Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 0.0e+00 1451.0 1071 100.0
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 0.0e+00 1168.7 1078 82.9
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 0.0e+00 1080.9 1081 79.1
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 0.0e+00 1079.3 1100 77.9
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 2.9e-311 1072.0 1076 76.4
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 6.3e-306 1054.3 1077 75.5
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 7.5e-299 1030.8 1083 73.4
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 7.5e-299 1030.8 1083 73.4
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 1.8e-297 1026.2 1077 78.6
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 5.4e-297 1024.6 1109 74.5
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 7.0e-297 1024.2 1104 74.5
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 9.2e-297 1023.8 1114 74.2
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 9.2e-297 1023.8 1083 76.5
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 1.2e-296 1023.5 1101 74.0
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 1.3e-295 1020.0 1081 74.4
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 3.0e-295 1018.8 1093 72.4
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 1.5e-294 1016.5 1112 73.0
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 7.3e-294 1014.2 1108 73.9
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 1.6e-293 1013.1 1107 73.7
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 3.6e-293 1011.9 1077 74.2
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 3.6e-293 1011.9 1105 74.2
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 2.6e-291 1005.7 1077 73.9
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 3.7e-290 1001.9 1079 71.5
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 1.1e-289 1000.3 1111 72.5
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 1.4e-289 1000.0 1079 73.2
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 3.2e-289 998.8 1111 72.4
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 4.1e-289 998.4 1079 72.4
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 5.4e-289 998.0 1069 71.7
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.7e-287 993.0 1084 72.0
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 2.3e-287 992.6 1076 63.0
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 3.0e-287 992.3 1081 75.9
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 6.6e-287 991.1 1069 73.7
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 6.6e-287 991.1 1081 75.8
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 6.6e-287 991.1 1073 76.3
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 8.6e-287 990.7 1111 72.1
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 1.6e-285 986.5 1127 74.0
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.6e-285 986.5 1069 71.8
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 6.2e-285 984.6 1078 72.3
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 1.4e-284 983.4 1069 71.4
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 1.4e-284 983.4 1227 54.3
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 1.4e-284 983.4 1076 71.1
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 1.7e-282 976.5 1082 72.6
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 2.2e-282 976.1 1077 77.8
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 2.4e-281 972.6 1107 71.9
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 1.6e-280 969.9 1071 70.6
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.6e-280 969.9 1081 71.7
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 2.1e-280 969.5 1070 75.2
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 2.1e-280 969.5 1074 71.9
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 3.5e-280 968.8 1070 75.9
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 5.1e-279 964.9 1077 69.8
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 1.1e-278 963.8 1078 70.4
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 1.2e-277 960.3 1076 70.4
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.8e-276 956.4 1078 73.1
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 1.5e-275 953.4 1066 71.5
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 6.4e-274 948.0 1070 71.2
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 8.4e-274 947.6 1069 75.6
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 2.4e-273 946.0 1079 72.3
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 1.2e-272 943.7 1075 70.0
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.0e-271 940.6 1077 71.0
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 2.3e-271 939.5 1076 70.3
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 3.9e-271 938.7 1073 71.6
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 1.2e-269 933.7 1083 69.3
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 2.4e-268 929.5 1082 68.8
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 6.9e-268 927.9 1108 70.6
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 2.2e-266 922.9 1074 71.6
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 6.4e-266 921.4 1079 68.4
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 1.9e-265 919.8 1078 70.8
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 3.5e-264 915.6 1072 72.0
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 1.6e-261 906.7 941 83.0
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 1.7e-258 896.7 1082 66.4
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 7.1e-257 891.3 1077 67.8
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 3.5e-256 889.0 1100 65.2
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 2.3e-255 886.3 1069 66.7
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 3.9e-255 885.6 1077 66.9
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 1.1e-254 884.0 1096 68.0
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.9e-254 883.2 1072 66.5
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 1.6e-253 880.2 1096 66.1
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 2.1e-253 879.8 1103 62.9
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 3.7e-253 879.0 1075 66.5
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.8e-253 878.6 1069 68.7
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 8.1e-253 877.9 1075 72.1
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 1.4e-252 877.1 1077 66.7
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 1.3e-250 870.5 1075 71.9
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 6.4e-250 868.2 1088 61.3
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.9e-249 866.7 1157 47.1
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 7.9e-248 861.3 1079 66.0
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 7.1e-241 838.2 486 83.3
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 2.2e-237 826.6 1084 64.6
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 2.8e-237 826.2 1034 66.2
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 3.7e-237 825.9 490 80.0
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 4.5e-235 818.9 838 79.6
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 6.1e-232 808.5 1078 66.2
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.3e-231 806.6 831 69.1
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 7.4e-230 801.6 489 79.1
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.2e-227 794.3 491 78.6
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 2.2e-218 763.5 1006 61.0
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 6.7e-215 751.9 490 74.7
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 2.6e-214 750.0 1069 59.0
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 2.6e-214 750.0 1063 56.0
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 2.3e-199 700.3 1073 61.2
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 9.5e-177 625.2 484 64.7
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 1.5e-174 617.8 911 65.2
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 8.1e-168 595.5 1002 55.1
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 3.9e-162 576.6 867 73.7
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.4e-143 515.0 445 61.3
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 4.8e-136 490.0 810 67.9
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 1.9e-132 478.0 1060 43.1
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 2.1e-131 474.6 1062 47.0
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 1.2e-118 432.2 253 78.7
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 6.5e-101 373.2 205 85.9
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 2.0e-97 361.7 498 44.8
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 2.6e-97 361.3 541 37.5
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 1.5e-92 345.5 202 81.2
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 4.4e-89 334.0 357 55.5
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 4.1e-87 327.4 706 59.2
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 4.8e-80 303.9 359 51.3
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 7.2e-76 290.0 448 37.7
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 2.3e-69 268.5 497 37.8
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 5.0e-69 267.3 362 55.5
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 4.1e-63 247.7 267 51.3
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 5.0e-61 240.7 324 58.3
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 1.5e-60 239.2 166 72.3
CSS0029353 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.4e-55 222.6 191 99.5
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 2.4e-55 221.9 108 100.0
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 5.2e-50 204.1 168 66.7
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 1.5e-44 186.0 93 100.0
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 2.1e-43 182.2 100 86.0
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 3.6e-43 181.4 133 60.2
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 8.9e-42 176.8 130 68.5
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 1.5e-41 176.0 130 68.5
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 1.1e-39 169.9 181 50.8
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 5.4e-39 167.5 137 67.2
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 7.1e-39 167.2 74 100.0
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 3.3e-36 158.3 93 82.8
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 7.1e-31 140.6 93 73.1
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 1.1e-28 133.3 82 82.9
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 1.1e-23 116.7 105 61.0
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 4.6e-22 111.3 121 51.2
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.3e-21 109.8 129 47.3
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.7e-16 92.8 119 43.7
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.5e-15 87.8 45 95.6
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 1.5e-12 79.7 166 31.3
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 1.3e-08 66.6 49 55.1
CSS0042095 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 6.5e-08 64.3 32 93.8
ATR0030G038 Amborella trichopoda HOM05D047453 ORTHO05D006199 9.3e-07 60.5 97 42.3
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.2e-06 60.1 81 42.0
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 1.2e-06 60.1 39 74.4


User provided reference genes

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