Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023816 Camellia sinensis var. sinensis HOM05D000545 ORTHO05D043312 6.5e-64 247.3 130 100.0
CSS0042225 Camellia sinensis var. sinensis HOM05D000545 ORTHO05D043312 6.5e-64 247.3 130 100.0
Actinidia16336 Actinidia chinensis HOM05D000545 ORTHO05D000539 5.4e-34 147.9 134 67.2
QL01p004648 Quercus lobata HOM05D000545 ORTHO05D000539 7.1e-26 120.9 137 59.1
Actinidia23975 Actinidia chinensis HOM05D000545 ORTHO05D000539 1.2e-25 120.2 128 60.2
CiPaw.14G118700 Carya illinoinensis HOM05D000545 ORTHO05D000539 1.2e-25 120.2 136 58.1
Atru.chr3.2710 Acer truncatum HOM05D000545 ORTHO05D000539 2.7e-25 119.0 142 54.9
MD11G1192400 Malus domestica HOM05D000545 ORTHO05D000539 3.5e-25 118.6 142 56.3
Cpa.g.sc84.49 Carica papaya HOM05D000545 ORTHO05D000539 7.8e-25 117.5 138 55.1
FAN11G2485 Fragaria x ananassa HOM05D000545 ORTHO05D000539 1.1e-23 113.6 138 57.2
CiPaw.13G160600 Carya illinoinensis HOM05D000545 ORTHO05D000539 4.3e-23 111.7 138 53.6
FvH4_3g28780 Fragaria vesca HOM05D000545 ORTHO05D000539 4.3e-23 111.7 138 56.5
FAN21G0818 Fragaria x ananassa HOM05D000545 ORTHO05D000539 1.2e-22 110.2 138 56.5
FAN25G1345 Fragaria x ananassa HOM05D000545 ORTHO05D000539 1.2e-22 110.2 138 55.8
FAN16G2500 Fragaria x ananassa HOM05D000545 ORTHO05D000539 3.6e-22 108.6 138 55.1
MELO3C014590.2 Cucumis melo HOM05D000545 ORTHO05D000539 8.1e-22 107.5 141 53.2
Lalb_Chr20g0115211 Lupinus albus HOM05D000545 ORTHO05D000539 2.4e-21 105.9 141 52.5
ClCG02G023180 Citrullus lanatus HOM05D000545 ORTHO05D000539 6.8e-21 104.4 140 54.3
CsaV3_6G039350 Cucumis sativus L. HOM05D000545 ORTHO05D000539 1.2e-20 103.6 141 51.8
MD03G1174600 Malus domestica HOM05D000545 ORTHO05D000539 4.4e-20 101.7 142 50.7
Ciclev10015808m.g Citrus clementina HOM05D000545 ORTHO05D000539 1.7e-19 99.8 141 51.1
Haze_23142 Corylus avellana HOM05D000545 ORTHO05D000539 1.7e-19 99.8 137 54.0
Lj6g0002522 Lotus japonicus HOM05D000545 ORTHO05D000539 1.7e-19 99.8 138 50.7
Lalb_Chr18g0050461 Lupinus albus HOM05D000545 ORTHO05D000539 2.2e-19 99.4 140 50.7
Lalb_Chr15g0082541 Lupinus albus HOM05D000545 ORTHO05D000539 8.4e-19 97.4 141 48.2
Ca_14875_v3 Cicer arietinum L. HOM05D000545 ORTHO05D000539 1.4e-18 96.7 133 48.9
Psat5g165120 Pisum sativum HOM05D000545 ORTHO05D000539 1.9e-18 96.3 132 51.5
Phvul.006G062200 Phaseolus vulgaris HOM05D000545 ORTHO05D000539 3.2e-18 95.5 128 51.6
TPR.G14728 Trifolium pratense HOM05D000545 ORTHO05D000539 3.2e-18 95.5 131 51.1
arahy.Tifrunner.gnm1.ann1.14IBSY Arachis hypogaea HOM05D000545 ORTHO05D000539 1.6e-17 93.2 135 49.6
arahy.Tifrunner.gnm1.ann1.P5AXXG Arachis hypogaea HOM05D000545 ORTHO05D000539 1.6e-17 93.2 135 49.6
Thecc.09G234400 Theobroma cacao HOM05D000545 ORTHO05D000539 1.6e-17 93.2 130 51.5
PGR119G0208 Punica granatum HOM05D000545 ORTHO05D000539 2.7e-17 92.4 123 50.4
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 4.6e-17 91.7 146 45.9
vmacro04154 Vaccinium macrocarpon HOM05D000545 ORTHO05D000539 6.0e-17 91.3 86 59.3
VMungo0540G2022 Vigna mungo HOM05D000545 ORTHO05D000539 1.0e-16 90.5 128 50.0
TAR633G2356 Trochodendron aralioides HOM05D000545 ORTHO05D000539 2.3e-16 89.4 147 45.6
PGSC0003DMG400010697 Solanum tuberosum HOM05D000545 ORTHO05D000539 3.0e-16 89.0 113 51.3
Duzib170G0603 Durio zibethinus HOM05D000545 ORTHO05D000539 5.1e-16 88.2 134 50.7
Sed0019798 Sechium edule HOM05D000545 ORTHO05D000539 6.6e-16 87.8 144 47.9
Glyma.14G010000 Glycine max HOM05D000545 ORTHO05D000539 8.7e-16 87.4 136 47.8
Duzib150G0130 Durio zibethinus HOM05D000545 ORTHO05D000539 1.1e-15 87.0 137 47.4
Eucgr.J00764 Eucalyptus grandis HOM05D000545 ORTHO05D000539 1.9e-15 86.3 124 51.6
Manes.06G163900 Manihot esculenta HOM05D000545 ORTHO05D000539 1.9e-15 86.3 142 48.6
Rhsim13G0220900 Rhododendron simsii HOM05D000545 ORTHO05D000539 1.9e-15 86.3 86 57.0
Glyma.18G071000 Glycine max HOM05D000545 ORTHO05D000539 2.5e-15 85.9 128 49.2
Sed0016559 Sechium edule HOM05D000545 ORTHO05D000539 2.5e-15 85.9 141 47.5
Sopen01g004020 Solanum pennellii HOM05D000545 ORTHO05D000539 2.5e-15 85.9 113 50.4
GSVIVG01025252001 Vitis vinifera HOM05D000545 ORTHO05D000539 2.5e-15 85.9 136 44.9
Duzib168G0819 Durio zibethinus HOM05D000545 ORTHO05D000539 4.3e-15 85.1 133 46.6
Medtr3g061510 Medicago truncatula HOM05D000545 ORTHO05D000539 9.6e-15 84.0 128 47.7
Solyc01g008490.4 Solanum lycopersicum HOM05D000545 ORTHO05D000539 9.6e-15 84.0 113 49.6
TAR623G1120 Trochodendron aralioides HOM05D000545 ORTHO05D000539 1.3e-14 83.6 149 43.6
ECA233G1418 Erigeron canadensis HOM05D000545 ORTHO05D000539 1.6e-14 83.2 133 45.1
Manes.14G003100 Manihot esculenta HOM05D000545 ORTHO05D000539 3.6e-14 82.0 146 46.6
Peaxi162Scf00032g00323 Petunia axillaris HOM05D000545 ORTHO05D000539 3.6e-14 82.0 113 47.8
Glyma.02G303800 Glycine max HOM05D000545 ORTHO05D000539 4.8e-14 81.6 135 47.4
Glyma.08G335900 Glycine max HOM05D000545 ORTHO05D000539 2.4e-13 79.3 126 47.6
COL.COLO4_07580 Corchorus olitorius HOM05D000545 ORTHO05D000539 3.1e-13 79.0 104 50.0
Rhsim01G0192000 Rhododendron simsii HOM05D000545 ORTHO05D000539 3.1e-13 79.0 73 63.0
Sed0020104 Sechium edule HOM05D000545 ORTHO05D000539 3.1e-13 79.0 151 43.7
Prupe.4G249900 Prunus persica HOM05D000545 ORTHO05D000539 4.0e-13 78.6 142 43.0
TWI60G0977 Tripterygium wilfordii HOM05D000545 ORTHO05D000539 4.0e-13 78.6 135 45.2
Peaxi162Scf00004g02521 Petunia axillaris HOM05D000545 ORTHO05D000539 6.9e-13 77.8 108 49.1
DCAR_031537 Daucus carota HOM05D000545 ORTHO05D000539 9.0e-13 77.4 119 46.2
Oeu063324.1 Olea europaea HOM05D000545 ORTHO05D000539 9.0e-13 77.4 122 45.1
Potri.001G257600 Populus trichocarpa HOM05D000545 ORTHO05D000539 9.0e-13 77.4 122 44.3
Gohir.A13G216700 Gossypium hirsutum HOM05D000545 ORTHO05D000539 1.2e-12 77.0 85 52.9
MSTRG.12467 Avicennia marina HOM05D000545 ORTHO05D000539 2.6e-12 75.9 122 45.9
DCAR_002074 Daucus carota HOM05D000545 ORTHO05D000539 2.6e-12 75.9 135 43.7
Oeu025871.1 Olea europaea HOM05D000545 ORTHO05D000539 2.6e-12 75.9 120 43.3
TWI34G1873 Tripterygium wilfordii HOM05D000545 ORTHO05D000539 2.6e-12 75.9 130 43.8
Nitab4.5_0001587g0040 Nicotiana tabacum HOM05D000545 ORTHO05D000539 3.4e-12 75.5 111 46.8
Nitab4.5_0002741g0160 Nicotiana tabacum HOM05D000545 ORTHO05D000539 3.4e-12 75.5 111 46.8
RcHm_v2.0_Chr5g0052231 Rosa chinensis HOM05D000545 ORTHO05D000539 3.4e-12 75.5 142 45.1
GSVIVG01032101001 Vitis vinifera HOM05D000545 ORTHO05D000539 3.4e-12 75.5 137 43.8
ATR0332G043 Amborella trichopoda HOM05D000545 ORTHO05D000539 4.4e-12 75.1 141 42.6
Gohir.D13G220300 Gossypium hirsutum HOM05D000545 ORTHO05D000539 5.8e-12 74.7 85 51.8
Gorai.013G251200 Gossypium raimondii HOM05D000545 ORTHO05D000539 5.8e-12 74.7 85 51.8
Nn7g36222 Nelumbo nucifera HOM05D000545 ORTHO05D000539 5.8e-12 74.7 143 44.1
ECA238G1010 Erigeron canadensis HOM05D000545 ORTHO05D000539 7.6e-12 74.3 129 43.4
Phvul.008G283100 Phaseolus vulgaris HOM05D000545 ORTHO05D000539 2.2e-11 72.8 132 41.7
TAR369G0774 Trochodendron aralioides HOM05D000545 ORTHO05D000539 2.9e-11 72.4 151 43.0
VMungo0647G1254 Vigna mungo HOM05D000545 ORTHO05D000539 6.4e-11 71.2 135 44.4
LjContig00081g0010953 Lotus japonicus HOM05D000545 ORTHO05D000539 8.4e-11 70.9 131 43.5
Potri.009G052900 Populus trichocarpa HOM05D000545 ORTHO05D000539 1.1e-10 70.5 142 39.4
HanXRQChr02g0056021 Helianthus annuus HOM05D000545 ORTHO05D000539 1.9e-10 69.7 137 38.7
Aa31LG8G7730 Aethionema arabicum HOM05D000545 ORTHO05D000539 3.2e-10 68.9 131 45.0
Hund22028 Selenicereus undatus HOM05D000545 ORTHO05D000539 5.4e-10 68.2 127 42.5
CARHR096790 Cardamine hirsuta HOM05D000545 ORTHO05D000539 9.3e-10 67.4 127 38.6
MSTRG.21375 Avicennia marina HOM05D000545 ORTHO05D000539 1.2e-09 67.0 122 42.6
CAN.G821.12 Capsicum annuum HOM05D000545 ORTHO05D000539 1.6e-09 66.6 111 42.3
Sp3g18940 Schrenkiella parvula HOM05D000545 ORTHO05D000539 2.7e-09 65.9 130 38.5
BcaB06g26166 Brassica carinata HOM05D000545 ORTHO05D000539 3.5e-09 65.5 127 37.8
C05p43140 Brassica napus HOM05D000545 ORTHO05D000539 3.5e-09 65.5 127 37.8
BolC5t33044H Brassica oleracea HOM05D000545 ORTHO05D000539 3.5e-09 65.5 127 37.8
AT3G20910 Arabidopsis thaliana HOM05D000545 ORTHO05D000539 4.6e-09 65.1 127 39.4
Thhalv10021240m.g Eutrema salsugineum HOM05D000545 ORTHO05D000539 4.6e-09 65.1 128 39.1
MBI04_g36078_MAGBIO Magnolia biondii HOM05D000545 ORTHO05D000539 4.6e-09 65.1 133 40.6
GSVIVG01033313001 Vitis vinifera HOM05D000545 ORTHO05D000539 4.6e-09 65.1 147 39.5
BraA05t21667Z Brassica rapa HOM05D000545 ORTHO05D000539 7.8e-09 64.3 127 37.0
A03p41970 Brassica napus HOM05D000545 ORTHO05D000539 1.0e-08 63.9 127 38.6
A05p27800 Brassica napus HOM05D000545 ORTHO05D000539 1.0e-08 63.9 127 37.0
BraA03t13350Z Brassica rapa HOM05D000545 ORTHO05D000539 1.0e-08 63.9 127 38.6
Carub.0003s2089 Capsella rubella HOM05D000545 ORTHO05D000539 1.3e-08 63.5 127 38.6
Sc09g0000740 Simmondsia chinensis HOM05D000545 ORTHO05D000539 1.3e-08 63.5 133 39.1
PGSC0003DMG400007350 Solanum tuberosum HOM05D000545 ORTHO05D000539 1.3e-08 63.5 111 41.4
Dinv43440 Davidia involucrata HOM05D000545 ORTHO05D000539 3.0e-08 62.4 96 46.9
Lsat_1_v5_gn_6_47121 Lactuca sativa HOM05D000545 ORTHO05D000539 3.0e-08 62.4 133 37.6
BcaB06g26168 Brassica carinata HOM05D000545 ORTHO05D000539 3.9e-08 62.0 127 37.8
BcaC01g03533 Brassica carinata HOM05D000545 ORTHO05D000539 3.9e-08 62.0 128 38.3
BcaC05g28204 Brassica carinata HOM05D000545 ORTHO05D000539 3.9e-08 62.0 127 37.8
AUR62019306 Chenopodium quinoa HOM05D000545 ORTHO05D000539 5.1e-08 61.6 129 42.6
Cc00_g07300 Coffea canephora HOM05D000545 ORTHO05D000539 5.1e-08 61.6 48 68.8
Lsat_1_v5_gn_2_97800 Lactuca sativa HOM05D000545 ORTHO05D000539 5.1e-08 61.6 134 38.8
AL3G34870 Arabidopsis lyrata HOM05D000545 ORTHO05D000539 6.6e-08 61.2 127 37.8
AUR62000125 Chenopodium quinoa HOM05D000545 ORTHO05D000539 6.6e-08 61.2 129 45.0
Migut.D00604 Erythranthe guttata HOM05D000545 ORTHO05D000539 6.6e-08 61.2 73 56.2
HanXRQChr14g0453021 Helianthus annuus HOM05D000545 ORTHO05D000539 8.7e-08 60.8 127 40.9
Solyc11g065700.2 Solanum lycopersicum HOM05D000545 ORTHO05D000539 8.7e-08 60.8 109 41.3
Sopen11g025440 Solanum pennellii HOM05D000545 ORTHO05D000539 8.7e-08 60.8 109 41.3
CAN.G494.5 Capsicum annuum HOM05D000545 ORTHO05D000539 1.1e-07 60.5 111 41.4
HanXRQChr07g0197441 Helianthus annuus HOM05D000545 ORTHO05D000539 1.1e-07 60.5 128 39.8
CANSAT80G1101 Cannabis sativa HOM05D000545 ORTHO05D000539 1.5e-07 60.1 151 39.7
BcaB04g20619 Brassica carinata HOM05D000545 ORTHO05D000539 1.9e-07 59.7 127 37.0
C03p51380 Brassica napus HOM05D000545 ORTHO05D000539 2.5e-07 59.3 128 37.5
BolC3t17424H Brassica oleracea HOM05D000545 ORTHO05D000539 2.5e-07 59.3 128 37.5
THA.LOC104799107 Tarenaya hassleriana HOM05D000545 ORTHO05D000539 2.5e-07 59.3 69 52.2
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 4.3e-07 58.5 69 55.1
EL10Ac4g10245 Beta vulgaris HOM05D000545 ORTHO05D000539 4.3e-07 58.5 129 43.4
BcaB08g37015 Brassica carinata HOM05D000545 ORTHO05D000539 4.3e-07 58.5 66 47.0
A01p33880 Brassica napus HOM05D000545 ORTHO05D000539 4.3e-07 58.5 127 36.2
MSTRG.18429 Avicennia marina HOM05D000545 ORTHO05D000539 5.6e-07 58.2 59 59.3
Atru.chr1.1054 Acer truncatum HOM05D000545 ORTHO05D000539 7.3e-07 57.8 128 39.8
Aqoxy2G00195 Aquilegia oxysepala HOM05D000545 ORTHO05D000539 7.3e-07 57.8 140 39.3
A10p25320 Brassica napus HOM05D000059 ORTHO05D000539 7.3e-07 57.8 70 51.4
Oeu016681.2 Olea europaea HOM05D000545 ORTHO05D000539 7.3e-07 57.8 35 77.1
Aa31LG3G14760 Aethionema arabicum HOM05D000545 ORTHO05D000539 9.6e-07 57.4 68 51.5
unitig_90.g27473 Utricularia gibba HOM05D000545 ORTHO05D000539 9.6e-07 57.4 47 66.0
BraA10t44594Z Brassica rapa HOM05D000545 ORTHO05D000539 1.3e-06 57.0 67 52.2
CARHR200610 Cardamine hirsuta HOM05D000545 ORTHO05D000539 1.3e-06 57.0 66 51.5
Oeu015662.1 Olea europaea HOM05D000545 ORTHO05D000539 1.3e-06 57.0 45 68.9
THA.LOC104811169 Tarenaya hassleriana HOM05D000545 ORTHO05D000539 1.3e-06 57.0 69 53.6
Ah.06g194150 Amaranthus hybridus HOM05D000545 ORTHO05D000539 2.1e-06 56.2 129 38.8
SGA_v2.0_scaffold247G44882 Striga asiatica HOM05D000545 ORTHO05D000539 2.1e-06 56.2 42 71.4
Nitab4.5_0000023g0710 Nicotiana tabacum HOM05D000545 ORTHO05D000539 2.8e-06 55.8 41 70.7
Nitab4.5_0005476g0020 Nicotiana tabacum HOM05D000545 ORTHO05D000539 2.8e-06 55.8 109 42.2
Atru.chr11.2622 Acer truncatum HOM05D000545 ORTHO05D000539 3.6e-06 55.5 139 40.3
BolC3t13167H Brassica oleracea HOM05D000545 ORTHO05D000539 3.6e-06 55.5 69 50.7
Hma1.2p1_0184F.1_g081170 Hydrangea macrophylla HOM05D000545 ORTHO05D000539 3.6e-06 55.5 54 61.1
Lj7A571T38 Lonicera japonica HOM05D000545 ORTHO05D000539 3.6e-06 55.5 114 43.9
Manes.07G006600 Manihot esculenta HOM05D000545 ORTHO05D000539 3.6e-06 55.5 74 54.1
Peaxi162Scf00953g00217 Petunia axillaris HOM05D000545 ORTHO05D000539 3.6e-06 55.5 80 48.8
Actinidia31069 Actinidia chinensis HOM05D000545 ORTHO05D000539 4.8e-06 55.1 129 38.0
Cc02_g28060 Coffea canephora HOM05D000545 ORTHO05D000539 6.2e-06 54.7 91 46.2
Migut.N02320 Erythranthe guttata HOM05D000545 ORTHO05D000539 6.2e-06 54.7 67 47.8
SGA_v2.0_scaffold3G01501 Striga asiatica HOM05D000545 ORTHO05D000539 6.2e-06 54.7 68 51.5
C09p64330 Brassica napus HOM05D000059 ORTHO05D000539 8.1e-06 54.3 71 49.3
Thhalv10014364m.g Eutrema salsugineum HOM05D000545 ORTHO05D000539 8.1e-06 54.3 66 50.0
Hund07505 Selenicereus undatus HOM05D000545 ORTHO05D000539 8.1e-06 54.3 128 38.3
SGA_v2.0_scaffold3G01499 Striga asiatica HOM05D000545 ORTHO05D000539 8.1e-06 54.3 59 55.9


User provided reference genes

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