Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 4.5e-269 930.6 460 100.0
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 9.9e-216 753.4 476 79.4
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.2e-214 748.4 477 79.5
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 5.7e-195 684.5 463 75.2
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 9.7e-195 683.7 466 75.5
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 3.1e-193 678.7 513 70.0
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 3.4e-184 648.7 475 71.2
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 1.4e-180 636.7 471 68.2
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 1.7e-170 603.2 434 68.0
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 8.2e-170 600.9 479 63.7
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 2.4e-169 599.4 482 63.1
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 4.1e-169 598.6 479 63.7
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 1.3e-167 593.6 489 62.6
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 1.5e-166 590.1 492 61.8
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 3.2e-166 589.0 475 63.2
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 5.5e-166 588.2 458 64.6
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 1.0e-164 583.9 465 63.7
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 3.0e-164 582.4 389 74.6
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 3.0e-164 582.4 467 64.0
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 6.8e-164 581.3 471 63.9
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 2.0e-163 579.7 469 64.2
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 2.2e-162 576.2 473 62.2
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 4.1e-161 572.0 467 63.6
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 7.0e-161 571.2 469 62.7
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 7.0e-161 571.2 499 59.3
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 1.0e-159 567.4 482 62.4
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 2.9e-159 565.8 473 61.1
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.1e-158 563.9 473 60.7
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.1e-157 559.7 473 60.5
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 2.7e-157 559.3 485 61.4
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 6.1e-157 558.1 470 60.2
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 3.0e-156 555.8 467 61.0
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 1.2e-155 553.9 466 61.4
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 1.5e-155 553.5 469 61.4
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 1.5e-155 553.5 473 60.5
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 2.0e-155 553.1 468 61.1
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 2.6e-155 552.7 469 60.6
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 9.8e-155 550.8 470 60.0
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 5.4e-153 545.0 476 60.7
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 1.2e-152 543.9 465 60.4
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 2.7e-152 542.7 477 59.1
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 4.5e-152 542.0 471 58.6
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 1.0e-151 540.8 449 61.2
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 1.1e-150 537.3 471 58.4
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 1.5e-150 537.0 469 60.6
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 3.3e-150 535.8 469 60.6
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 3.3e-150 535.8 449 61.9
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.6e-149 533.5 451 59.6
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 2.1e-149 533.1 471 57.3
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 2.8e-149 532.7 471 57.5
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 2.8e-149 532.7 468 59.4
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 4.7e-149 531.9 468 58.3
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 1.0e-148 530.8 471 58.0
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 1.0e-148 530.8 471 58.4
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 1.8e-148 530.0 469 59.9
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 1.8e-148 530.0 468 57.7
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 2.4e-145 519.6 449 59.7
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 5.4e-145 518.5 455 57.8
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 1.2e-144 517.3 471 57.7
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 2.0e-144 516.5 472 58.5
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 2.0e-144 516.5 469 57.4
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 5.9e-144 515.0 467 58.0
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.0e-143 514.2 365 72.9
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 8.6e-143 511.1 379 67.3
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 1.2e-141 507.3 469 55.9
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 1.6e-141 506.9 475 55.6
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 4.7e-141 505.4 467 57.2
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 4.7e-141 505.4 474 55.3
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 6.2e-141 505.0 456 57.7
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 4.0e-140 502.3 471 55.8
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 6.8e-140 501.5 440 59.3
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 2.0e-139 500.0 482 57.5
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 3.4e-139 499.2 413 61.3
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 4.4e-139 498.8 471 55.6
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 2.2e-138 496.5 477 55.6
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 3.7e-138 495.7 518 52.1
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 1.9e-137 493.4 467 54.4
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 3.2e-137 492.7 476 54.4
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 3.2e-137 492.7 475 56.0
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 5.4e-137 491.9 460 55.0
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 9.2e-137 491.1 472 54.4
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 2.0e-136 490.0 476 54.2
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 3.5e-136 489.2 569 47.8
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 1.7e-135 486.9 472 54.7
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 5.0e-135 485.3 470 53.2
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 4.3e-134 482.3 472 53.4
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 2.1e-133 479.9 472 54.2
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 2.6e-131 473.0 447 56.2
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 3.2e-129 466.1 337 68.2
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 3.2e-129 466.1 485 53.0
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 1.2e-128 464.2 458 56.6
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 3.3e-126 456.1 353 66.3
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 3.3e-126 456.1 353 66.3
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 1.4e-124 450.7 456 52.6
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 6.8e-124 448.4 372 61.8
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 1.4e-113 414.1 431 50.8
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 7.1e-105 385.2 437 48.5
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 1.0e-103 381.3 322 60.9
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 2.5e-94 350.1 474 43.0
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 4.0e-92 342.8 230 72.6
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 9.0e-92 341.7 484 40.5
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 2.2e-90 337.0 294 59.9
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 8.4e-90 335.1 344 51.2
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 6.0e-88 328.9 353 49.0
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.2e-83 314.7 233 69.1
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.6e-80 304.3 268 58.2
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 2.0e-75 287.3 394 45.2
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 2.2e-74 283.9 235 58.3
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 1.6e-72 277.7 462 36.8
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 7.4e-70 268.9 450 38.4
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.9e-65 254.2 374 40.6
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 9.1e-60 235.3 349 39.3
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 8.8e-55 218.8 299 42.5
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 1.4e-47 194.9 181 55.8
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.5e-46 191.4 151 59.6
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 2.2e-45 187.6 172 56.4
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 3.5e-43 180.3 227 44.9
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 1.5e-41 174.9 149 58.4
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 4.7e-40 169.9 175 52.6
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 5.7e-38 162.9 159 56.0
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 5.7e-38 162.9 159 56.0
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 1.7e-37 161.4 428 28.5
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 6.6e-34 149.4 150 51.3
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 9.5e-33 145.6 103 68.9
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 9.8e-30 135.6 115 60.9
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 3.3e-25 120.6 106 59.4
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.9e-20 104.8 67 71.6
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 1.1e-17 95.5 168 36.9
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.1e-16 91.3 55 74.5
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 6.2e-16 89.7 55 72.7
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 3.7e-13 80.5 113 39.8
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 3.0e-10 70.9 80 51.2
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 5.8e-06 56.6 35 71.4


User provided reference genes

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