Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023422 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D043355 1.2e-85 319.7 154 100.0
CSS0037880 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D043355 5.4e-49 198.0 108 88.9
PGR031G3659 Punica granatum HOM05D000524 ORTHO05D000381 5.1e-31 138.3 70 88.6
Cfa001832 Carpinus fangiana HOM05D000524 ORTHO05D000381 1.5e-30 136.7 134 56.0
Actinidia12697 Actinidia chinensis HOM05D000524 ORTHO05D000381 1.9e-30 136.3 70 90.0
Hma1.2p1_0532F.1_g173450 Hydrangea macrophylla HOM05D000524 ORTHO05D000381 1.9e-30 136.3 70 91.4
CSS0031331 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D000381 3.3e-30 135.6 70 91.4
Dinv43733 Davidia involucrata HOM05D000016 ORTHO05D000109 3.3e-30 135.6 70 90.0
Cpa.g.sc18.154 Carica papaya HOM05D000524 ORTHO05D000381 4.3e-30 135.2 70 88.6
vmacro20992 Vaccinium macrocarpon HOM05D000524 ORTHO05D000381 4.3e-30 135.2 70 90.0
Prupe.2G149400 Prunus persica HOM05D000524 ORTHO05D000381 5.6e-30 134.8 70 88.6
Rhsim01G0160900 Rhododendron simsii HOM05D000524 ORTHO05D000381 5.6e-30 134.8 70 88.6
Lj7C525G14 Lonicera japonica HOM05D000524 ORTHO05D000381 7.3e-30 134.4 70 90.0
MD02G1198800 Malus domestica HOM05D000524 ORTHO05D000381 7.3e-30 134.4 70 88.6
CiPaw.01G259600 Carya illinoinensis HOM05D000524 ORTHO05D000381 9.6e-30 134.0 134 56.0
Ciclev10019763m.g Citrus clementina HOM05D000524 ORTHO05D000381 1.6e-29 133.3 134 56.7
FvH4_7g12480 Fragaria vesca HOM05D000524 ORTHO05D000381 2.1e-29 132.9 70 88.6
FAN01G1690 Fragaria x ananassa HOM05D000524 ORTHO05D000381 2.1e-29 132.9 70 88.6
FAN03G1734 Fragaria x ananassa HOM05D000524 ORTHO05D000381 2.1e-29 132.9 70 88.6
FAN06G1673 Fragaria x ananassa HOM05D000524 ORTHO05D000381 2.1e-29 132.9 70 88.6
FAN06G3228 Fragaria x ananassa HOM05D000524 ORTHO05D000381 2.1e-29 132.9 70 88.6
FAN10G0183 Fragaria x ananassa HOM05D000524 ORTHO05D000381 2.1e-29 132.9 70 88.6
FAN10G3008 Fragaria x ananassa HOM05D000524 ORTHO05D000381 2.1e-29 132.9 70 88.6
RcHm_v2.0_Chr1g0351321 Rosa chinensis HOM05D000524 ORTHO05D000381 2.8e-29 132.5 70 87.1
ECA234G0201 Erigeron canadensis HOM05D000524 ORTHO05D000381 3.6e-29 132.1 70 85.7
Manes.05G043200 Manihot esculenta HOM05D000524 ORTHO05D000381 3.6e-29 132.1 70 84.3
Potri.014G072800 Populus trichocarpa HOM05D000524 ORTHO05D000381 3.6e-29 132.1 70 85.7
QL08p051581 Quercus lobata HOM05D000524 ORTHO05D000381 3.6e-29 132.1 70 85.7
TWI23G0338 Tripterygium wilfordii HOM05D000524 ORTHO05D000381 3.6e-29 132.1 70 87.1
TWI59G1172 Tripterygium wilfordii HOM05D000524 ORTHO05D000381 3.6e-29 132.1 70 87.1
Atru.chr5.357 Acer truncatum HOM05D000524 ORTHO05D000381 4.7e-29 131.7 70 87.1
COL.COLO4_12588 Corchorus olitorius HOM05D000524 ORTHO05D000381 4.7e-29 131.7 70 87.1
Eucgr.D02433 Eucalyptus grandis HOM05D000524 ORTHO05D000381 4.7e-29 131.7 70 85.7
Lsat_1_v5_gn_4_37541 Lactuca sativa HOM05D000524 ORTHO05D000381 4.7e-29 131.7 99 66.7
Nn6g34345 Nelumbo nucifera HOM05D000524 ORTHO05D000381 4.7e-29 131.7 70 87.1
CiPaw.02G165300 Carya illinoinensis HOM05D000524 ORTHO05D000381 8.1e-29 131.0 134 54.5
Potri.002G150700 Populus trichocarpa HOM05D000524 ORTHO05D000381 8.1e-29 131.0 70 82.9
Gohir.A11G083000 Gossypium hirsutum HOM05D000524 ORTHO05D000381 1.1e-28 130.6 70 84.3
ClCG06G000270 Citrullus lanatus HOM05D000524 ORTHO05D000381 1.4e-28 130.2 70 82.9
MELO3C022511.2 Cucumis melo HOM05D000524 ORTHO05D000381 1.4e-28 130.2 70 82.9
CsaV3_6G006060 Cucumis sativus L. HOM05D000524 ORTHO05D000381 1.4e-28 130.2 70 82.9
Thecc.01G372800 Theobroma cacao HOM05D000524 ORTHO05D000381 1.4e-28 130.2 70 85.7
Sabra02G0119100 Salix brachista HOM05D000524 ORTHO05D000381 1.8e-28 129.8 70 81.4
CANSAT56G0399 Cannabis sativa HOM05D000524 ORTHO05D000381 2.4e-28 129.4 70 88.6
Gorai.004G042700 Gossypium raimondii HOM05D000524 ORTHO05D000381 3.1e-28 129.0 70 80.0
Gohir.A08G033300 Gossypium hirsutum HOM05D000524 ORTHO05D000381 4.0e-28 128.6 70 80.0
Oeu059208.1 Olea europaea HOM05D000524 ORTHO05D000381 4.0e-28 128.6 70 84.3
Duzib133G0787 Durio zibethinus HOM05D000524 ORTHO05D000381 5.2e-28 128.3 70 82.9
Duzib268G0215 Durio zibethinus HOM05D000524 ORTHO05D000381 5.2e-28 128.3 70 82.9
Gohir.D11G087100 Gossypium hirsutum HOM05D000524 ORTHO05D000381 5.2e-28 128.3 70 82.9
Gorai.007G093000 Gossypium raimondii HOM05D000524 ORTHO05D000381 5.2e-28 128.3 70 82.9
Sed0014593 Sechium edule HOM05D000524 ORTHO05D000381 5.2e-28 128.3 70 78.6
Duzib138G0869 Durio zibethinus HOM05D000524 ORTHO05D000381 8.9e-28 127.5 70 80.0
Manes.01G264400 Manihot esculenta HOM05D000524 ORTHO05D000381 8.9e-28 127.5 70 84.3
TAR375G0596 Trochodendron aralioides HOM05D000524 ORTHO05D000381 8.9e-28 127.5 69 85.5
Oeu026238.1 Olea europaea HOM05D000524 ORTHO05D000381 1.2e-27 127.1 69 84.1
Nitab4.5_0006009g0010 Nicotiana tabacum HOM05D000524 ORTHO05D000381 1.5e-27 126.7 70 82.9
Nitab4.5_0002436g0060 Nicotiana tabacum HOM05D000524 ORTHO05D000381 2.6e-27 125.9 70 80.0
TAR374G0207 Trochodendron aralioides HOM05D000524 ORTHO05D000381 2.6e-27 125.9 70 82.9
Ca_23820_v3 Cicer arietinum L. HOM05D000524 ORTHO05D000381 3.4e-27 125.6 70 81.4
Nitab4.5_0005340g0040 Nicotiana tabacum HOM05D000524 ORTHO05D000381 3.4e-27 125.6 70 78.6
Phvul.008G074100 Phaseolus vulgaris HOM05D000524 ORTHO05D000381 3.4e-27 125.6 70 82.9
Lalb_Chr13g0291631 Lupinus albus HOM05D000524 ORTHO05D000381 4.4e-27 125.2 70 82.9
Peaxi162Scf00008g01717 Petunia axillaris HOM05D000524 ORTHO05D000381 4.4e-27 125.2 70 81.4
Glyma.03G020800 Glycine max HOM05D000524 ORTHO05D000381 5.8e-27 124.8 70 82.9
Gohir.D08G044000 Gossypium hirsutum HOM05D000524 ORTHO05D000381 5.8e-27 124.8 70 77.1
HanXRQChr16g0523451 Helianthus annuus HOM05D000524 ORTHO05D000381 5.8e-27 124.8 99 64.6
MSTRG.28196 Avicennia marina HOM05D000524 ORTHO05D000381 7.6e-27 124.4 70 81.4
Nitab4.5_0000386g0230 Nicotiana tabacum HOM05D000524 ORTHO05D000381 7.6e-27 124.4 70 81.4
Sed0019006 Sechium edule HOM05D000524 ORTHO05D000381 7.6e-27 124.4 70 75.7
Lalb_Chr01g0021251 Lupinus albus HOM05D000524 ORTHO05D000381 9.9e-27 124.0 70 80.0
Glyma.07G082700 Glycine max HOM05D000524 ORTHO05D000381 1.3e-26 123.6 70 81.4
Lj1g0003269 Lotus japonicus HOM05D000524 ORTHO05D000381 1.3e-26 123.6 70 78.6
Medtr8g035590 Medicago truncatula HOM05D000524 ORTHO05D000381 1.3e-26 123.6 70 81.4
Nitab4.5_0010110g0060 Nicotiana tabacum HOM05D000524 ORTHO05D000381 1.3e-26 123.6 69 78.3
Psat4g150200 Pisum sativum HOM05D000524 ORTHO05D000381 1.3e-26 123.6 70 82.9
THA.LOC104802000 Tarenaya hassleriana HOM05D000524 ORTHO05D000381 1.7e-26 123.2 70 78.6
Aqoxy7G00523 Aquilegia oxysepala HOM05D000524 ORTHO05D000381 2.2e-26 122.9 70 78.6
arahy.Tifrunner.gnm1.ann1.I40MZ1 Arachis hypogaea HOM05D000524 ORTHO05D000381 2.2e-26 122.9 70 77.1
arahy.Tifrunner.gnm1.ann1.VW6V95 Arachis hypogaea HOM05D000524 ORTHO05D000381 2.2e-26 122.9 70 77.1
Nn1g01152 Nelumbo nucifera HOM05D000524 ORTHO05D000381 2.2e-26 122.9 70 80.0
Glyma.18G224000 Glycine max HOM05D000524 ORTHO05D000381 2.9e-26 122.5 134 53.0
Lalb_Chr07g0189551 Lupinus albus HOM05D000524 ORTHO05D000381 2.9e-26 122.5 70 80.0
THA.LOC104827619 Tarenaya hassleriana HOM05D000524 ORTHO05D000381 2.9e-26 122.5 70 80.0
Glyma.09G266600 Glycine max HOM05D000524 ORTHO05D000381 3.8e-26 122.1 134 52.2
Lj3g0026342 Lotus japonicus HOM05D000524 ORTHO05D000381 3.8e-26 122.1 70 80.0
Nitab4.5_0001702g0220 Nicotiana tabacum HOM05D000524 ORTHO05D000381 3.8e-26 122.1 69 75.4
Phvul.010G086200 Phaseolus vulgaris HOM05D000524 ORTHO05D000381 3.8e-26 122.1 70 78.6
unitig_8.g3390 Utricularia gibba HOM05D000524 ORTHO05D000381 8.4e-26 120.9 70 77.1
TPR.G30884 Trifolium pratense HOM05D000524 ORTHO05D000381 1.4e-25 120.2 70 80.0
VMungo0331G0034 Vigna mungo HOM05D000524 ORTHO05D000381 1.4e-25 120.2 70 80.0
ATR0661G484 Amborella trichopoda HOM05D000524 ORTHO05D000381 1.9e-25 119.8 70 72.9
Medtr7g075790 Medicago truncatula HOM05D000524 ORTHO05D000381 1.9e-25 119.8 70 77.1
Solyc01g094030.3 Solanum lycopersicum HOM05D000524 ORTHO05D000381 1.9e-25 119.8 70 77.1
Sopen01g037850 Solanum pennellii HOM05D000524 ORTHO05D000381 1.9e-25 119.8 70 77.1
Carub.0005s2770 Capsella rubella HOM05D000524 ORTHO05D000381 5.4e-25 118.2 70 75.7
arahy.Tifrunner.gnm1.ann1.68WCMC Arachis hypogaea HOM05D000524 ORTHO05D000381 9.3e-25 117.5 134 50.7
arahy.Tifrunner.gnm1.ann1.Z84XTW Arachis hypogaea HOM05D000524 ORTHO05D000381 9.3e-25 117.5 134 50.7
Gohir.A12G102500 Gossypium hirsutum HOM05D000524 ORTHO05D000381 9.3e-25 117.5 69 76.8
Gohir.D12G105700 Gossypium hirsutum HOM05D000524 ORTHO05D000381 9.3e-25 117.5 69 76.8
Gorai.008G115000 Gossypium raimondii HOM05D000524 ORTHO05D000381 9.3e-25 117.5 69 76.8
CDE04G3181 Ceratophyllum demersum HOM05D000524 ORTHO05D000381 1.6e-24 116.7 70 74.3
ECA240G0665 Erigeron canadensis HOM05D000524 ORTHO05D000381 2.1e-24 116.3 70 71.4
HanXRQChr13g0425551 Helianthus annuus HOM05D000524 ORTHO05D000381 2.1e-24 116.3 70 71.4
HanXRQChr17g0557101 Helianthus annuus HOM05D000524 ORTHO05D000381 2.1e-24 116.3 70 75.7
Aa31LG1G27070 Aethionema arabicum HOM05D000524 ORTHO05D000381 2.7e-24 115.9 70 72.9
A07p25280 Brassica napus HOM05D000524 ORTHO05D000381 2.7e-24 115.9 70 75.7
BraA07t30170Z Brassica rapa HOM05D000524 ORTHO05D000381 2.7e-24 115.9 70 75.7
Migut.B01660 Erythranthe guttata HOM05D000524 ORTHO05D000381 2.7e-24 115.9 70 74.3
CAN.G1561.14 Capsicum annuum HOM05D000524 ORTHO05D000381 3.5e-24 115.5 70 74.3
Lsat_1_v5_gn_3_135441 Lactuca sativa HOM05D000524 ORTHO05D000381 3.5e-24 115.5 70 71.4
Eucgr.E01350 Eucalyptus grandis HOM05D000524 ORTHO05D000381 4.6e-24 115.2 69 76.8
Hund16978 Selenicereus undatus HOM05D000524 ORTHO05D000381 6.0e-24 114.8 70 70.0
Zm00001eb305750 Zea mays HOM05D000524 ORTHO05D000381 6.0e-24 114.8 70 74.3
BcaC08g45096 Brassica carinata HOM05D000524 ORTHO05D000381 7.8e-24 114.4 70 72.9
C06p27040 Brassica napus HOM05D000524 ORTHO05D000381 7.8e-24 114.4 70 72.9
BolC6t37876H Brassica oleracea HOM05D000524 ORTHO05D000381 7.8e-24 114.4 70 72.9
SalBow5G0959 Salvia bowleyana HOM05D000524 ORTHO05D000381 7.8e-24 114.4 70 72.9
SalBow5G2307 Salvia bowleyana HOM05D000524 ORTHO05D000381 7.8e-24 114.4 70 72.9
HPP92_022483 Vanilla planifolia HOM05D000524 ORTHO05D000381 7.8e-24 114.4 70 71.4
AT3G61050 Arabidopsis thaliana HOM05D000524 ORTHO05D000381 1.0e-23 114.0 70 75.7
PGSC0003DMG400010278 Solanum tuberosum HOM05D000524 ORTHO05D000381 1.0e-23 114.0 62 80.6
Aa31LG10G15150 Aethionema arabicum HOM05D000524 ORTHO05D000381 1.3e-23 113.6 70 72.9
HPP92_014621 Vanilla planifolia HOM05D000524 ORTHO05D000381 1.3e-23 113.6 70 74.3
Psat0ss4236g0200 Pisum sativum HOM05D000524 ORTHO05D000381 1.7e-23 113.2 70 75.7
Migut.N01584 Erythranthe guttata HOM05D000524 ORTHO05D000381 3.9e-23 112.1 70 72.9
PSO478G1135 Papaver somniferum HOM05D000524 ORTHO05D000381 3.9e-23 112.1 70 72.9
PSO782G5300 Papaver somniferum HOM05D000524 ORTHO05D000381 3.9e-23 112.1 70 72.9
SGA_v2.0_scaffold153G37045 Striga asiatica HOM05D000524 ORTHO05D000381 5.1e-23 111.7 70 70.0
unitig_26.g9316 Utricularia gibba HOM05D000524 ORTHO05D000381 5.1e-23 111.7 70 71.4
CARHR171360 Cardamine hirsuta HOM05D000524 ORTHO05D000381 6.6e-23 111.3 70 72.9
AUR62004254 Chenopodium quinoa HOM05D000524 ORTHO05D000381 6.6e-23 111.3 70 71.4
Os07g0409100 Oryza sativa ssp. japonica HOM05D000524 ORTHO05D000381 6.6e-23 111.3 70 71.4
BcaB02g07392 Brassica carinata HOM05D000524 ORTHO05D000381 1.5e-22 110.2 70 71.4
TPR.G37853 Trifolium pratense HOM05D000524 ORTHO05D000381 1.5e-22 110.2 70 72.9
Ah.05g175480 Amaranthus hybridus HOM05D000524 ORTHO05D000381 1.9e-22 109.8 102 54.9
PSO782G3898 Papaver somniferum HOM05D000524 ORTHO05D000381 1.9e-22 109.8 70 70.0
Sc02g0002390 Simmondsia chinensis HOM05D000524 ORTHO05D000381 3.3e-22 109.0 70 71.4
Solyc10g017590.3 Solanum lycopersicum HOM05D000524 ORTHO05D000381 3.3e-22 109.0 59 78.0
Dinv32399 Davidia involucrata HOM05D000524 ORTHO05D000381 4.3e-22 108.6 53 90.6
Thhalv10005905m.g Eutrema salsugineum HOM05D000524 ORTHO05D000381 4.3e-22 108.6 70 71.4
MSTRG.20771 Avicennia marina HOM05D000524 ORTHO05D000381 5.6e-22 108.2 70 67.1
C04p31650 Brassica napus HOM05D000524 ORTHO05D000381 1.3e-21 107.1 70 71.4
BolC4t24712H Brassica oleracea HOM05D000524 ORTHO05D000381 1.3e-21 107.1 70 71.4
Sp5g02310 Schrenkiella parvula HOM05D000524 ORTHO05D000381 1.3e-21 107.1 70 70.0
PGR042G2092 Punica granatum HOM05D000524 ORTHO05D000381 1.6e-21 106.7 69 69.6
PGR042G3813 Punica granatum HOM05D000524 ORTHO05D000381 1.6e-21 106.7 69 69.6
EL10Ac1g00919 Beta vulgaris HOM05D000524 ORTHO05D000381 2.8e-21 105.9 70 67.1
BcaC02g10201 Brassica carinata HOM05D000524 ORTHO05D000381 3.6e-21 105.5 70 71.4
A04p01300 Brassica napus HOM05D000524 ORTHO05D000381 3.6e-21 105.5 70 71.4
BraA04t15849Z Brassica rapa HOM05D000524 ORTHO05D000381 3.6e-21 105.5 70 71.4
Sopen05g027960 Solanum pennellii HOM05D000524 ORTHO05D000381 8.1e-21 104.4 70 64.3
VMungo1383G0814 Vigna mungo HOM05D000524 ORTHO05D000381 8.1e-21 104.4 105 52.4
Cc02_g36370 Coffea canephora HOM05D000524 ORTHO05D000381 2.4e-20 102.8 53 84.9
GSVIVG01027563001 Vitis vinifera HOM05D000524 ORTHO05D000381 3.1e-20 102.4 53 84.9
Solyc05g047710.3 Solanum lycopersicum HOM05D000524 ORTHO05D000381 4.0e-20 102.1 70 64.3
SGA_v2.0_scaffold95G28885 Striga asiatica HOM05D000524 ORTHO05D000381 6.9e-20 101.3 70 68.6
SHI13498 Sapria himalayana HOM05D000524 ORTHO05D000381 2.6e-19 99.4 70 68.6
unitig_749.g14364 Utricularia gibba HOM05D000524 ORTHO05D000381 1.3e-18 97.1 99 50.5
SGA_v2.0_scaffold43G16462 Striga asiatica HOM05D000524 ORTHO05D000381 2.2e-18 96.3 70 64.3
Peaxi162Scf00988g00321 Petunia axillaris HOM05D000524 ORTHO05D000381 4.9e-18 95.1 70 64.3
AUR62042744 Chenopodium quinoa HOM05D000524 ORTHO05D000381 2.7e-16 89.4 116 43.1
Zm00001eb010800 Zea mays HOM05D000524 ORTHO05D000381 1.7e-15 86.7 70 57.1
SMO143G0196 Selaginella moellendorffii HOM05D000524 ORTHO05D000381 1.1e-14 84.0 70 54.3
Mapoly0022s0057 Marchantia polymorpha HOM05D000524 ORTHO05D000381 1.9e-14 83.2 70 52.9
SalBow7G2428 Salvia bowleyana HOM05D000524 ORTHO05D000381 4.3e-14 82.0 99 45.5
Nitab4.5_0004205g0040 Nicotiana tabacum HOM05D000524 ORTHO05D005537 9.6e-14 80.9 69 58.0
Nitab4.5_0012973g0020 Nicotiana tabacum HOM05D000524 ORTHO05D000381 2.1e-13 79.7 64 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1047 Anthoceros agrestis HOM05D000524 ORTHO05D000381 4.8e-13 78.6 70 50.0
Sabra14G0052000 Salix brachista HOM05D000524 ORTHO05D000381 4.0e-12 75.5 68 57.4
DCAR_006884 Daucus carota HOM05D000524 ORTHO05D000381 2.6e-11 72.8 35 88.6
Actinidia33455 Actinidia chinensis HOM05D003158 ORTHO05D003560 9.9e-11 70.9 35 94.3
CAN.G910.2 Capsicum annuum HOM05D000524 ORTHO05D000381 1.1e-09 67.4 35 77.1
Ca_07840_v3 Cicer arietinum L. HOM05D000524 ORTHO05D000381 1.1e-09 67.4 35 77.1
Pp3c24_10990 Physcomitrium patens HOM05D000524 ORTHO05D000381 4.2e-09 65.5 69 42.0
CiPaw.01G043400 Carya illinoinensis HOM05D000524 ORTHO05D000381 7.1e-09 64.7 48 66.7
Mapoly0022s0062 Marchantia polymorpha HOM05D000524 ORTHO05D000381 9.3e-09 64.3 70 41.4
Sopen10g006510 Solanum pennellii HOM05D000524 ORTHO05D000381 6.7e-07 58.2 29 79.3
Actinidia33454 Actinidia chinensis HOM05D000524 ORTHO05D000381 8.7e-07 57.8 26 88.5
Os03g0251600 Oryza sativa ssp. japonica HOM05D000524 ORTHO05D000381 1.9e-06 56.6 75 38.7
Pp3c8_11720 Physcomitrium patens HOM05D000524 ORTHO05D000381 3.3e-06 55.8 69 34.8
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 5.6e-06 55.1 67 44.8
AT3G60950 Arabidopsis thaliana HOM05D000524 ORTHO05D000381 9.6e-06 54.3 35 68.6
AT3G61030 Arabidopsis thaliana HOM05D000524 ORTHO05D000381 9.6e-06 54.3 35 68.6


User provided reference genes

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