Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 0.0e+00 1197.2 593 100.0
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 0.0e+00 1096.6 593 90.2
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 0.0e+00 1093.2 593 89.2
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.4e-294 1015.0 592 83.1
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 1.4e-291 1005.7 593 82.1
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 2.1e-290 1001.9 595 81.2
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 2.7e-290 1001.5 594 82.5
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 5.1e-289 997.3 594 82.3
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 6.7e-289 996.9 608 80.8
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 2.5e-288 995.0 594 82.2
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 3.3e-288 994.6 590 82.2
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 1.6e-287 992.3 594 81.6
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 4.0e-286 987.6 594 82.2
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 4.0e-286 987.6 598 80.1
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.0e-285 985.3 594 81.6
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 3.4e-285 984.6 594 82.0
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 7.6e-285 983.4 616 78.7
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 7.6e-285 983.4 594 81.1
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 2.9e-284 981.5 572 83.6
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 4.9e-284 980.7 596 79.9
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 1.4e-283 979.2 594 81.5
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 3.2e-283 978.0 594 80.8
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 4.2e-283 977.6 595 79.5
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 9.3e-283 976.5 593 80.1
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 4.6e-282 974.2 730 69.5
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 4.3e-280 967.6 596 79.2
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 7.4e-280 966.8 592 79.1
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 2.1e-279 965.3 594 80.1
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 2.1e-279 965.3 593 78.9
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 8.1e-279 963.4 593 78.2
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 9.0e-278 959.9 592 79.9
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 9.0e-278 959.9 592 78.7
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 1.2e-277 959.5 621 76.0
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 4.5e-277 957.6 594 79.1
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 5.8e-277 957.2 573 80.6
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 1.0e-276 956.4 594 79.0
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 1.4e-275 952.6 605 76.4
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 1.4e-275 952.6 605 76.4
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 1.4e-275 952.6 604 76.8
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 4.2e-275 951.0 604 77.2
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 5.5e-275 950.7 604 77.0
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 7.1e-275 950.3 603 76.9
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 2.1e-274 948.7 594 78.1
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.1e-274 948.7 604 76.8
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 2.7e-274 948.3 593 78.1
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 3.5e-274 948.0 572 81.8
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.8e-273 945.7 604 76.3
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 3.0e-273 944.9 597 77.2
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.9e-273 944.5 605 76.7
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.9e-273 944.5 605 76.2
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 1.3e-271 939.5 595 77.8
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 1.6e-271 939.1 598 75.8
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 2.1e-271 938.7 594 76.8
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 8.2e-271 936.8 594 76.4
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 4.1e-270 934.5 604 75.5
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 1.2e-269 932.9 604 75.3
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 1.2e-269 932.9 611 74.5
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 7.6e-269 930.2 602 76.6
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 7.6e-269 930.2 571 80.0
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 6.5e-268 927.2 576 78.3
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 8.5e-268 926.8 593 74.2
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.1e-266 922.2 594 76.1
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 2.1e-266 922.2 607 74.5
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 3.6e-266 921.4 597 75.4
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.6e-266 921.0 607 74.5
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 7.9e-266 920.2 594 74.9
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.0e-265 919.8 593 73.4
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.0e-265 919.8 594 76.1
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.9e-265 917.9 607 74.1
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 3.9e-265 917.9 594 77.3
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.7e-265 917.1 607 74.3
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 7.4e-264 913.7 594 75.9
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 3.7e-263 911.4 600 75.5
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 4.8e-263 911.0 598 74.9
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 6.3e-263 910.6 594 77.1
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.1e-262 909.8 586 74.9
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 5.3e-262 907.5 605 74.0
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 6.9e-262 907.1 594 73.1
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 7.7e-261 903.7 594 73.1
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 7.7e-261 903.7 594 73.1
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 1.0e-260 903.3 603 74.5
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 2.9e-260 901.7 594 72.9
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.9e-259 899.0 673 68.2
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 4.2e-259 897.9 600 71.8
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 4.2e-259 897.9 608 74.0
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 9.4e-259 896.7 626 73.8
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 2.6e-253 878.6 594 75.1
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 5.5e-251 870.9 605 69.9
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 1.6e-250 869.4 631 69.1
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 3.9e-249 864.8 593 70.7
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 7.7e-245 850.5 552 75.2
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.9e-244 848.6 606 69.1
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 3.8e-244 848.2 594 73.1
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 3.2e-243 845.1 524 77.1
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 4.0e-241 838.2 584 73.5
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 6.3e-239 830.9 594 68.7
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 1.1e-238 830.1 598 69.1
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 7.0e-238 827.4 604 67.4
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.0e-237 825.9 605 67.9
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 5.9e-237 824.3 517 77.6
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 2.5e-235 818.9 602 69.1
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 9.4e-235 817.0 597 66.2
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.8e-233 812.8 597 68.8
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 2.0e-232 809.3 604 65.7
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 2.0e-229 799.3 527 74.0
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 3.5e-229 798.5 534 74.0
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 2.3e-228 795.8 597 67.0
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 1.0e-220 770.4 599 66.1
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.5e-219 765.8 526 71.9
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 3.3e-219 765.4 604 65.7
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 5.6e-219 764.6 577 67.8
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 1.6e-218 763.1 594 64.5
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.8e-218 762.3 487 78.4
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.0e-217 758.8 789 54.9
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 5.2e-217 758.1 579 65.3
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.9e-204 715.3 443 77.0
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 4.1e-198 695.3 615 57.9
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 4.6e-197 691.8 514 65.4
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 2.4e-190 669.5 606 56.4
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 3.3e-187 659.1 789 50.2
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 9.0e-185 651.0 579 59.2
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.1e-182 644.0 425 76.0
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 3.9e-180 635.6 408 78.2
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.9e-173 611.3 609 54.4
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 2.3e-172 609.8 584 51.9
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 7.6e-168 594.7 499 62.1
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 7.1e-166 588.2 400 75.0
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 6.5e-151 538.5 612 46.4
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 8.5e-151 538.1 598 45.8
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 1.6e-149 533.9 381 70.6
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.7e-128 461.8 331 70.4
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 3.8e-127 459.5 318 73.0
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.2e-122 443.7 593 45.4
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 2.6e-115 420.2 289 70.2
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 2.5e-110 403.7 259 76.1
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 5.2e-108 396.0 458 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 3.4e-107 393.3 416 51.2
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.3e-106 391.3 257 75.9
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 5.9e-104 382.5 291 66.0
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.3e-94 349.0 257 68.1
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 6.2e-93 345.9 308 59.4
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.1e-85 318.9 189 79.4
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 8.3e-82 308.9 263 58.9
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.3e-79 300.8 171 85.4
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.9e-79 300.1 176 84.1
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 4.0e-76 290.0 175 78.3
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.5e-75 288.1 190 76.3
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 5.1e-71 273.1 203 64.0
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.3e-68 263.1 153 84.3
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 8.4e-66 255.8 154 81.8
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.1e-65 255.4 204 60.8
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 1.1e-65 255.4 154 81.2
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 7.8e-64 249.2 204 60.3
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 2.5e-62 244.2 467 36.0
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.1e-57 228.8 142 73.9
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 2.5e-54 217.6 257 48.2
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 2.6e-51 207.6 130 80.0
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 9.3e-49 199.1 116 78.4
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.5e-48 197.2 121 76.9
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.7e-47 192.6 120 75.0
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 1.1e-46 192.2 120 71.7
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 1.9e-46 191.4 120 72.5
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 1.1e-44 185.7 120 71.7
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 2.4e-44 184.5 120 70.8
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.4e-41 175.3 185 51.9
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 3.2e-41 174.1 145 60.7
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 4.8e-37 160.2 181 53.0
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 1.3e-34 152.1 85 81.2
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 3.2e-33 147.5 227 41.9
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 8.5e-26 122.9 149 47.7
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 2.7e-24 117.9 75 70.7
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 6.1e-24 116.7 127 52.0
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 1.4e-23 115.5 70 77.1
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 2.3e-23 114.8 66 78.8
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 3.9e-23 114.0 87 66.7
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 5.1e-23 113.6 72 72.2
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 4.8e-21 107.1 136 44.1
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 2.6e-14 84.7 104 47.1
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 1.0e-10 72.8 60 56.7
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 2.9e-10 71.2 38 86.8
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 1.2e-08 65.9 32 90.6
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 2.7e-08 64.7 47 66.0
Lsat_1_v5_gn_1_100681 Lactuca sativa HOM05D003829 ORTHO05D228871 8.8e-07 59.7 34 82.4
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 2.6e-06 58.2 45 66.7
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 2.6e-06 58.2 45 66.7


User provided reference genes

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