Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022484 Camellia sinensis var. sinensis HOM05D002311 ORTHO05D009112 6.8e-75 283.9 141 100.0
CSS0029721 Camellia sinensis var. sinensis HOM05D002311 ORTHO05D006529 8.5e-09 64.3 30 100.0
CSS0009036 Camellia sinensis var. sinensis HOM05D007306 ORTHO05D009112 2.5e-08 62.8 32 100.0
MD12G1072500 Malus domestica HOM05D002311 ORTHO05D006529 2.5e-08 62.8 48 62.5
Dinv02132 Davidia involucrata HOM05D002311 ORTHO05D006529 5.5e-08 61.6 48 60.4
MD14G1069900 Malus domestica HOM05D002311 ORTHO05D006529 5.5e-08 61.6 48 60.4
QL07p021004 Quercus lobata HOM05D002311 ORTHO05D006529 7.2e-08 61.2 48 62.5
MD07G1028700 Malus domestica HOM05D002311 ORTHO05D006529 9.4e-08 60.8 48 60.4
Cfa016841 Carpinus fangiana HOM05D002311 ORTHO05D006529 1.6e-07 60.1 47 61.7
Haze_19883 Corylus avellana HOM05D002311 ORTHO05D006529 1.6e-07 60.1 47 61.7
Haze_19891 Corylus avellana HOM05D002311 ORTHO05D006529 1.6e-07 60.1 47 61.7
vmacro22362 Vaccinium macrocarpon HOM05D002311 ORTHO05D006529 1.6e-07 60.1 42 69.0
CiPaw.10G032100 Carya illinoinensis HOM05D002311 ORTHO05D006529 2.1e-07 59.7 48 60.4
TAR633G2547 Trochodendron aralioides HOM05D002311 ORTHO05D006529 2.1e-07 59.7 48 58.3
Actinidia09344 Actinidia chinensis HOM05D002311 ORTHO05D006529 2.7e-07 59.3 49 59.2
Manes.08G049400 Manihot esculenta HOM05D002311 ORTHO05D006529 2.7e-07 59.3 47 59.6
AL6G24260 Arabidopsis lyrata HOM05D002311 ORTHO05D006529 3.6e-07 58.9 47 59.6
AT5G13650 Arabidopsis thaliana HOM05D002311 ORTHO05D006529 3.6e-07 58.9 47 59.6
Carub.0006s1181 Capsella rubella HOM05D002311 ORTHO05D006529 3.6e-07 58.9 47 59.6
CARHR199790 Cardamine hirsuta HOM05D002311 ORTHO05D006529 3.6e-07 58.9 47 59.6
Atru.chr1.1064 Acer truncatum HOM05D002311 ORTHO05D006529 6.1e-07 58.2 49 59.2
Atru.ctg24.15 Acer truncatum HOM05D002311 ORTHO05D006529 6.1e-07 58.2 49 59.2
Cpa.g.sc92.30 Carica papaya HOM05D002311 ORTHO05D006529 6.1e-07 58.2 47 57.4
CDE05G0993 Ceratophyllum demersum HOM05D002311 ORTHO05D006529 6.1e-07 58.2 48 58.3
Hma1.2p1_0696F.1_g204680 Hydrangea macrophylla HOM05D002311 ORTHO05D006529 6.1e-07 58.2 30 86.7
Hma1.2p1_0696F.1_g204690 Hydrangea macrophylla HOM05D002311 ORTHO05D006529 6.1e-07 58.2 30 86.7
Nn2g15345 Nelumbo nucifera HOM05D002311 ORTHO05D006529 6.1e-07 58.2 48 56.2
unitig_8.g4574 Utricularia gibba HOM05D002311 ORTHO05D006529 6.1e-07 58.2 47 57.4
Duzib128G1675 Durio zibethinus HOM05D002311 ORTHO05D006529 8.0e-07 57.8 47 57.4
Gohir.A02G111502 Gossypium hirsutum HOM05D002311 ORTHO05D006529 8.0e-07 57.8 47 57.4
Lalb_Chr21g0316451 Lupinus albus HOM05D002311 ORTHO05D006529 8.0e-07 57.8 29 86.2
Oeu033788.1 Olea europaea HOM05D000059 ORTHO05D006529 8.0e-07 57.8 47 57.4
Rhsim03G0018300 Rhododendron simsii HOM05D002311 ORTHO05D006529 8.0e-07 57.8 68 47.1
BcaC04g24269 Brassica carinata HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
BcaNung05085 Brassica carinata HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
A02p02090 Brassica napus HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
A10p24630 Brassica napus HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
C02p06340 Brassica napus HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
C09p63440 Brassica napus HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
BolC2t06576H Brassica oleracea HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
BolC9t59190H Brassica oleracea HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
BraA02t05181Z Brassica rapa HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
BraA10t44526Z Brassica rapa HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
Migut.J01770 Erythranthe guttata HOM05D002311 ORTHO05D006529 1.0e-06 57.4 37 70.3
Thhalv10012883m.g Eutrema salsugineum HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
FvH4_6g23530 Fragaria vesca HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
FAN02G3108 Fragaria x ananassa HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
FAN05G3440 Fragaria x ananassa HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
FAN09G4492 Fragaria x ananassa HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
FAN14G1816 Fragaria x ananassa HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
PSO339G3962 Papaver somniferum HOM05D002311 ORTHO05D006529 1.0e-06 57.4 48 56.2
PSO384G0972 Papaver somniferum HOM05D002311 ORTHO05D006529 1.0e-06 57.4 48 56.2
Prupe.7G064400 Prunus persica HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 55.3
Sp6g30370 Schrenkiella parvula HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
THA.LOC104809892 Tarenaya hassleriana HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
Thecc.05G159000 Theobroma cacao HOM05D002311 ORTHO05D006529 1.0e-06 57.4 47 57.4
Ah.13g076350 Amaranthus hybridus HOM05D002311 ORTHO05D006529 1.4e-06 57.0 48 58.3
Aqoxy1G00286 Aquilegia oxysepala HOM05D002311 ORTHO05D006529 1.4e-06 57.0 48 56.2
CAN.G233.11 Capsicum annuum HOM05D002311 ORTHO05D006529 1.4e-06 57.0 37 70.3
CDE05G3675 Ceratophyllum demersum HOM05D002311 ORTHO05D006529 1.4e-06 57.0 48 56.2
AUR62024427 Chenopodium quinoa HOM05D002311 ORTHO05D006529 1.4e-06 57.0 48 58.3
AUR62026021 Chenopodium quinoa HOM05D002311 ORTHO05D006529 1.4e-06 57.0 48 58.3
Ciclev10004468m.g Citrus clementina HOM05D002311 ORTHO05D006529 1.4e-06 57.0 47 55.3
SalBow6G0967 Salvia bowleyana HOM05D002311 ORTHO05D006529 1.4e-06 57.0 37 67.6
Hund24723 Selenicereus undatus HOM05D002311 ORTHO05D006529 1.4e-06 57.0 30 83.3
Solyc03g058190.3 Solanum lycopersicum HOM05D002311 ORTHO05D006529 1.4e-06 57.0 37 70.3
Sopen03g011790 Solanum pennellii HOM05D002311 ORTHO05D006529 1.4e-06 57.0 37 70.3
Aa31sc51G30 Aethionema arabicum HOM05D002311 ORTHO05D006529 1.8e-06 56.6 29 82.8
CANSAT80G2788 Cannabis sativa HOM05D002311 ORTHO05D006529 1.8e-06 56.6 48 54.2
FAN05G4931 Fragaria x ananassa HOM05D002311 ORTHO05D006529 1.8e-06 56.6 29 82.8
FAN05G5773 Fragaria x ananassa HOM05D002311 ORTHO05D006529 1.8e-06 56.6 29 82.8
Potri.006G053000 Populus trichocarpa HOM05D002311 ORTHO05D006529 1.8e-06 56.6 29 82.8
PGR004G1010 Punica granatum HOM05D002311 ORTHO05D006529 1.8e-06 56.6 29 82.8
RcHm_v2.0_Chr3g0481531 Rosa chinensis HOM05D002311 ORTHO05D006529 1.8e-06 56.6 47 57.4
Lju124A37G55 Lonicera japonica HOM05D002311 ORTHO05D006529 2.3e-06 56.2 37 64.9
SGA_v2.0_scaffold105G30429 Striga asiatica HOM05D002311 ORTHO05D006529 2.3e-06 56.2 37 70.3
Cc06_g16900 Coffea canephora HOM05D002311 ORTHO05D006529 3.0e-06 55.8 37 67.6
Nitab4.5_0001907g0030 Nicotiana tabacum HOM05D002311 ORTHO05D006529 3.0e-06 55.8 29 82.8
Nitab4.5_0002649g0060 Nicotiana tabacum HOM05D002311 ORTHO05D006529 3.0e-06 55.8 29 82.8
Peaxi162Scf00493g00318 Petunia axillaris HOM05D002311 ORTHO05D006529 3.0e-06 55.8 37 67.6
TWI53G1546 Tripterygium wilfordii HOM05D002311 ORTHO05D006529 3.0e-06 55.8 48 54.2
HPP92_001830 Vanilla planifolia HOM05D002311 ORTHO05D006529 3.0e-06 55.8 30 83.3
EL10Ac3g07067 Beta vulgaris HOM05D002311 ORTHO05D006529 4.0e-06 55.5 48 56.2
MBI04_g36082_MAGBIO Magnolia biondii HOM05D002311 ORTHO05D006529 4.0e-06 55.5 48 54.2
Sc13g0001860 Simmondsia chinensis HOM05D002311 ORTHO05D006529 4.0e-06 55.5 30 80.0
GSVIVG01033307001 Vitis vinifera HOM05D002311 ORTHO05D006529 4.0e-06 55.5 47 55.3
COL.COLO4_28209 Corchorus olitorius HOM05D002311 ORTHO05D006529 5.2e-06 55.1 29 79.3
Gohir.D03G067600 Gossypium hirsutum HOM05D002311 ORTHO05D006529 5.2e-06 55.1 47 55.3
Gorai.003G093100 Gossypium raimondii HOM05D002311 ORTHO05D006529 5.2e-06 55.1 47 55.3
arahy.Tifrunner.gnm1.ann1.105TUT Arachis hypogaea HOM05D002311 ORTHO05D006529 6.7e-06 54.7 30 80.0
arahy.Tifrunner.gnm1.ann1.8CY9VM Arachis hypogaea HOM05D002311 ORTHO05D006529 6.7e-06 54.7 30 80.0
ClCG10G016630 Citrullus lanatus HOM05D002311 ORTHO05D006529 6.7e-06 54.7 47 55.3
MELO3C009713.2 Cucumis melo HOM05D002311 ORTHO05D006529 6.7e-06 54.7 47 55.3
CsaV3_3G039710 Cucumis sativus L. HOM05D002311 ORTHO05D006529 6.7e-06 54.7 47 55.3
DCAR_020478 Daucus carota HOM05D002311 ORTHO05D006529 6.7e-06 54.7 29 82.8
Eucgr.A02376 Eucalyptus grandis HOM05D002311 ORTHO05D006529 6.7e-06 54.7 47 55.3
HanXRQChr10g0300081 Helianthus annuus HOM05D002311 ORTHO05D006529 6.7e-06 54.7 30 76.7
Lsat_1_v5_gn_9_27161 Lactuca sativa HOM05D002311 ORTHO05D006529 6.7e-06 54.7 30 80.0
ATR0332G021 Amborella trichopoda HOM05D002311 ORTHO05D006529 8.8e-06 54.3 30 70.0
Glyma.10G103000 Glycine max HOM05D002311 ORTHO05D006529 8.8e-06 54.3 30 80.0
Sed0027113 Sechium edule HOM05D002311 ORTHO05D006529 8.8e-06 54.3 47 55.3


User provided reference genes

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