Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0023060 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 1.6e-94 349.4 172 100.0
CSS0032270 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 4.2e-58 228.4 130 86.2
CSS0019662 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 5.3e-37 158.3 137 59.9
CSS0010660 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D028369 3.3e-23 112.5 78 74.4
CSS0005092 Camellia sinensis var. sinensis HOM05D025243 ORTHO05D000381 7.9e-17 91.3 68 72.1
CSS0005043 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.4e-15 85.5 65 67.7
CSS0025884 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 7.4e-15 84.7 56 73.2
CSS0044971 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-14 83.2 44 90.9
CSS0027277 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 6.3e-14 81.6 75 61.3
CSS0039307 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 6.3e-14 81.6 44 88.6
CSS0013778 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 8.2e-14 81.3 75 60.0
CSS0024894 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 9.1e-13 77.8 64 64.1
CSS0027250 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.2e-12 77.4 64 64.1
CSS0024494 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.5e-12 77.0 64 62.5
CSS0001421 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 2.0e-12 76.6 64 62.5
CSS0028719 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.0e-12 76.6 54 74.1
CSS0038543 Camellia sinensis var. sinensis HOM05D000524 ORTHO05D000381 4.5e-12 75.5 64 62.5
CSS0025837 Camellia sinensis var. sinensis HOM05D017199 ORTHO05D004811 7.7e-12 74.7 66 62.1
CSS0034424 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.0e-11 74.3 67 56.7
CSS0032364 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.3e-11 73.9 44 72.7
CSS0048183 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.8e-11 72.4 44 79.5
CSS0017001 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.1e-10 70.9 71 54.9
CSS0000004 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.2e-10 68.9 49 69.4
CSS0017771 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 3.6e-09 65.9 38 71.1
CSS0025084 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 4.7e-09 65.5 55 63.6
FvH4_4g16179 Fragaria vesca HOM05D000004 ORTHO05D000002 2.3e-08 63.2 49 53.1
SHI38968 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI40336 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI47393 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI47577 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI47584 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI50214 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI50774 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI51461 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI53379 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI53605 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI54165 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI54999 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI55114 Sapria himalayana HOM05D000004 ORTHO05D000002 3.0e-08 62.8 38 63.2
SHI49479 Sapria himalayana HOM05D000004 ORTHO05D000002 3.9e-08 62.4 38 63.2
CSS0020671 Camellia sinensis var. sinensis HOM05D025243 ORTHO05D112781 5.2e-08 62.0 68 54.4
Gohir.A01G123350 Gossypium hirsutum HOM05D000004 ORTHO05D000002 5.2e-08 62.0 49 59.2
SHI53900 Sapria himalayana HOM05D000004 ORTHO05D000002 5.2e-08 62.0 38 63.2
Gohir.A09G030833 Gossypium hirsutum HOM05D000004 ORTHO05D000002 6.7e-08 61.6 38 68.4
SHI52134 Sapria himalayana HOM05D000004 ORTHO05D000002 6.7e-08 61.6 41 61.0
SHI37742 Sapria himalayana HOM05D000004 ORTHO05D000002 8.8e-08 61.2 35 68.6
Gohir.A05G321508 Gossypium hirsutum HOM05D000004 ORTHO05D000002 1.1e-07 60.8 44 59.1
Gohir.A09G033875 Gossypium hirsutum HOM05D000004 ORTHO05D000002 1.1e-07 60.8 38 65.8
SHI29814 Sapria himalayana HOM05D000004 ORTHO05D016151 1.1e-07 60.8 34 79.4
CSS0038181 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.5e-07 60.5 37 73.0
Ca_18134_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.5e-07 60.5 65 47.7
SHI37684 Sapria himalayana HOM05D000004 ORTHO05D000002 1.5e-07 60.5 38 60.5
VMungo0464G0376 Vigna mungo HOM05D000004 ORTHO05D000002 1.5e-07 60.5 35 74.3
SHI41335 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-07 60.1 35 68.6
SHI49963 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-07 60.1 44 59.1
SHI50617 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-07 60.1 44 59.1
SHI52154 Sapria himalayana HOM05D000004 ORTHO05D000002 2.0e-07 60.1 44 59.1
arahy.Tifrunner.gnm1.ann1.7ESB3K Arachis hypogaea HOM05D000004 ORTHO05D000002 2.6e-07 59.7 41 65.9
arahy.Tifrunner.gnm1.ann1.8BX9LS Arachis hypogaea HOM05D000004 ORTHO05D000002 2.6e-07 59.7 41 65.9
CSS0003907 Camellia sinensis var. sinensis HOM05D025243 ORTHO05D112476 2.6e-07 59.7 68 54.4
Lalb_Chr13g0290761 Lupinus albus HOM05D000004 ORTHO05D000002 2.6e-07 59.7 44 56.8
Lalb_Chr16g0388251 Lupinus albus HOM05D000004 ORTHO05D000002 2.6e-07 59.7 44 56.8
SHI55249 Sapria himalayana HOM05D000004 ORTHO05D000002 2.6e-07 59.7 38 60.5
arahy.Tifrunner.gnm1.ann1.F5TZD4 Arachis hypogaea HOM05D000004 ORTHO05D000002 3.3e-07 59.3 41 63.4
arahy.Tifrunner.gnm1.ann1.SV62YW Arachis hypogaea HOM05D000004 ORTHO05D000002 3.3e-07 59.3 41 65.9
FvH4_4g10361 Fragaria vesca HOM05D000004 ORTHO05D000002 3.3e-07 59.3 37 67.6
Gohir.A03G100150 Gossypium hirsutum HOM05D000004 ORTHO05D000002 3.3e-07 59.3 42 61.9
Gohir.A05G308150 Gossypium hirsutum HOM05D000004 ORTHO05D000002 3.3e-07 59.3 38 65.8
SHI01309 Sapria himalayana HOM05D000004 ORTHO05D000002 3.3e-07 59.3 42 64.3
SHI38740 Sapria himalayana HOM05D000004 ORTHO05D000002 3.3e-07 59.3 41 58.5
SHI46893 Sapria himalayana HOM05D000004 ORTHO05D000002 3.3e-07 59.3 47 53.2
Atru.chr9.42 Acer truncatum HOM05D000004 ORTHO05D000002 4.4e-07 58.9 35 68.6
CANSAT64G0586 Cannabis sativa HOM05D000004 ORTHO05D000034 4.4e-07 58.9 38 63.2
SHI15025 Sapria himalayana HOM05D000004 ORTHO05D000002 4.4e-07 58.9 34 73.5
SHI54189 Sapria himalayana HOM05D000004 ORTHO05D000002 4.4e-07 58.9 38 57.9
Sopen03g011580 Solanum pennellii HOM05D000004 ORTHO05D000034 4.4e-07 58.9 41 58.5
arahy.Tifrunner.gnm1.ann1.MKUL9J Arachis hypogaea HOM05D000004 ORTHO05D000002 5.7e-07 58.5 41 61.0
CSS0047664 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 5.7e-07 58.5 35 68.6
Gohir.A06G078350 Gossypium hirsutum HOM05D000004 ORTHO05D000002 5.7e-07 58.5 38 65.8
SHI46510 Sapria himalayana HOM05D000004 ORTHO05D000002 5.7e-07 58.5 41 58.5
SHI43800 Sapria himalayana HOM05D000004 ORTHO05D000002 7.4e-07 58.2 35 65.7
THA.LOC104825588 Tarenaya hassleriana HOM05D000004 ORTHO05D000002 7.4e-07 58.2 35 77.1
Gohir.A11G189066 Gossypium hirsutum HOM05D000004 ORTHO05D000002 9.7e-07 57.8 43 60.5
VMungo1309G2802 Vigna mungo HOM05D001464 ORTHO05D002836 9.7e-07 57.8 33 72.7
CSS0044817 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.3e-06 57.4 37 67.6
CANSAT25G2914 Cannabis sativa HOM05D000004 ORTHO05D000002 1.3e-06 57.4 44 54.5
Ca_27984_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 1.3e-06 57.4 39 56.4
Lj2g0002584 Lotus japonicus HOM05D000004 ORTHO05D000002 1.3e-06 57.4 35 68.6
QL05p006227 Quercus lobata HOM05D000004 ORTHO05D000002 1.3e-06 57.4 38 63.2
QL08p035596 Quercus lobata HOM05D000004 ORTHO05D000002 1.3e-06 57.4 44 59.1
QL93p2008_0037 Quercus lobata HOM05D000004 ORTHO05D000002 1.3e-06 57.4 38 63.2
SHI30015 Sapria himalayana HOM05D000004 ORTHO05D000002 1.3e-06 57.4 35 62.9
SHI44389 Sapria himalayana HOM05D000004 ORTHO05D000002 1.3e-06 57.4 35 65.7
SHI50072 Sapria himalayana HOM05D000004 ORTHO05D000002 1.3e-06 57.4 35 65.7
CSS0000254 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.7e-06 57.0 35 65.7
CSS0013843 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.7e-06 57.0 35 65.7
CSS0017123 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.7e-06 57.0 35 65.7
CSS0033175 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.7e-06 57.0 35 65.7
CSS0034226 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 1.7e-06 57.0 35 65.7
SHI39423 Sapria himalayana HOM05D000004 ORTHO05D000002 1.7e-06 57.0 44 56.8
SHI45768 Sapria himalayana HOM05D000004 ORTHO05D000002 1.7e-06 57.0 36 66.7
SHI48849 Sapria himalayana HOM05D000004 ORTHO05D000002 1.7e-06 57.0 44 54.5
Sopen08g015020 Solanum pennellii HOM05D000004 ORTHO05D000002 1.7e-06 57.0 34 70.6
VMungo0720G1111 Vigna mungo HOM05D000004 ORTHO05D000002 1.7e-06 57.0 35 68.6
CSS0003101 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 37 67.6
CSS0006373 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 37 67.6
CSS0012883 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 37 67.6
CSS0015860 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 35 65.7
CSS0019890 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 37 67.6
CSS0021854 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 37 67.6
CSS0033949 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 37 67.6
CSS0047776 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.2e-06 56.6 37 67.6
Ca_23986_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.2e-06 56.6 35 65.7
FvH4_4g12502 Fragaria vesca HOM05D000004 ORTHO05D000002 2.2e-06 56.6 36 63.9
QL02p050943 Quercus lobata HOM05D000004 ORTHO05D000002 2.2e-06 56.6 44 54.5
SHI42770 Sapria himalayana HOM05D000004 ORTHO05D000002 2.2e-06 56.6 41 58.5
SHI42953 Sapria himalayana HOM05D000004 ORTHO05D000002 2.2e-06 56.6 41 58.5
CSS0049213 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 2.8e-06 56.2 35 65.7
Ca_27795_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 2.8e-06 56.2 35 60.0
FvH4_4g10021 Fragaria vesca HOM05D000004 ORTHO05D000002 2.8e-06 56.2 35 65.7
QL03p012298 Quercus lobata HOM05D000004 ORTHO05D000002 2.8e-06 56.2 38 63.2
QL09p028348 Quercus lobata HOM05D000004 ORTHO05D000002 2.8e-06 56.2 38 63.2
SHI15071 Sapria himalayana HOM05D000004 ORTHO05D000002 2.8e-06 56.2 34 70.6
SHI22198 Sapria himalayana HOM05D000004 ORTHO05D000002 2.8e-06 56.2 34 73.5
SHI23290 Sapria himalayana HOM05D000004 ORTHO05D000002 2.8e-06 56.2 34 67.6
FvH4_3g30771 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_4g02642 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_4g05524 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_4g10032 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_4g13341 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_4g15293 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_4g15471 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_4g22021 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_5g03402 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_5g15792 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_5g24911 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_5g36692 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_5g38072 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_5g38171 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_6g05202 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_6g21771 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_7g06031 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_7g07581 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
FvH4_7g11551 Fragaria vesca HOM05D000004 ORTHO05D000002 3.7e-06 55.8 35 65.7
Gohir.A02G078601 Gossypium hirsutum HOM05D000004 ORTHO05D000002 3.7e-06 55.8 38 65.8
Gohir.A08G126250 Gossypium hirsutum HOM05D000004 ORTHO05D000002 3.7e-06 55.8 37 59.5
Gohir.A09G043001 Gossypium hirsutum HOM05D000004 ORTHO05D000002 3.7e-06 55.8 44 54.5
Gohir.A10G224850 Gossypium hirsutum HOM05D000004 ORTHO05D000002 3.7e-06 55.8 38 60.5
QL04p087838 Quercus lobata HOM05D000004 ORTHO05D000002 3.7e-06 55.8 44 56.8
RcHm_v2.0_Chr3g0496881 Rosa chinensis HOM05D000004 ORTHO05D000002 3.7e-06 55.8 42 54.8
SHI37988 Sapria himalayana HOM05D000004 ORTHO05D000002 3.7e-06 55.8 34 70.6
SHI38249 Sapria himalayana HOM05D000004 ORTHO05D000002 3.7e-06 55.8 42 64.3
SHI51515 Sapria himalayana HOM05D000004 ORTHO05D000002 3.7e-06 55.8 34 73.5
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 4.8e-06 55.5 35 68.6
Ca_28176_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 4.8e-06 55.5 35 57.1
FvH4_5g25641 Fragaria vesca HOM05D000004 ORTHO05D000002 4.8e-06 55.5 35 65.7
SHI37464 Sapria himalayana HOM05D000004 ORTHO05D000002 4.8e-06 55.5 34 67.6
SHI39701 Sapria himalayana HOM05D000004 ORTHO05D000002 4.8e-06 55.5 48 60.4
SHI46791 Sapria himalayana HOM05D000004 ORTHO05D000002 4.8e-06 55.5 44 54.5
ECA233G1005 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.3e-06 55.1 43 55.8
ECA234G1111 Erigeron canadensis HOM05D000004 ORTHO05D000002 6.3e-06 55.1 35 62.9
Gohir.A01G137552 Gossypium hirsutum HOM05D000004 ORTHO05D000002 6.3e-06 55.1 38 60.5
HanXRQChr01g0021621 Helianthus annuus HOM05D000004 ORTHO05D000002 6.3e-06 55.1 43 51.2
RcHm_v2.0_Chr3g0457081 Rosa chinensis HOM05D000004 ORTHO05D000002 6.3e-06 55.1 38 63.2
SHI03955 Sapria himalayana HOM05D000004 ORTHO05D000002 6.3e-06 55.1 44 54.5
CSS0035245 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D000002 8.2e-06 54.7 34 64.7
Ca_13552_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 8.2e-06 54.7 35 65.7
Ca_27626_v3 Cicer arietinum L. HOM05D000004 ORTHO05D000002 8.2e-06 54.7 35 68.6
ECA236G2891 Erigeron canadensis HOM05D000004 ORTHO05D000002 8.2e-06 54.7 38 57.9
FvH4_4g09243 Fragaria vesca HOM05D000004 ORTHO05D000002 8.2e-06 54.7 35 62.9
FvH4_6g23961 Fragaria vesca HOM05D000004 ORTHO05D000002 8.2e-06 54.7 34 64.7
FvH4_6g30091 Fragaria vesca HOM05D000004 ORTHO05D000002 8.2e-06 54.7 35 65.7
Gohir.A04G067714 Gossypium hirsutum HOM05D000004 ORTHO05D000002 8.2e-06 54.7 44 50.0
HanXRQChr05g0137191 Helianthus annuus HOM05D000004 ORTHO05D000002 8.2e-06 54.7 42 50.0
HanXRQChr16g0511441 Helianthus annuus HOM05D000004 ORTHO05D000002 8.2e-06 54.7 42 50.0
SHI36056 Sapria himalayana HOM05D000004 ORTHO05D000002 8.2e-06 54.7 34 70.6
SHI39018 Sapria himalayana HOM05D000004 ORTHO05D000002 8.2e-06 54.7 34 70.6
SHI39209 Sapria himalayana HOM05D000004 ORTHO05D000002 8.2e-06 54.7 34 70.6
Sopen01g012630 Solanum pennellii HOM05D000014 ORTHO05D000093 8.2e-06 54.7 43 53.5
Sopen12g009110 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-06 54.7 42 50.0
Sopen12g013700 Solanum pennellii HOM05D000004 ORTHO05D000002 8.2e-06 54.7 43 48.8
TWI14G1029 Tripterygium wilfordii HOM05D000004 ORTHO05D000002 8.2e-06 54.7 41 53.7


User provided reference genes

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