Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.5e-54 213.4 106 100.0
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-43 178.3 97 90.7
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.0e-38 163.3 97 80.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.5e-37 159.5 97 80.4
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-34 149.8 106 76.4
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.2e-33 145.6 98 74.5
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.2e-32 141.7 100 68.0
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.7e-30 136.0 98 70.4
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 3.0e-30 135.2 98 69.4
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.1e-29 133.3 97 72.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.1e-29 133.3 101 68.3
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 8.0e-28 127.1 98 68.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.8e-27 125.9 98 65.3
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-27 124.8 98 65.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-27 124.8 98 65.3
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 4.0e-27 124.8 98 64.3
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 8.9e-27 123.6 98 68.4
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.5e-26 122.9 98 65.3
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.0e-26 122.5 98 67.3
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.6e-26 122.1 98 63.3
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 4.4e-26 121.3 98 62.2
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.4e-26 121.3 98 64.3
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.4e-26 121.3 98 64.3
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.8e-26 120.9 98 64.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 5.8e-26 120.9 101 61.4
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 5.8e-26 120.9 98 63.3
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 1.3e-25 119.8 98 60.2
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.3e-25 119.8 98 62.2
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.2e-25 119.0 98 61.2
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 3.7e-25 118.2 98 61.2
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.9e-25 117.9 98 62.2
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.9e-25 117.9 98 62.2
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 4.9e-25 117.9 98 62.2
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 6.4e-25 117.5 98 62.2
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 6.4e-25 117.5 98 59.2
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 8.3e-25 117.1 98 64.3
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-24 116.7 98 64.3
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-24 116.3 98 64.3
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.9e-24 115.9 98 62.2
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.9e-24 115.9 98 64.3
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.4e-24 115.5 98 59.2
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 3.2e-24 115.2 98 64.3
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 3.2e-24 115.2 98 63.3
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 3.2e-24 115.2 98 63.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 5.4e-24 114.4 98 63.3
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.0e-24 114.0 98 61.2
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 7.0e-24 114.0 98 60.2
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 7.0e-24 114.0 98 61.2
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 9.2e-24 113.6 94 60.6
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.2e-23 113.2 98 60.2
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.6e-23 112.8 101 58.4
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.6e-23 112.8 98 63.3
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 1.6e-23 112.8 98 60.2
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.0e-23 112.5 76 69.7
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.0e-23 112.5 98 59.2
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 2.7e-23 112.1 98 60.2
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.7e-23 112.1 98 61.2
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 4.6e-23 111.3 98 61.2
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.6e-23 111.3 98 57.1
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 4.6e-23 111.3 98 62.2
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.6e-23 111.3 98 59.2
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 6.0e-23 110.9 98 59.2
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.0e-23 110.9 98 59.2
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 6.0e-23 110.9 98 60.2
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 6.0e-23 110.9 98 58.2
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.0e-22 110.2 98 60.2
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.0e-22 110.2 98 61.2
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 1.3e-22 109.8 98 59.2
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.3e-22 109.8 97 59.8
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.7e-22 109.4 98 58.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.3e-22 109.0 98 58.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 2.3e-22 109.0 98 59.2
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.3e-22 109.0 100 61.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 3.0e-22 108.6 98 59.2
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.0e-22 108.6 98 58.2
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 3.0e-22 108.6 101 56.4
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 3.0e-22 108.6 98 61.2
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 3.9e-22 108.2 98 59.2
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 5.0e-22 107.8 98 55.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 8.6e-22 107.1 98 58.2
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.6e-22 107.1 98 57.1
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-21 106.7 98 57.1
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-21 106.7 98 57.1
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.1e-21 106.7 98 57.1
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.1e-21 106.7 101 54.5
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.5e-21 106.3 98 58.2
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 3.3e-21 105.1 98 58.2
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 3.3e-21 105.1 98 53.1
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 3.3e-21 105.1 98 60.2
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.3e-21 104.8 98 57.1
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 5.6e-21 104.4 94 55.3
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.2e-20 103.2 100 55.0
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.6e-20 102.8 101 53.5
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.6e-20 102.8 94 56.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.1e-20 102.4 98 54.1
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 8.1e-20 100.5 98 53.1
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-19 100.1 98 52.0
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 4.0e-19 98.2 98 51.0
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 4.0e-19 98.2 98 54.1
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 6.8e-19 97.4 98 52.0
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 1.5e-18 96.3 98 54.1
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.6e-18 95.5 98 50.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 2.6e-18 95.5 98 52.0
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.4e-18 95.1 97 55.7
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 4.4e-18 94.7 70 61.4
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 7.5e-18 94.0 99 53.5
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 7.5e-18 94.0 101 48.5
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 9.8e-18 93.6 98 50.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.2e-17 92.4 98 50.0
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.9e-17 92.0 98 53.1
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.9e-17 92.0 97 54.6
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.7e-17 91.7 101 50.5
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.7e-17 91.7 97 50.5
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 4.9e-17 91.3 101 47.5
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 3.2e-16 88.6 97 51.5
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.1e-16 88.2 99 51.5
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 5.4e-16 87.8 101 50.5
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 9.2e-16 87.0 100 52.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 2.7e-15 85.5 75 57.3
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 3.5e-15 85.1 97 51.5
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.0e-15 84.3 98 48.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.8e-15 84.0 98 45.9
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 7.8e-15 84.0 109 44.0
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-14 82.4 98 46.9
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 5.1e-14 81.3 111 48.6
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 5.6e-13 77.8 97 45.4
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 5.6e-13 77.8 97 45.4
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.1e-11 73.6 99 45.5
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 3.1e-11 72.0 104 43.3
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.7e-09 66.2 59 62.7
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.4e-09 63.9 35 85.7
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 4.1e-08 61.6 69 49.3
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 5.1e-06 54.7 86 39.5
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.1e-06 54.7 55 54.5


User provided reference genes

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