Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 2050.0 1011 100.0
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 2011.9 1024 97.8
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1716.8 1025 82.2
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1685.6 1026 80.8
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1679.1 1024 79.7
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1617.8 1025 77.1
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1605.5 1024 76.5
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1573.5 1024 74.5
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1530.0 1019 72.3
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1516.9 1023 73.2
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1512.7 1015 71.4
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1503.0 1026 71.8
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1501.1 1018 71.5
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1499.2 1017 71.0
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1492.6 1026 70.9
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1492.6 1026 71.2
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1492.2 992 73.3
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1491.5 1016 70.7
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1486.5 1027 69.8
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1480.7 1026 70.7
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1480.3 1020 70.3
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1478.4 1021 71.0
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1475.3 1021 71.0
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1473.4 1066 69.1
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1468.8 1020 69.1
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1468.0 1023 70.4
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1464.9 1021 70.3
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1463.0 1018 69.9
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1462.2 1019 70.1
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1462.2 1027 68.9
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1459.5 1030 69.5
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1458.0 1031 69.6
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1456.0 1020 68.4
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1455.7 1020 69.3
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1454.1 1020 69.3
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1452.6 1020 69.1
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1452.6 1031 69.0
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1450.6 1031 68.5
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1446.4 1028 67.8
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1440.2 1028 67.3
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1439.5 1021 69.0
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1437.6 1010 68.8
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1436.4 1002 69.6
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1435.6 1018 67.9
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1432.9 1018 68.7
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1427.2 986 71.6
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1425.6 1013 67.8
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1418.3 1019 68.5
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1418.3 1024 68.0
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1416.4 1020 67.4
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1415.6 1018 68.0
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1414.4 1024 67.1
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1414.1 1013 67.4
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1407.9 1017 67.6
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1407.1 1014 66.9
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1406.3 1026 66.9
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1405.6 1132 63.3
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1404.0 1024 66.8
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1403.3 1024 66.5
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1402.9 1016 66.9
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1402.5 1034 67.2
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1402.1 1022 67.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1401.0 1024 66.1
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1399.8 1015 66.8
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1398.6 1018 66.7
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1397.9 1024 67.8
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1397.1 1051 65.0
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1393.3 1061 64.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1393.3 1018 66.4
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1392.1 976 68.5
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1391.3 1083 63.6
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1386.7 1019 65.0
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1383.6 1024 67.1
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1378.6 1107 61.7
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1374.8 1016 66.2
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1362.8 1027 65.0
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1344.3 1032 64.3
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1343.6 1018 64.1
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1329.7 1013 64.3
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1327.0 1023 63.4
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1326.6 1018 63.5
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1326.2 1025 62.5
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1325.5 1025 63.3
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1325.1 1030 63.4
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1323.9 1014 63.4
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1323.1 1018 63.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1318.1 1040 62.6
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1316.2 1000 64.0
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1316.2 1034 63.0
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1311.2 1028 62.9
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1300.4 1025 62.0
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1290.8 792 78.7
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1289.2 1061 59.8
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1275.8 1108 59.6
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1236.9 1014 59.9
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1192.9 1027 58.0
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1182.5 1020 56.2
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1169.1 1014 59.5
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1119.4 833 65.7
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1115.1 1008 57.9
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 1.2e-309 1066.6 1030 51.8
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 4.3e-304 1048.1 1012 50.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-296 1023.5 1036 53.7
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 9.0e-294 1013.8 1009 50.3
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 8.7e-289 997.3 1053 49.7
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 1.0e-281 973.8 1032 50.9
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 4.3e-280 968.4 826 62.8
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 2.0e-277 959.5 759 62.5
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 1.8e-270 936.4 567 86.4
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.8e-252 875.5 689 63.9
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 6.3e-247 858.2 538 78.6
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 1.3e-231 807.4 917 46.3
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 3.8e-220 769.2 533 69.0
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 3.5e-213 746.1 582 64.1
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 3.1e-209 733.0 493 75.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 4.9e-207 725.7 485 73.2
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 2.6e-200 703.4 943 42.1
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 4.3e-155 553.1 382 69.1
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 2.9e-151 540.4 578 51.2
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 8.2e-122 442.6 585 43.6
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.2e-88 332.4 375 47.5
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 2.8e-85 321.2 410 45.1
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.8e-84 318.5 247 63.2
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 3.9e-79 300.8 235 64.7
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.8e-76 292.0 274 56.2
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.0e-63 249.6 289 45.7
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 4.9e-58 230.7 293 43.7
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 4.2e-49 201.1 234 47.0
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 7.7e-27 127.1 158 46.2
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 2.2e-21 109.0 72 65.3
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.6e-16 92.8 188 36.7
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 5.2e-15 87.8 55 70.9
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 7.4e-14 84.0 68 63.2
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 4.5e-11 74.7 78 53.8
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 5.9e-11 74.3 97 44.3
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.9e-10 72.0 64 59.4
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 3.2e-09 68.6 114 36.8
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 2.0e-06 59.3 45 64.4
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 2.6e-06 58.9 47 68.1


User provided reference genes

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