Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023852 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 1.5e-189 666.0 327 100.0
CSS0020069 Camellia sinensis var. sinensis HOM05D002009 ORTHO05D005728 4.2e-136 488.4 336 75.0
vmacro12782 Vaccinium macrocarpon HOM05D002009 ORTHO05D005728 5.0e-129 464.9 343 70.0
Rhsim10G0131800 Rhododendron simsii HOM05D002009 ORTHO05D005728 8.0e-127 457.6 336 69.9
Actinidia06606 Actinidia chinensis HOM05D002009 ORTHO05D005728 1.0e-126 457.2 336 69.0
Dinv34360 Davidia involucrata HOM05D002009 ORTHO05D005728 3.0e-126 455.7 336 68.8
Solyc10g081250.3 Solanum lycopersicum HOM05D002009 ORTHO05D005728 1.2e-122 443.7 338 66.9
VMungo1309G0642 Vigna mungo HOM05D002009 ORTHO05D005728 2.0e-122 443.0 336 68.2
GSVIVG01026455001 Vitis vinifera HOM05D002009 ORTHO05D005728 2.7e-122 442.6 371 63.6
Haze_25289 Corylus avellana HOM05D002009 ORTHO05D005728 5.9e-122 441.4 336 67.6
Gohir.D13G143900 Gossypium hirsutum HOM05D002009 ORTHO05D005728 5.9e-122 441.4 336 66.7
Gorai.013G160900 Gossypium raimondii HOM05D002009 ORTHO05D005728 5.9e-122 441.4 336 66.7
Sopen10g031750 Solanum pennellii HOM05D002009 ORTHO05D005728 5.9e-122 441.4 338 66.6
Eucgr.I00173 Eucalyptus grandis HOM05D002009 ORTHO05D005728 7.8e-122 441.0 338 66.3
TAR376G0128 Trochodendron aralioides HOM05D002009 ORTHO05D005728 1.0e-121 440.7 362 64.1
Cfa002919 Carpinus fangiana HOM05D002009 ORTHO05D005728 1.3e-121 440.3 336 67.3
Cc07_g18900 Coffea canephora HOM05D002009 ORTHO05D005728 1.7e-121 439.9 336 66.7
COL.COLO4_09630 Corchorus olitorius HOM05D002009 ORTHO05D005728 1.7e-121 439.9 336 65.5
CAN.G128.115 Capsicum annuum HOM05D002009 ORTHO05D005728 3.9e-121 438.7 338 66.0
Glyma.06G155300 Glycine max HOM05D002009 ORTHO05D005728 3.9e-121 438.7 336 66.4
Gohir.A13G139100 Gossypium hirsutum HOM05D002009 ORTHO05D005728 3.9e-121 438.7 336 66.4
Thecc.07G044100 Theobroma cacao HOM05D002009 ORTHO05D005728 8.6e-121 437.6 336 65.8
CiPaw.03G119300 Carya illinoinensis HOM05D002009 ORTHO05D005728 1.5e-120 436.8 336 66.4
arahy.Tifrunner.gnm1.ann1.7D624Q Arachis hypogaea HOM05D002009 ORTHO05D005728 1.9e-120 436.4 336 66.1
MSTRG.23471 Avicennia marina HOM05D002009 ORTHO05D005728 4.3e-120 435.3 360 63.6
Manes.12G077400 Manihot esculenta HOM05D002009 ORTHO05D005728 4.3e-120 435.3 336 66.4
Glyma.04G210700 Glycine max HOM05D002009 ORTHO05D005728 5.6e-120 434.9 336 66.7
Phvul.009G155200 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 5.6e-120 434.9 336 66.7
Sc16g0009480 Simmondsia chinensis HOM05D002009 ORTHO05D005728 5.6e-120 434.9 336 65.5
CsaV3_6G041210 Cucumis sativus L. HOM05D002009 ORTHO05D005728 7.3e-120 434.5 336 65.5
Psat5g060760 Pisum sativum HOM05D002009 ORTHO05D005728 1.2e-119 433.7 336 66.1
Sed0004291 Sechium edule HOM05D002009 ORTHO05D005728 1.6e-119 433.3 336 65.2
TWI31G0245 Tripterygium wilfordii HOM05D002009 ORTHO05D005728 2.1e-119 433.0 336 65.2
MELO3C024596.2 Cucumis melo HOM05D002009 ORTHO05D005728 6.1e-119 431.4 336 64.9
CANSAT01G2904 Cannabis sativa HOM05D002009 ORTHO05D005728 8.0e-119 431.0 336 65.5
Nn5g28479 Nelumbo nucifera HOM05D002009 ORTHO05D005728 4.0e-118 428.7 336 65.2
Ciclev10000086m.g Citrus clementina HOM05D002009 ORTHO05D005728 6.8e-118 427.9 360 63.1
DCAR_001198 Daucus carota HOM05D002009 ORTHO05D005728 2.6e-117 426.0 352 63.6
MD00G1053300 Malus domestica HOM05D002009 ORTHO05D005728 3.4e-117 425.6 338 64.8
Lalb_Chr23g0272641 Lupinus albus HOM05D002009 ORTHO05D005728 5.8e-117 424.9 352 63.4
MBI03_g39989_MAGBIO Magnolia biondii HOM05D002009 ORTHO05D005728 5.8e-117 424.9 336 64.0
Atru.chr4.962 Acer truncatum HOM05D002009 ORTHO05D005728 7.5e-117 424.5 352 62.8
Lsat_1_v5_gn_5_68921 Lactuca sativa HOM05D002009 ORTHO05D005728 9.8e-117 424.1 336 64.6
Sabra05G0054400 Salix brachista HOM05D002009 ORTHO05D005728 9.8e-117 424.1 336 64.0
Lj1g0002975 Lotus japonicus HOM05D002009 ORTHO05D005728 1.3e-116 423.7 352 63.1
ClCG01G015100 Citrullus lanatus HOM05D002009 ORTHO05D005728 1.7e-116 423.3 369 59.9
Potri.005G065800 Populus trichocarpa HOM05D002009 ORTHO05D005728 3.7e-116 422.2 336 63.1
arahy.Tifrunner.gnm1.ann1.BG9WT0 Arachis hypogaea HOM05D002009 ORTHO05D005728 8.3e-116 421.0 336 64.9
Aa31LG1G17940 Aethionema arabicum HOM05D002009 ORTHO05D005728 1.1e-115 420.6 336 63.1
Phvul.005G019000 Phaseolus vulgaris HOM05D002009 ORTHO05D005728 1.1e-115 420.6 336 64.9
AUR62006845 Chenopodium quinoa HOM05D002009 ORTHO05D005728 1.9e-115 419.9 336 64.3
SGA_v2.0_scaffold273G46462 Striga asiatica HOM05D002009 ORTHO05D005728 9.2e-115 417.5 341 63.6
THA.LOC104818425 Tarenaya hassleriana HOM05D002009 ORTHO05D005728 9.2e-115 417.5 368 60.1
Lj2C610T1 Lonicera japonica HOM05D002009 ORTHO05D005728 1.2e-114 417.2 337 64.7
Os11g0186400 Oryza sativa ssp. japonica HOM05D002009 ORTHO05D005728 1.6e-114 416.8 336 64.0
SHI11495 Sapria himalayana HOM05D002009 ORTHO05D005728 6.0e-114 414.8 336 64.0
TPR.G28192 Trifolium pratense HOM05D002009 ORTHO05D005728 1.0e-113 414.1 336 63.1
Migut.H00864 Erythranthe guttata HOM05D002009 ORTHO05D005728 1.7e-113 413.3 352 60.8
Thhalv10003565m.g Eutrema salsugineum HOM05D002009 ORTHO05D005728 3.0e-113 412.5 373 58.7
Zm00001eb201340 Zea mays HOM05D002009 ORTHO05D005728 8.6e-113 411.0 336 62.2
EL10Ac4g09604 Beta vulgaris HOM05D002009 ORTHO05D005728 1.5e-112 410.2 336 62.2
HanXRQChr12g0380541 Helianthus annuus HOM05D002009 ORTHO05D005728 1.5e-112 410.2 338 62.4
RcHm_v2.0_Chr2g0122111 Rosa chinensis HOM05D002009 ORTHO05D005728 2.5e-112 409.5 336 62.2
Sp2g27020 Schrenkiella parvula HOM05D002009 ORTHO05D005728 2.5e-112 409.5 336 61.9
C03p62380 Brassica napus HOM05D002009 ORTHO05D005728 5.6e-112 408.3 352 59.9
AL8G41220 Arabidopsis lyrata HOM05D002009 ORTHO05D005728 1.2e-111 407.1 374 57.5
Hund07251 Selenicereus undatus HOM05D002009 ORTHO05D005728 1.2e-111 407.1 330 62.7
ATR0584G016 Amborella trichopoda HOM05D002009 ORTHO05D005728 1.6e-111 406.8 336 60.1
BolC3t18498H Brassica oleracea HOM05D002009 ORTHO05D005728 2.8e-111 406.0 352 59.7
FvH4_1g24660 Fragaria vesca HOM05D002009 ORTHO05D005728 2.8e-111 406.0 336 61.3
A06p30580 Brassica napus HOM05D002009 ORTHO05D005728 6.2e-111 404.8 352 59.7
FAN23G2639 Fragaria x ananassa HOM05D002009 ORTHO05D005728 8.0e-111 404.4 336 61.3
QL10p042354 Quercus lobata HOM05D002009 ORTHO05D005728 8.0e-111 404.4 280 70.7
AT5G63960 Arabidopsis thaliana HOM05D002009 ORTHO05D005728 1.8e-110 403.3 374 57.0
Carub.0008s2474 Capsella rubella HOM05D002009 ORTHO05D005728 2.3e-110 402.9 374 57.0
HPP92_005659 Vanilla planifolia HOM05D002009 ORTHO05D005728 2.3e-110 402.9 336 61.0
AUR62000499 Chenopodium quinoa HOM05D002009 ORTHO05D005728 1.2e-109 400.6 395 54.9
Peaxi162Scf00153g00816 Petunia axillaris HOM05D002009 ORTHO05D005728 1.3e-108 397.1 283 69.6
BraA06t26010Z Brassica rapa HOM05D002009 ORTHO05D005728 2.9e-108 396.0 384 54.9
Ca_16976_v3 Cicer arietinum L. HOM05D002009 ORTHO05D005728 1.9e-107 393.3 326 64.4
CARHR277870 Cardamine hirsuta HOM05D002009 ORTHO05D005728 2.1e-106 389.8 372 55.4
Medtr3g096525 Medicago truncatula HOM05D002009 ORTHO05D005728 3.5e-106 389.0 337 59.9
Migut.E01506 Erythranthe guttata HOM05D002009 ORTHO05D005728 1.3e-105 387.1 368 56.5
ECA233G2868 Erigeron canadensis HOM05D002009 ORTHO05D005728 6.6e-105 384.8 337 59.6
Aqoxy5G02298 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 1.9e-104 383.3 354 58.2
PSO170G4442 Papaver somniferum HOM05D002009 ORTHO05D005728 3.3e-104 382.5 372 55.9
CDE06G1389 Ceratophyllum demersum HOM05D002009 ORTHO05D005728 1.6e-103 380.2 279 65.2
PSO017G4864 Papaver somniferum HOM05D002009 ORTHO05D005728 4.7e-103 378.6 372 55.6
BcaC01g02652 Brassica carinata HOM05D002009 ORTHO05D005728 8.1e-103 377.9 297 64.3
DCAR_001197 Daucus carota HOM05D002009 ORTHO05D005728 2.3e-102 376.3 336 57.1
Aa31LG3G3040 Aethionema arabicum HOM05D002009 ORTHO05D005728 4.9e-100 368.6 379 53.8
MD07G1029900 Malus domestica HOM05D002009 ORTHO05D005728 1.2e-98 364.0 279 66.7
SEGI_14345 Sequoiadendron giganteum HOM05D002009 ORTHO05D005728 4.7e-95 352.1 297 58.2
Pp3c27_3350 Physcomitrium patens HOM05D002009 ORTHO05D005728 1.8e-94 350.1 336 53.6
SMO232G0005 Selaginella moellendorffii HOM05D002009 ORTHO05D005728 3.3e-88 329.3 318 52.2
Mapoly0087s0021 Marchantia polymorpha HOM05D002009 ORTHO05D005728 1.5e-85 320.5 338 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4377 Anthoceros agrestis HOM05D002009 ORTHO05D005728 3.2e-83 312.8 336 49.4
Pp3c6_19160 Physcomitrium patens HOM05D002009 ORTHO05D005728 3.1e-78 296.2 310 49.4
Migut.B01032 Erythranthe guttata HOM05D002009 ORTHO05D005728 4.5e-77 292.4 221 64.3
Ah.06g190900 Amaranthus hybridus HOM05D002009 ORTHO05D005728 1.9e-75 287.0 270 57.0
CBR_g38906 Chara braunii HOM05D002009 ORTHO05D005728 7.1e-75 285.0 339 44.2
Aqoxy2G03871 Aquilegia oxysepala HOM05D002009 ORTHO05D005728 2.2e-68 263.5 339 46.6
Duzib268G1329 Durio zibethinus HOM05D002009 ORTHO05D005728 2.5e-67 260.0 315 48.6
Prupe.4G273600 Prunus persica HOM05D002009 ORTHO05D005728 1.0e-65 254.6 315 47.6
Cpa.g.sc42.182 Carica papaya HOM05D002009 ORTHO05D005728 2.0e-61 240.4 165 71.5
PRCOL_00002177 Prasinoderma coloniale HOM05D002009 ORTHO05D005728 1.8e-57 227.3 349 37.5
Psat3g068200 Pisum sativum HOM05D002009 ORTHO05D005728 4.8e-55 219.2 165 64.8
Nitab4.5_0000062g0490 Nicotiana tabacum HOM05D002009 ORTHO05D005728 6.9e-54 215.3 190 60.0
MCO05G447 Micromonas commoda HOM05D002009 ORTHO05D005728 3.4e-53 213.0 348 35.1
Nitab4.5_0003690g0040 Nicotiana tabacum HOM05D002009 ORTHO05D005728 3.0e-49 199.9 138 68.8
Cre01.g015250 Chlamydomonas reinhardtii HOM05D002009 ORTHO05D005728 4.8e-47 192.6 345 34.5
Cfa025827 Carpinus fangiana HOM05D002009 ORTHO05D005728 1.5e-35 154.5 322 31.4
MD15G1136200 Malus domestica HOM05D002009 ORTHO05D030069 1.1e-30 138.3 196 43.4
BcaC01g02650 Brassica carinata HOM05D002009 ORTHO05D005728 3.5e-29 133.3 85 76.5
FAN19G2450 Fragaria x ananassa HOM05D002009 ORTHO05D005728 3.6e-26 123.2 133 51.1
FAN26G3211 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.4e-25 121.3 133 50.4
FAN28G0184 Fragaria x ananassa HOM05D002009 ORTHO05D005728 1.4e-25 121.3 133 50.4
Lj6g0003801 Lotus japonicus HOM05D002009 ORTHO05D005728 1.4e-17 94.7 94 54.3
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.4e-16 89.7 137 40.1
Actinidia20062 Actinidia chinensis HOM05D002009 ORTHO05D030873 9.8e-16 88.6 54 77.8
SMO232G0106 Selaginella moellendorffii HOM05D002009 ORTHO05D030069 1.3e-15 88.2 194 30.9
AL3G45200 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 3.1e-14 83.6 146 39.7
AL4G19520 Arabidopsis lyrata HOM05D002850 ORTHO05D003285 7.0e-14 82.4 39 87.2
SMO232G0095 Selaginella moellendorffii HOM05D002009 ORTHO05D030069 4.5e-13 79.7 122 39.3
Nitab4.5_0000062g0470 Nicotiana tabacum HOM05D002009 ORTHO05D005728 5.6e-11 72.8 60 63.3
Nitab4.5_0003690g0050 Nicotiana tabacum HOM05D002009 ORTHO05D005728 2.8e-10 70.5 34 91.2
DCAR_002961 Daucus carota HOM05D003717 ORTHO05D000210 4.7e-10 69.7 60 65.0
DCAR_015113 Daucus carota HOM05D000109 ORTHO05D000210 1.0e-09 68.6 63 60.3
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-07 59.3 29 79.3


User provided reference genes

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