Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 5.8e-245 850.5 447 100.0
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.8e-199 698.0 455 82.4
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.0e-189 666.0 456 75.4
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.7e-188 662.9 449 75.9
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.2e-188 662.5 453 77.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 7.2e-187 657.5 453 75.5
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 8.0e-186 654.1 448 76.8
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 1.0e-185 653.7 448 75.7
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.0e-185 653.7 459 76.9
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 8.8e-185 650.6 460 75.9
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.2e-184 650.2 461 75.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.0e-184 649.4 440 76.6
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 7.5e-184 647.5 453 75.9
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.3e-183 646.7 452 76.1
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.3e-183 646.7 455 74.9
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.8e-183 644.8 452 76.1
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 4.8e-183 644.8 452 75.9
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 2.4e-182 642.5 455 76.0
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 5.3e-182 641.3 452 75.9
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 7.0e-182 641.0 458 74.5
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 7.0e-182 641.0 452 75.9
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 2.7e-181 639.0 454 74.2
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 2.7e-181 639.0 453 75.3
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 7.7e-181 637.5 455 74.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.3e-180 636.7 455 73.4
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 2.2e-180 636.0 453 74.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.9e-179 632.9 453 75.3
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 3.2e-179 632.1 454 74.0
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.2e-179 632.1 456 72.8
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 4.2e-179 631.7 457 75.1
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.2e-179 631.7 451 74.9
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 7.2e-179 630.9 453 74.0
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 9.4e-179 630.6 450 74.9
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.6e-178 629.8 453 73.7
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 3.0e-177 625.5 451 74.3
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 5.2e-177 624.8 456 74.8
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.2e-176 623.6 455 73.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 2.6e-176 622.5 457 72.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 2.6e-176 622.5 451 74.1
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 3.4e-176 622.1 443 74.9
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.3e-175 620.2 457 74.4
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.7e-175 619.8 457 74.4
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.7e-175 619.8 461 72.9
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.7e-175 619.8 451 72.9
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.7e-175 618.6 452 72.8
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 4.8e-175 618.2 451 73.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 4.8e-175 618.2 453 73.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 8.3e-175 617.5 453 74.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 1.4e-174 616.7 457 72.6
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 5.4e-174 614.8 453 73.7
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 5.4e-174 614.8 453 73.7
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 9.1e-174 614.0 457 72.0
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 2.0e-173 612.8 449 73.3
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.7e-173 612.5 454 72.5
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 7.7e-173 610.9 443 72.0
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 1.0e-172 610.5 443 72.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 2.3e-172 609.4 399 80.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.9e-172 609.0 429 76.2
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.9e-172 609.0 443 71.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.5e-171 606.7 453 72.2
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 9.5e-171 604.0 451 73.4
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.6e-170 603.2 452 69.7
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 5.2e-169 598.2 459 71.5
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 3.5e-165 585.5 361 82.3
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 7.8e-165 584.3 455 69.5
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.3e-164 583.6 453 70.6
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 1.3e-164 583.6 433 72.3
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 8.6e-164 580.9 452 70.4
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 8.6e-164 580.9 452 70.4
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.9e-163 579.7 457 68.9
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.5e-163 579.3 455 70.1
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.5e-163 579.3 449 68.4
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 5.6e-163 578.2 451 67.8
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 7.3e-163 577.8 453 68.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.6e-162 575.5 458 67.5
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.1e-162 574.7 449 68.4
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.4e-161 573.5 458 66.8
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 3.1e-161 572.4 444 70.7
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 4.0e-161 572.0 449 67.9
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 5.2e-161 571.6 341 84.8
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 6.8e-161 571.2 449 68.2
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 8.9e-161 570.9 449 67.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 8.3e-159 564.3 450 67.6
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.4e-158 563.5 459 68.0
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 7.0e-158 561.2 451 67.0
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.8e-157 557.8 454 67.0
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 5.0e-156 555.1 449 66.8
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 2.5e-155 552.7 449 66.6
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 9.5e-155 550.8 449 66.1
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 9.5e-155 550.8 449 66.1
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 9.5e-155 550.8 449 66.1
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 9.5e-155 550.8 453 67.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 9.5e-155 550.8 453 67.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.2e-154 550.4 425 67.3
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.7e-154 548.5 449 65.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 4.7e-154 548.5 361 77.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.1e-153 545.8 449 65.7
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 5.2e-153 545.0 451 65.4
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 4.3e-147 525.4 354 74.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 7.3e-147 524.6 452 64.4
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.9e-142 510.0 449 63.0
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 6.8e-137 491.5 311 79.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 6.8e-137 491.5 320 78.4
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.6e-136 489.6 452 61.5
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.3e-132 476.5 290 85.2
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 3.0e-132 476.1 307 80.1
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 8.1e-122 441.4 282 79.8
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.4e-118 430.6 372 62.4
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 9.3e-118 427.9 295 73.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.8e-116 423.7 374 62.3
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 5.6e-115 418.7 372 60.2
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 3.1e-113 412.9 278 73.7
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 9.0e-113 411.4 377 57.3
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 8.4e-111 404.8 364 57.7
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 5.5e-110 402.1 366 57.4
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.0e-108 397.9 284 73.2
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 1.2e-101 374.4 323 61.9
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-100 370.9 369 56.1
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.5e-99 366.7 369 56.1
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.4e-94 350.9 334 56.6
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 7.9e-93 345.1 353 52.4
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 6.7e-92 342.0 367 52.3
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 1.3e-90 337.8 374 50.8
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 6.7e-84 315.5 369 50.7
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 5.3e-81 305.8 383 45.7
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.2e-77 294.7 243 63.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.0e-68 265.0 332 48.5
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 6.8e-52 209.1 150 68.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 5.0e-47 193.0 345 38.3
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.4e-42 176.0 163 57.1
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 4.1e-41 173.3 222 46.4
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.4e-36 158.3 104 73.1
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.1e-33 146.0 91 74.7
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.1e-32 144.4 118 61.9
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.1e-31 139.8 98 71.4
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.5e-30 137.5 171 47.4
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 2.7e-24 117.5 73 82.2
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.6e-21 107.1 87 71.3
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.5e-16 90.5 149 39.6
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 3.6e-13 80.5 75 53.3
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.5e-08 63.9 46 69.6
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 5.1e-07 60.1 155 32.9


User provided reference genes

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