07p61680 Brassica napus HOM05D005272 ORTHO05D006890 1.0e-37 161.0 110 69.1
MCO05G403 Micromonas commoda HOM05D005272 ORTHO05D006890 2.8e-35 152.9 155 51.0
PRCOL_00001074 Prasinoderma coloniale HOM05D005272 ORTHO05D006890 1.8e-34 150.2 138 52.2
Cfa023942 Carpinus fangiana HOM05D005272 ORTHO05D006890 3.6e-27 125.9 138 45.7
Glyma.11G073500 Glycine max HOM05D005272 ORTHO05D006890 8.9e-26 121.3 76 76.3
unitig_899.g14635 Utricularia gibba HOM05D005272 ORTHO05D006890 4.9e-24 115.5 100 61.0
Rhsim09G0214700 Rhododendron simsii HOM05D005272 ORTHO05D006890 7.3e-20 101.7 50 92.0
SMO364G0343 Selaginella moellendorffii HOM05D005272 ORTHO05D006890 1.9e-15 87.0 65 61.5
arahy.Tifrunner.gnm1.ann1.J41GPI Arachis hypogaea HOM05D030158 ORTHO05D006890 9.9e-09 64.7 35 82.9
Mapoly0056s0055 Marchantia polymorpha HOM05D004834 ORTHO05D006247 1.7e-08 63.9 163 25.8
unitig_899.g14634 Utricularia gibba HOM05D001473 ORTHO05D003900 4.9e-08 62.4 61 55.7
MBI11_g39498_MAGBIO Magnolia biondii HOM05D004834 ORTHO05D006247 6.4e-08 62.0 118 28.8
Hund10783 Selenicereus undatus HOM05D004834 ORTHO05D006247 1.4e-07 60.8 120 29.2
Cc06_g07030 Coffea canephora HOM05D004834 ORTHO05D006247 3.2e-07 59.7 120 30.0
GSVIVG01022507001 Vitis vinifera HOM05D004834 ORTHO05D006247 3.2e-07 59.7 119 28.6
ECA238G0502 Erigeron canadensis HOM05D004834 ORTHO05D006247 4.2e-07 59.3 120 30.0
CSS0029343 Camellia sinensis var. sinensis HOM05D004834 ORTHO05D006247 5.4e-07 58.9 120 30.0
Cfa026190 Carpinus fangiana HOM05D004834 ORTHO05D006247 5.4e-07 58.9 118 25.4
Lsat_1_v5_gn_2_102000 Lactuca sativa HOM05D004834 ORTHO05D006247 5.4e-07 58.9 119 28.6
Potri.016G064800 Populus trichocarpa HOM05D004834 ORTHO05D006247 5.4e-07 58.9 120 30.8
Lalb_Chr20g0111191 Lupinus albus HOM05D004834 ORTHO05D006247 7.1e-07 58.5 120 30.0
QL07p026067 Quercus lobata HOM05D004834 ORTHO05D006247 7.1e-07 58.5 119 27.7
Migut.J00722 Erythranthe guttata HOM05D004834 ORTHO05D006247 9.3e-07 58.2 122 27.9
Phvul.001G199000 Phaseolus vulgaris HOM05D004834 ORTHO05D006247 9.3e-07 58.2 120 30.0
Ah.02g115150 Amaranthus hybridus HOM05D004834 ORTHO05D006247 1.2e-06 57.8 152 27.6
Ca_09087_v3 Cicer arietinum L. HOM05D004834 ORTHO05D006247 1.2e-06 57.8 120 29.2
Manes.09G041400 Manihot esculenta HOM05D004834 ORTHO05D006247 1.2e-06 57.8 119 28.6
Medtr7g107050 Medicago truncatula HOM05D004834 ORTHO05D006247 1.2e-06 57.8 120 29.2
Pp3c24_4090 Physcomitrium patens HOM05D004834 ORTHO05D006247 1.2e-06 57.8 121 27.3
VMungo1383G2386 Vigna mungo HOM05D004834 ORTHO05D006247 1.2e-06 57.8 120 30.0
AUR62036303 Chenopodium quinoa HOM05D004834 ORTHO05D006247 1.6e-06 57.4 120 28.3
PSO384G0426 Papaver somniferum HOM05D004834 ORTHO05D006247 1.6e-06 57.4 121 29.8
TWI53G0913 Tripterygium wilfordii HOM05D004834 ORTHO05D006247 1.6e-06 57.4 120 30.0
HanXRQChr14g0453201 Helianthus annuus HOM05D004834 ORTHO05D006247 2.1e-06 57.0 120 29.2
Pp3c20_18170 Physcomitrium patens HOM05D004834 ORTHO05D006247 2.1e-06 57.0 152 24.3
Actinidia03850 Actinidia chinensis HOM05D004834 ORTHO05D006247 2.7e-06 56.6 120 30.0
AUR62038413 Chenopodium quinoa HOM05D004834 ORTHO05D006247 2.7e-06 56.6 120 27.5
Gohir.D09G128200 Gossypium hirsutum HOM05D004834 ORTHO05D006247 2.7e-06 56.6 119 27.7
Psat3g026160 Pisum sativum HOM05D004834 ORTHO05D006247 2.7e-06 56.6 119 27.7
unitig_26.g9147 Utricularia gibba HOM05D004834 ORTHO05D006247 2.7e-06 56.6 153 27.5
vmacro07522 Vaccinium macrocarpon HOM05D004834 ORTHO05D006247 2.7e-06 56.6 123 29.3
SGA_v2.0_scaffold112G31558 Striga asiatica HOM05D004834 ORTHO05D006247 3.5e-06 56.2 119 28.6
TPR.G14418 Trifolium pratense HOM05D004834 ORTHO05D006247 3.5e-06 56.2 152 27.6
TAR633G1355 Trochodendron aralioides HOM05D004834 ORTHO05D006247 3.5e-06 56.2 120 29.2
Cpa.g.sc222.7 Carica papaya HOM05D004834 ORTHO05D006247 4.6e-06 55.8 119 27.7
CDE07G2068 Ceratophyllum demersum HOM05D004834 ORTHO05D006247 6.0e-06 55.5 120 29.2
Cre10.g434900 Chlamydomonas reinhardtii HOM05D004834 ORTHO05D006247 6.0e-06 55.5 122 28.7
PGSC0003DMG403008663 Solanum tuberosum HOM05D004834 ORTHO05D006247 6.0e-06 55.5 119 26.1
Atru.chr8.1261 Acer truncatum HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
CANSAT64G2176 Cannabis sativa HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
Cfa020095 Carpinus fangiana HOM05D004834 ORTHO05D006247 7.8e-06 55.1 120 28.3
CiPaw.09G024600 Carya illinoinensis HOM05D004834 ORTHO05D006247 7.8e-06 55.1 120 28.3
COL.COLO4_29472 Corchorus olitorius HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
FAN05G2138 Fragaria x ananassa HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
FAN05G4019 Fragaria x ananassa HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
Gohir.A09G131900 Gossypium hirsutum HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
Gorai.006G146800 Gossypium raimondii HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
Oeu035654.3 Olea europaea HOM05D004834 ORTHO05D006247 7.8e-06 55.1 151 25.8
THA.LOC104799266 Tarenaya hassleriana HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7
TAR636G2709 Trochodendron aralioides HOM05D004834 ORTHO05D006247 7.8e-06 55.1 120 29.2
HPP92_012150 Vanilla planifolia HOM05D004834 ORTHO05D006247 7.8e-06 55.1 119 27.7


User provided reference genes

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