Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023347 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 3.4e-53 211.8 146 100.0
CSS0031879 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.3e-44 183.3 148 73.0
CSS0019694 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 6.9e-38 161.0 170 66.5
vmacro13908 Vaccinium macrocarpon HOM05D004154 ORTHO05D004988 2.3e-33 146.0 159 65.4
CSS0027886 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 3.9e-33 145.2 167 59.3
Rhsim07G0083500 Rhododendron simsii HOM05D004154 ORTHO05D004988 8.8e-33 144.1 162 58.0
CSS0026293 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 3.1e-30 135.6 161 61.5
Cfa012835 Carpinus fangiana HOM05D004154 ORTHO05D004988 4.1e-30 135.2 161 57.1
FAN08G1247 Fragaria x ananassa HOM05D004154 ORTHO05D004988 2.0e-29 132.9 161 57.8
Nn3g19070 Nelumbo nucifera HOM05D004154 ORTHO05D004988 2.0e-29 132.9 163 61.3
Cc08_g15820 Coffea canephora HOM05D004154 ORTHO05D004988 3.4e-29 132.1 157 65.6
Gorai.007G025500 Gossypium raimondii HOM05D004154 ORTHO05D004988 4.5e-29 131.7 158 62.7
Manes.02G012100 Manihot esculenta HOM05D004154 ORTHO05D004988 5.9e-29 131.3 159 60.4
RcHm_v2.0_Chr7g0195371 Rosa chinensis HOM05D004154 ORTHO05D004988 5.9e-29 131.3 161 59.6
MSTRG.25659 Avicennia marina HOM05D004154 ORTHO05D004988 1.0e-28 130.6 163 63.2
Duzib068G1416 Durio zibethinus HOM05D004154 ORTHO05D004988 1.0e-28 130.6 160 62.5
Potri.001G093700 Populus trichocarpa HOM05D004154 ORTHO05D004988 1.7e-28 129.8 159 54.7
Sabra01G0069600 Salix brachista HOM05D004154 ORTHO05D004988 1.7e-28 129.8 159 51.6
Gohir.D11G023700 Gossypium hirsutum HOM05D004154 ORTHO05D004988 2.2e-28 129.4 158 62.0
Potri.003G138000 Populus trichocarpa HOM05D004154 ORTHO05D004988 5.0e-28 128.3 159 51.6
QL02p031322 Quercus lobata HOM05D004154 ORTHO05D004988 5.0e-28 128.3 164 58.5
CiPaw.11G123500 Carya illinoinensis HOM05D004154 ORTHO05D004988 8.5e-28 127.5 164 62.2
SalBow1G2286 Salvia bowleyana HOM05D004154 ORTHO05D004988 1.1e-27 127.1 161 53.4
SalBow1G6205 Salvia bowleyana HOM05D004154 ORTHO05D004988 1.1e-27 127.1 161 53.4
Gohir.A11G024000 Gossypium hirsutum HOM05D004154 ORTHO05D004988 1.9e-27 126.3 158 58.9
Thecc.03G293700 Theobroma cacao HOM05D004154 ORTHO05D004988 5.5e-27 124.8 159 54.7
CANSAT21G2399 Cannabis sativa HOM05D004154 ORTHO05D004988 7.2e-27 124.4 161 52.8
Lalb_Chr05g0224221 Lupinus albus HOM05D004154 ORTHO05D004988 7.2e-27 124.4 164 54.9
Prupe.5G115800 Prunus persica HOM05D004154 ORTHO05D004988 7.2e-27 124.4 162 58.6
COL.COLO4_21713 Corchorus olitorius HOM05D004154 ORTHO05D004988 9.4e-27 124.0 159 61.0
Haze_08653 Corylus avellana HOM05D004154 ORTHO05D004988 9.4e-27 124.0 163 60.7
Glyma.05G215500 Glycine max HOM05D004154 ORTHO05D004988 1.6e-26 123.2 160 52.5
Glyma.08G021700 Glycine max HOM05D004154 ORTHO05D004988 1.6e-26 123.2 163 57.1
Medtr8g099305 Medicago truncatula HOM05D004154 ORTHO05D004988 1.6e-26 123.2 161 47.2
arahy.Tifrunner.gnm1.ann1.Y783I6 Arachis hypogaea HOM05D004154 ORTHO05D004988 2.1e-26 122.9 160 60.0
Dinv38854 Davidia involucrata HOM05D000337 ORTHO05D000297 2.1e-26 122.9 163 50.9
PSO135G0371 Papaver somniferum HOM05D004154 ORTHO05D004988 2.7e-26 122.5 164 46.3
Migut.A00676 Erythranthe guttata HOM05D004154 ORTHO05D004988 3.6e-26 122.1 158 62.7
Phvul.002G296700 Phaseolus vulgaris HOM05D004154 ORTHO05D004988 7.9e-26 120.9 161 49.7
Sopen08g030360 Solanum pennellii HOM05D004154 ORTHO05D004988 7.9e-26 120.9 161 60.2
Sed0017887 Sechium edule HOM05D004154 ORTHO05D004988 1.0e-25 120.6 162 56.2
SGA_v2.0_scaffold173G39085 Striga asiatica HOM05D004154 ORTHO05D004988 1.0e-25 120.6 156 53.8
Cpa.g.sc122.41 Carica papaya HOM05D004154 ORTHO05D004988 1.8e-25 119.8 155 61.9
CDE03G0409 Ceratophyllum demersum HOM05D004154 ORTHO05D004988 2.3e-25 119.4 160 43.8
PGSC0003DMG400012298 Solanum tuberosum HOM05D004154 ORTHO05D004988 2.3e-25 119.4 161 59.6
arahy.Tifrunner.gnm1.ann1.1D56YB Arachis hypogaea HOM05D004154 ORTHO05D004988 3.0e-25 119.0 160 56.9
Eucgr.E00847 Eucalyptus grandis HOM05D004154 ORTHO05D004988 3.0e-25 119.0 157 58.6
PSO384G3063 Papaver somniferum HOM05D004154 ORTHO05D004988 3.0e-25 119.0 164 50.6
MELO3C016306.2 Cucumis melo HOM05D004154 ORTHO05D004988 6.7e-25 117.9 162 56.8
Solyc08g082070.3 Solanum lycopersicum HOM05D004154 ORTHO05D004988 8.8e-25 117.5 161 59.6
CsaV3_4G006440 Cucumis sativus L. HOM05D004154 ORTHO05D004988 1.1e-24 117.1 162 56.2
Lj4g0021447 Lotus japonicus HOM05D004154 ORTHO05D004988 1.1e-24 117.1 160 57.5
MBI07_g24338_MAGBIO Magnolia biondii HOM05D004154 ORTHO05D004988 1.1e-24 117.1 160 50.0
TWI60G1238 Tripterygium wilfordii HOM05D004154 ORTHO05D004988 1.1e-24 117.1 159 55.3
VMungo0251G3674 Vigna mungo HOM05D004154 ORTHO05D004988 1.1e-24 117.1 161 54.7
THA.LOC104806434 Tarenaya hassleriana HOM05D004154 ORTHO05D004988 2.0e-24 116.3 159 60.4
unitig_32.g11609 Utricularia gibba HOM05D004154 ORTHO05D004988 4.4e-24 115.2 152 58.6
DCAR_027717 Daucus carota HOM05D004154 ORTHO05D004988 7.4e-24 114.4 169 52.1
Zm00001eb238060 Zea mays HOM05D004154 ORTHO05D004988 7.4e-24 114.4 157 51.0
TPR.G3381 Trifolium pratense HOM05D004154 ORTHO05D004988 1.3e-23 113.6 164 53.7
Atru.chr9.2030 Acer truncatum HOM05D004154 ORTHO05D004988 3.7e-23 112.1 157 54.8
Carub.0007s1732 Capsella rubella HOM05D004154 ORTHO05D004988 4.8e-23 111.7 158 58.2
Oeu061093.1 Olea europaea HOM05D004154 ORTHO05D004988 4.8e-23 111.7 153 55.6
Sp7g21760 Schrenkiella parvula HOM05D004154 ORTHO05D004988 6.3e-23 111.3 155 56.8
Lj8A210T88 Lonicera japonica HOM05D004154 ORTHO05D004988 1.1e-22 110.5 142 62.7
BcaNung01086 Brassica carinata HOM05D004154 ORTHO05D004988 1.8e-22 109.8 158 54.4
BraA01t01449Z Brassica rapa HOM05D004154 ORTHO05D004988 1.8e-22 109.8 158 53.8
BcaC09g50947 Brassica carinata HOM05D004154 ORTHO05D004988 3.1e-22 109.0 157 54.1
Ca_17492_v3 Cicer arietinum L. HOM05D004154 ORTHO05D004988 3.1e-22 109.0 161 43.5
ECA234G2690 Erigeron canadensis HOM05D004154 ORTHO05D004988 3.1e-22 109.0 164 54.9
AL7G29550 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 4.1e-22 108.6 158 55.1
A01p15110 Brassica napus HOM05D004154 ORTHO05D004988 5.3e-22 108.2 158 53.2
C01p19010 Brassica napus HOM05D004154 ORTHO05D004988 9.1e-22 107.5 159 56.6
BolC1t01827H Brassica oleracea HOM05D004154 ORTHO05D004988 9.1e-22 107.5 159 56.6
CARHR231190 Cardamine hirsuta HOM05D004154 ORTHO05D004988 1.5e-21 106.7 158 54.4
Duzib183G0002 Durio zibethinus HOM05D004154 ORTHO05D004988 1.5e-21 106.7 77 74.0
Carub.0006s2985 Capsella rubella HOM05D004154 ORTHO05D004988 2.0e-21 106.3 158 56.3
AUR62019814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 2.0e-21 106.3 148 44.6
Aqoxy7G00145 Aquilegia oxysepala HOM05D004154 ORTHO05D004988 2.6e-21 105.9 160 44.4
Ciclev10023918m.g Citrus clementina HOM05D004154 ORTHO05D004988 2.6e-21 105.9 77 75.3
AT4G23800 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 3.4e-21 105.5 158 54.4
Nitab4.5_0010205g0030 Nicotiana tabacum HOM05D004154 ORTHO05D004988 3.4e-21 105.5 74 74.3
Sp6g06370 Schrenkiella parvula HOM05D004154 ORTHO05D004988 4.5e-21 105.1 158 57.6
A09p28160 Brassica napus HOM05D004154 ORTHO05D004988 5.9e-21 104.8 160 56.9
BraA09t38379Z Brassica rapa HOM05D004154 ORTHO05D004988 5.9e-21 104.8 160 56.9
Thhalv10028648m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 5.9e-21 104.8 158 57.6
HanXRQChr17g0535161 Helianthus annuus HOM05D004154 ORTHO05D004988 7.7e-21 104.4 157 54.8
CARHR255520 Cardamine hirsuta HOM05D004154 ORTHO05D004988 1.0e-20 104.0 158 57.0
Thhalv10025168m.g Eutrema salsugineum HOM05D004154 ORTHO05D004988 1.0e-20 104.0 157 52.9
BcaC04g21100 Brassica carinata HOM05D004154 ORTHO05D004988 1.3e-20 103.6 160 56.2
C09p35690 Brassica napus HOM05D004154 ORTHO05D004988 1.3e-20 103.6 160 56.2
BolC9t56405H Brassica oleracea HOM05D004154 ORTHO05D004988 1.3e-20 103.6 160 56.2
MD06G1103000 Malus domestica HOM05D004154 ORTHO05D004988 1.3e-20 103.6 80 67.5
Aa31LG5G23780 Aethionema arabicum HOM05D004154 ORTHO05D004988 5.0e-20 101.7 156 57.1
Lsat_1_v5_gn_3_10260 Lactuca sativa HOM05D004154 ORTHO05D004988 5.0e-20 101.7 161 53.4
PGR042G2687 Punica granatum HOM05D004154 ORTHO05D004988 6.5e-20 101.3 161 51.6
ATR1100G049 Amborella trichopoda HOM05D004154 ORTHO05D004988 1.4e-19 100.1 155 54.2
AL6G45220 Arabidopsis lyrata HOM05D004154 ORTHO05D004988 1.4e-19 100.1 158 50.6
GSVIVG01019504001 Vitis vinifera HOM05D004154 ORTHO05D004988 1.4e-19 100.1 165 49.1
FvH4_5g04120 Fragaria vesca HOM05D004154 ORTHO05D004988 2.5e-19 99.4 130 56.2
Peaxi162Scf00074g01143 Petunia axillaris HOM05D004154 ORTHO05D004988 3.2e-19 99.0 74 70.3
MD14G1121900 Malus domestica HOM05D004154 ORTHO05D004988 5.5e-19 98.2 139 49.6
AT4G11080 Arabidopsis thaliana HOM05D004154 ORTHO05D004988 9.4e-19 97.4 158 53.8
Hund11402 Selenicereus undatus HOM05D004154 ORTHO05D004988 6.1e-18 94.7 160 50.0
Duzib205G2047 Durio zibethinus HOM05D004154 ORTHO05D004988 2.3e-17 92.8 128 61.7
SEGI_25080 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 8.8e-17 90.9 92 51.1
AUR62010814 Chenopodium quinoa HOM05D004154 ORTHO05D004988 1.5e-16 90.1 142 45.8
Psat7g026240 Pisum sativum HOM05D004154 ORTHO05D004988 2.6e-16 89.4 78 56.4
Aa31LG6G7020 Aethionema arabicum HOM05D004154 ORTHO05D004988 4.4e-16 88.6 124 57.3
Sc07g0009970 Simmondsia chinensis HOM05D004154 ORTHO05D004988 4.4e-16 88.6 154 55.2
Os02g0258200 Oryza sativa ssp. japonica HOM05D004154 ORTHO05D004988 2.8e-15 85.9 162 51.2
EL10Ac5g12892 Beta vulgaris HOM05D004154 ORTHO05D004988 1.1e-14 84.0 153 43.1
CSS0017125 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 1.1e-14 84.0 90 58.9
CSS0011943 Camellia sinensis var. sinensis HOM05D004154 ORTHO05D004988 2.0e-13 79.7 89 66.3
Pp3c11_8530 Physcomitrium patens HOM05D004154 ORTHO05D004988 5.9e-13 78.2 176 30.7
SEGI_34551 Sequoiadendron giganteum HOM05D004154 ORTHO05D004988 3.8e-12 75.5 165 32.1
Nitab4.5_0000223g0250 Nicotiana tabacum HOM05D004154 ORTHO05D004988 5.5e-11 71.6 160 49.4
AagrBONN_evm.TU.Sc2ySwM_117.3685 Anthoceros agrestis HOM05D004154 ORTHO05D004988 1.6e-10 70.1 156 32.7
PGSC0003DMG400012086 Solanum tuberosum HOM05D004154 ORTHO05D004988 1.0e-09 67.4 158 36.1
SEGI_07912 Sequoiadendron giganteum HOM05D004154 ORTHO05D012852 6.7e-09 64.7 72 51.4
Pp3c7_20570 Physcomitrium patens HOM05D004154 ORTHO05D004988 4.4e-08 62.0 176 28.4
SMO367G1063 Selaginella moellendorffii HOM05D004154 ORTHO05D004988 4.4e-08 62.0 155 32.9
FAN18G0035 Fragaria x ananassa HOM05D004154 ORTHO05D004988 6.3e-07 58.2 100 51.0
Cre06.g261450 Chlamydomonas reinhardtii HOM05D003321 ORTHO05D000541 1.1e-06 57.4 70 45.7
FAN04G1279 Fragaria x ananassa HOM05D004154 ORTHO05D004988 1.4e-06 57.0 99 49.5
FAN04G2754 Fragaria x ananassa HOM05D004154 ORTHO05D004988 1.4e-06 57.0 99 49.5
Mapoly0026s0138 Marchantia polymorpha HOM05D004154 ORTHO05D004988 1.4e-06 57.0 156 32.7
Psat6g008440 Pisum sativum HOM05D003321 ORTHO05D005161 7.0e-06 54.7 66 40.9
Sp2g23750 Schrenkiella parvula HOM05D000727 ORTHO05D000541 7.0e-06 54.7 75 41.3
Eucgr.F03571 Eucalyptus grandis HOM05D000727 ORTHO05D000541 9.1e-06 54.3 81 39.5
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 9.1e-06 54.3 75 42.7
MCO12G387 Micromonas commoda HOM05D003321 ORTHO05D005161 9.1e-06 54.3 73 39.7


User provided reference genes

Program Settings