Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024108 Camellia sinensis var. sinensis HOM05D002001 ORTHO05D006833 3.6e-160 568.2 276 100.0
Actinidia36625 Actinidia chinensis HOM05D002001 ORTHO05D006833 1.1e-108 397.1 262 74.4
Rhsim09G0089400 Rhododendron simsii HOM05D002001 ORTHO05D006833 2.8e-96 355.9 264 67.8
TAR374G1090 Trochodendron aralioides HOM05D002001 ORTHO05D006833 1.3e-93 347.1 274 64.2
Hma1.2p1_0277F.1_g111670 Hydrangea macrophylla HOM05D002001 ORTHO05D006833 3.7e-93 345.5 260 65.4
vmacro10695 Vaccinium macrocarpon HOM05D002001 ORTHO05D006833 1.1e-92 344.0 264 66.3
Lj6A737G49 Lonicera japonica HOM05D002001 ORTHO05D006833 4.6e-91 338.6 263 66.2
Thecc.02G293000 Theobroma cacao HOM05D002001 ORTHO05D006833 3.9e-90 335.5 265 63.0
Haze_10877 Corylus avellana HOM05D002001 ORTHO05D006833 8.6e-90 334.3 313 54.0
GSVIVG01011657001 Vitis vinifera HOM05D002001 ORTHO05D006833 3.6e-88 328.9 261 64.4
Ciclev10014563m.g Citrus clementina HOM05D002001 ORTHO05D006833 3.1e-87 325.9 269 61.0
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 3.1e-87 325.9 264 61.7
Atru.chr11.917 Acer truncatum HOM05D002001 ORTHO05D006833 6.4e-85 318.2 266 58.6
TWI74G1639 Tripterygium wilfordii HOM05D002001 ORTHO05D006833 2.4e-84 316.2 265 58.5
Cpa.g.sc2.191 Carica papaya HOM05D002001 ORTHO05D006833 4.1e-84 315.5 267 59.2
Prupe.1G333600 Prunus persica HOM05D002001 ORTHO05D006833 5.4e-84 315.1 264 60.6
CiPaw.06G052200 Carya illinoinensis HOM05D002001 ORTHO05D006833 9.2e-84 314.3 262 59.9
Oeu062634.1 Olea europaea HOM05D002001 ORTHO05D006833 3.5e-83 312.4 261 59.4
Potri.010G106200 Populus trichocarpa HOM05D002001 ORTHO05D006833 1.0e-82 310.8 260 60.8
Sabra10G0077600 Salix brachista HOM05D002001 ORTHO05D006833 3.0e-82 309.3 262 60.7
MD16G1018300 Malus domestica HOM05D002001 ORTHO05D006833 1.1e-81 307.4 267 58.1
CANSAT01G0386 Cannabis sativa HOM05D002001 ORTHO05D006833 1.6e-80 303.5 261 59.8
Nitab4.5_0002803g0040 Nicotiana tabacum HOM05D002001 ORTHO05D006833 2.8e-80 302.8 265 57.0
Duzib251G0919 Durio zibethinus HOM05D002001 ORTHO05D006833 4.7e-80 302.0 262 57.6
FvH4_4g33520 Fragaria vesca HOM05D002001 ORTHO05D006833 4.7e-80 302.0 254 59.1
Gohir.A04G142900 Gossypium hirsutum HOM05D002001 ORTHO05D006833 4.7e-80 302.0 265 58.9
Nitab4.5_0002414g0090 Nicotiana tabacum HOM05D002001 ORTHO05D006833 6.2e-80 301.6 263 57.0
Oeu062636.1 Olea europaea HOM05D002001 ORTHO05D006833 1.4e-79 300.4 256 58.6
FAN12G2518 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.8e-79 300.1 254 58.7
FAN22G0254 Fragaria x ananassa HOM05D001103 ORTHO05D006833 1.8e-79 300.1 254 58.7
Gorai.012G182600 Gossypium raimondii HOM05D002001 ORTHO05D006833 2.4e-79 299.7 260 58.1
RcHm_v2.0_Chr3g0480131 Rosa chinensis HOM05D002001 ORTHO05D006833 2.4e-79 299.7 261 59.0
Gohir.D04G186200 Gossypium hirsutum HOM05D002001 ORTHO05D006833 6.9e-79 298.1 260 58.1
RcHm_v2.0_Chr4g0443031 Rosa chinensis HOM05D002001 ORTHO05D006833 1.5e-78 297.0 263 58.6
FAN17G2388 Fragaria x ananassa HOM05D002001 ORTHO05D006833 2.6e-78 296.2 266 56.4
DCAR_026803 Daucus carota HOM05D002001 ORTHO05D006833 4.4e-78 295.4 263 57.8
FAN07G1867 Fragaria x ananassa HOM05D002001 ORTHO05D006833 1.3e-77 293.9 255 57.6
Peaxi162Scf00337g00816 Petunia axillaris HOM05D002001 ORTHO05D006833 4.2e-76 288.9 265 53.6
Eucgr.G02104 Eucalyptus grandis HOM05D002001 ORTHO05D006833 7.8e-75 284.6 264 54.9
PGSC0003DMG400029468 Solanum tuberosum HOM05D002001 ORTHO05D006833 1.0e-74 284.3 268 53.7
CsaV3_2G036200 Cucumis sativus L. HOM05D002001 ORTHO05D006833 8.7e-74 281.2 297 50.5
PGR142G4413 Punica granatum HOM05D002001 ORTHO05D006833 2.5e-73 279.6 256 53.1
MELO3C021825.2 Cucumis melo HOM05D002001 ORTHO05D006833 5.6e-73 278.5 300 50.0
Manes.17G084001 Manihot esculenta HOM05D002001 ORTHO05D006833 7.3e-73 278.1 246 58.9
Cc11_g07310 Coffea canephora HOM05D002001 ORTHO05D006833 2.1e-72 276.6 261 55.2
Solyc04g008030.2 Solanum lycopersicum HOM05D002001 ORTHO05D006833 3.6e-72 275.8 265 52.8
Sopen04g003170 Solanum pennellii HOM05D002001 ORTHO05D006833 4.8e-72 275.4 265 52.8
Nn4g24394 Nelumbo nucifera HOM05D002001 ORTHO05D006833 2.4e-71 273.1 294 48.6
Lsat_1_v5_gn_3_53521 Lactuca sativa HOM05D002001 ORTHO05D006833 1.2e-70 270.8 260 52.3
Sc04g0007240 Simmondsia chinensis HOM05D002001 ORTHO05D006833 9.9e-70 267.7 248 52.4
Sed0002570 Sechium edule HOM05D002001 ORTHO05D006833 6.4e-69 265.0 299 48.2
ClCG09G016760 Citrullus lanatus HOM05D002001 ORTHO05D006833 1.2e-67 260.8 282 50.0
ECA246G3445 Erigeron canadensis HOM05D002001 ORTHO05D006833 1.2e-67 260.8 266 51.5
CAN.G74.9 Capsicum annuum HOM05D002001 ORTHO05D006833 4.6e-67 258.8 266 52.3
PSO017G4060 Papaver somniferum HOM05D002001 ORTHO05D006833 6.7e-66 255.0 298 47.7
Migut.F01878 Erythranthe guttata HOM05D002001 ORTHO05D006833 1.1e-65 254.2 265 50.6
MSTRG.8103 Avicennia marina HOM05D002001 ORTHO05D006833 9.6e-65 251.1 263 50.2
HanXRQChr17g0534331 Helianthus annuus HOM05D002001 ORTHO05D006833 2.0e-62 243.4 260 48.1
AL5G10820 Arabidopsis lyrata HOM05D002001 ORTHO05D006833 9.6e-57 224.6 255 45.1
Dinv10473 Davidia involucrata HOM05D002001 ORTHO05D006833 2.8e-56 223.0 150 74.0
AT2G01730 Arabidopsis thaliana HOM05D002001 ORTHO05D006833 1.8e-55 220.3 255 43.9
SHI04310 Sapria himalayana HOM05D002001 ORTHO05D006833 2.4e-55 219.9 265 43.8
HPP92_024776 Vanilla planifolia HOM05D001290 ORTHO05D006833 4.0e-55 219.2 259 45.2
THA.LOC104805082 Tarenaya hassleriana HOM05D002001 ORTHO05D006833 5.3e-55 218.8 257 45.5
Carub.0005s0067 Capsella rubella HOM05D002001 ORTHO05D006833 1.5e-54 217.2 257 46.3
Thhalv10005303m.g Eutrema salsugineum HOM05D002001 ORTHO05D006833 5.8e-54 215.3 255 42.7
Aa31LG2G8170 Aethionema arabicum HOM05D002001 ORTHO05D006833 1.0e-53 214.5 256 43.4
Nn4g24387 Nelumbo nucifera HOM05D002001 ORTHO05D006833 2.9e-53 213.0 259 44.8
Sp2g13180 Schrenkiella parvula HOM05D002001 ORTHO05D006833 3.8e-53 212.6 257 43.6
CARHR144290 Cardamine hirsuta HOM05D002001 ORTHO05D006833 4.9e-53 212.2 255 43.9
A02p32290 Brassica napus HOM05D002001 ORTHO05D006833 5.5e-52 208.8 263 43.0
BraA02t08246Z Brassica rapa HOM05D002001 ORTHO05D006833 5.5e-52 208.8 263 43.0
BcaB07g30376 Brassica carinata HOM05D002001 ORTHO05D006833 3.5e-51 206.1 258 42.6
BcaC03g17071 Brassica carinata HOM05D002001 ORTHO05D006833 6.0e-51 205.3 263 42.6
C02p49890 Brassica napus HOM05D002001 ORTHO05D006833 6.0e-51 205.3 263 42.6
BolC2t11068H Brassica oleracea HOM05D002001 ORTHO05D006833 6.0e-51 205.3 263 42.6
Ca_12539_v3 Cicer arietinum L. HOM05D002001 ORTHO05D006833 4.5e-46 189.1 149 63.8
Hund02009 Selenicereus undatus HOM05D002001 ORTHO05D006833 1.0e-45 188.0 144 64.6
TPR.G36871 Trifolium pratense HOM05D002001 ORTHO05D006833 2.9e-45 186.4 149 62.4
Hund02008 Selenicereus undatus HOM05D002001 ORTHO05D006833 3.8e-45 186.0 144 63.9
Aqoxy1G03746 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 1.1e-44 184.5 152 58.6
Aqoxy3G02830 Aquilegia oxysepala HOM05D002001 ORTHO05D006833 1.1e-44 184.5 152 58.6
Phvul.003G018200 Phaseolus vulgaris HOM05D002001 ORTHO05D006833 1.9e-44 183.7 147 60.5
Glyma.02G085400 Glycine max HOM05D002001 ORTHO05D006833 2.5e-44 183.3 147 62.6
AUR62030423 Chenopodium quinoa HOM05D002001 ORTHO05D006833 3.2e-44 183.0 143 65.0
Psat6g046600 Pisum sativum HOM05D002001 ORTHO05D006833 3.2e-44 183.0 145 63.4
Lalb_Chr10g0095701 Lupinus albus HOM05D002001 ORTHO05D006833 5.5e-44 182.2 145 63.4
ATR0753G129 Amborella trichopoda HOM05D002001 ORTHO05D006833 9.4e-44 181.4 342 34.5
EL10Ac4g08758 Beta vulgaris HOM05D002001 ORTHO05D006833 2.1e-43 180.3 137 61.3
AUR62010473 Chenopodium quinoa HOM05D002001 ORTHO05D006833 2.7e-43 179.9 137 66.4
CDE04G3481 Ceratophyllum demersum HOM05D002001 ORTHO05D006833 1.0e-42 177.9 157 55.4
SEGI_40984 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 3.9e-42 176.0 250 40.0
Lj5g0002389 Lotus japonicus HOM05D002001 ORTHO05D006833 6.7e-42 175.3 179 52.0
VMungo0720G0546 Vigna mungo HOM05D002001 ORTHO05D006833 1.5e-41 174.1 147 57.8
Lj2g0009645 Lotus japonicus HOM05D002001 ORTHO05D006833 2.0e-41 173.7 179 51.4
Lj1g0014242 Lotus japonicus HOM05D002001 ORTHO05D006833 2.5e-41 173.3 179 51.4
SEGI_18225 Sequoiadendron giganteum HOM05D002001 ORTHO05D006833 1.3e-40 171.0 238 40.8
Medtr1g032500 Medicago truncatula HOM05D002001 ORTHO05D006833 1.4e-39 167.5 151 58.3
Actinidia12396 Actinidia chinensis HOM05D002001 ORTHO05D006833 1.8e-39 167.2 151 58.3
arahy.Tifrunner.gnm1.ann1.0HZN60 Arachis hypogaea HOM05D002001 ORTHO05D006833 2.5e-36 156.8 145 54.5
arahy.Tifrunner.gnm1.ann1.DJZM3B Arachis hypogaea HOM05D002001 ORTHO05D006833 4.2e-36 156.0 145 54.5
Os09g0397900 Oryza sativa ssp. japonica HOM05D002001 ORTHO05D006833 8.2e-32 141.7 159 50.3
Mapoly0023s0072 Marchantia polymorpha HOM05D002001 ORTHO05D006833 1.4e-26 124.4 162 41.4
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 6.3e-24 115.5 162 40.1
SMO139G0046 Selaginella moellendorffii HOM05D002001 ORTHO05D006833 1.1e-23 114.8 161 40.4
Pp3c5_16690 Physcomitrium patens HOM05D002001 ORTHO05D006833 7.0e-23 112.1 180 36.1
RcHm_v2.0_Chr2g0101461 Rosa chinensis HOM05D002001 ORTHO05D006833 4.2e-20 102.8 56 87.5
RcHm_v2.0_Chr6g0263901 Rosa chinensis HOM05D002001 ORTHO05D006833 4.2e-20 102.8 56 87.5
Hund24272 Selenicereus undatus HOM05D002001 ORTHO05D006833 4.7e-19 99.4 56 80.4
CBR_g20441 Chara braunii HOM05D002001 ORTHO05D006833 2.4e-15 87.0 89 43.8
MBI19_g08381_MAGBIO Magnolia biondii HOM05D002001 ORTHO05D006833 7.7e-14 82.0 43 86.0
Haze_26947 Corylus avellana HOM05D002001 ORTHO05D006833 1.1e-12 78.2 164 32.3
unitig_46.g18398 Utricularia gibba HOM05D002001 ORTHO05D006833 8.8e-10 68.6 151 33.8
Cre02.g080100 Chlamydomonas reinhardtii HOM05D002001 ORTHO05D006833 2.6e-09 67.0 63 42.9


User provided reference genes

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