Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 2.3e-211 738.8 422 100.0
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 3.3e-149 532.3 430 77.0
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 5.6e-149 531.6 431 74.0
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 1.9e-141 506.5 435 70.6
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.0e-118 431.0 462 61.5
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.8e-115 420.2 427 60.9
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 6.7e-110 401.7 452 56.4
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 9.4e-104 381.3 431 57.8
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 3.6e-103 379.4 437 61.1
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 3.0e-102 376.3 456 55.0
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.0e-101 373.6 434 57.6
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 2.6e-101 373.2 451 56.8
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 5.7e-101 372.1 436 59.6
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.7e-100 370.5 436 59.9
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 2.8e-100 369.8 426 62.0
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.8e-100 369.8 470 53.6
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 8.2e-100 368.2 462 53.5
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.1e-99 367.9 432 58.6
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.1e-99 367.9 424 56.6
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 1.4e-99 367.5 435 60.5
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.8e-99 367.1 443 56.0
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 2.4e-99 366.7 472 56.4
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 4.1e-99 365.9 501 51.5
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.3e-97 360.9 443 57.1
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.3e-97 360.9 582 50.7
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.2e-97 360.1 436 59.4
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 2.2e-97 360.1 439 57.2
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 5.0e-97 359.0 503 50.9
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 1.1e-96 357.8 441 58.5
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.5e-96 357.5 429 54.5
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 3.2e-96 356.3 454 56.4
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 3.2e-96 356.3 422 57.1
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 4.2e-96 355.9 424 54.7
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 7.2e-96 355.1 431 60.3
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.6e-95 354.0 424 57.5
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 6.1e-95 352.1 471 56.5
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.8e-94 350.5 424 57.8
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 1.8e-94 350.5 424 57.8
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 4.0e-94 349.4 574 47.2
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 2.6e-93 346.7 447 58.6
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.6e-93 346.7 485 48.7
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 5.7e-93 345.5 470 54.0
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 5.7e-93 345.5 438 57.3
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 9.8e-93 344.7 487 52.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 4.8e-92 342.4 509 50.5
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 6.3e-92 342.0 462 54.1
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.1e-91 341.3 424 56.8
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 7.7e-90 335.1 495 48.3
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 3.8e-89 332.8 437 57.4
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 1.5e-88 330.9 534 49.4
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 1.9e-88 330.5 451 53.9
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.9e-88 330.5 437 57.9
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.2e-87 327.8 546 48.5
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 2.8e-87 326.6 532 47.4
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.4e-86 324.3 457 51.6
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 4.4e-85 319.3 526 47.3
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 7.5e-85 318.5 584 42.3
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.7e-84 317.4 465 52.5
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 2.8e-84 316.6 450 49.6
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.3e-84 315.5 467 50.5
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.3e-84 315.5 467 50.5
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.1e-83 314.7 516 43.4
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 2.4e-83 313.5 462 49.4
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 3.1e-83 313.2 423 54.1
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 3.5e-82 309.7 453 50.3
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 5.9e-82 308.9 471 49.5
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 7.8e-82 308.5 463 49.0
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 1.9e-80 303.9 446 48.2
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 2.5e-80 303.5 519 44.1
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 4.3e-80 302.8 446 48.0
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 5.6e-80 302.4 606 42.7
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 7.3e-80 302.0 600 41.8
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.8e-79 300.1 442 47.3
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 4.7e-79 299.3 538 43.1
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 4.7e-79 299.3 442 47.3
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 6.1e-79 298.9 500 47.6
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 8.0e-79 298.5 586 44.0
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 5.2e-78 295.8 446 52.5
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 6.8e-78 295.4 479 49.5
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 2.0e-77 293.9 476 46.8
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 7.5e-77 292.0 432 50.9
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 7.5e-77 292.0 520 44.8
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.3e-76 291.2 627 41.3
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.3e-76 291.2 627 41.3
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 2.2e-76 290.4 534 45.5
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 4.9e-76 289.3 424 51.2
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 8.3e-76 288.5 624 40.4
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.4e-75 287.7 641 39.6
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 4.1e-75 286.2 431 50.1
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 9.2e-75 285.0 446 49.8
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.5e-74 283.1 505 47.5
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 4.7e-71 272.7 557 42.4
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 5.2e-70 269.2 513 42.7
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 4.9e-68 262.7 169 82.8
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 2.4e-67 260.4 624 38.9
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 3.2e-67 260.0 476 42.6
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 1.7e-65 254.2 555 39.1
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 2.5e-64 250.4 528 42.2
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 6.2e-63 245.7 517 42.0
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.4e-59 233.8 242 60.3
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 3.0e-57 226.9 422 48.3
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.6e-57 225.3 429 42.0
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.2e-53 214.9 172 70.9
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.7e-52 211.1 170 68.8
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 3.4e-45 186.8 170 64.7
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.4e-43 181.4 360 47.2
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 3.9e-41 173.3 504 37.7
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 2.8e-39 167.2 170 54.1
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.8e-39 166.4 333 46.8
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.1e-39 165.6 396 34.1
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.0e-37 161.0 108 78.7
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 3.4e-37 160.2 178 55.1
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 7.6e-37 159.1 260 55.0
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.9e-36 156.4 116 76.7
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 1.4e-35 154.8 162 59.9
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.4e-35 154.8 93 84.9
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 2.3e-33 147.5 82 92.7
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 4.3e-32 143.3 148 55.4
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.8e-30 137.9 114 71.1
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 1.1e-27 128.6 221 48.4
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.4e-27 128.3 394 37.6
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 1.3e-25 121.7 106 63.2
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 6.2e-23 112.8 174 38.5
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 8.2e-23 112.5 110 61.8
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.0e-20 105.5 60 91.7
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 7.1e-19 99.4 154 45.5
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.1e-19 99.4 63 81.0
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 2.1e-18 97.8 61 83.6
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.5e-16 90.9 53 84.9
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 1.3e-15 88.6 375 29.6
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 3.7e-15 87.0 178 36.0
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 9.0e-14 82.4 96 47.9
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.1e-11 75.5 104 44.2
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.5e-11 73.2 98 41.8
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 5.7e-08 63.2 114 43.9
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 2.2e-07 61.2 452 26.3
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 6.3e-07 59.7 159 28.3
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.8e-06 58.2 62 62.9
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.1e-06 57.4 70 55.7
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.1e-06 57.4 70 55.7


User provided reference genes

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