Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 0.0e+00 1178.7 603 100.0
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 0.0e+00 1075.5 603 90.4
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.6e-311 1072.0 603 90.9
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.8e-310 1068.5 603 90.2
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.6e-306 1054.3 603 88.9
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 8.0e-306 1053.1 603 88.6
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 8.2e-303 1043.1 601 88.0
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.2e-299 1031.2 600 87.3
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.5e-288 995.7 603 84.6
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.5e-288 995.7 603 83.3
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 2.4e-286 988.4 603 83.6
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.0e-285 985.3 603 82.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.0e-284 983.0 543 91.7
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 1.0e-284 983.0 603 82.9
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 2.3e-284 981.9 601 82.5
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 5.0e-284 980.7 627 81.0
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 6.6e-284 980.3 603 82.3
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.1e-283 979.5 602 82.4
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 1.5e-283 979.2 570 88.1
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.5e-283 977.2 601 82.2
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 7.2e-283 976.9 590 85.3
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 9.5e-283 976.5 594 82.8
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.1e-282 975.3 601 81.9
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 6.1e-282 973.8 595 82.9
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 8.0e-282 973.4 659 76.8
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 1.0e-281 973.0 601 81.7
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 4.0e-281 971.1 592 84.0
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 8.9e-281 969.9 601 81.5
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 1.5e-280 969.1 601 81.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.6e-280 968.4 601 81.4
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 9.8e-280 966.5 603 81.9
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 3.7e-279 964.5 607 80.9
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 6.3e-279 963.8 615 79.7
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.8e-278 962.2 622 79.4
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 5.9e-277 957.2 603 81.6
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.3e-276 956.1 603 79.8
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 2.9e-276 954.9 602 80.7
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 3.8e-276 954.5 594 81.5
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.6e-276 953.4 603 79.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.1e-275 953.0 603 80.6
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 9.5e-275 949.9 607 81.5
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 1.6e-274 949.1 601 79.5
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.3e-273 945.3 597 80.6
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.3e-273 945.3 604 79.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 4.0e-273 944.5 595 80.7
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 1.2e-272 943.0 602 80.1
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.2e-272 943.0 599 79.5
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 4.4e-272 941.0 604 80.0
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 9.8e-272 939.9 594 79.8
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.7e-271 939.1 595 80.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 4.9e-271 937.6 603 78.9
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 1.4e-270 936.0 595 79.8
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 4.1e-270 934.5 602 79.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 5.4e-270 934.1 604 78.3
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.2e-269 932.9 604 78.1
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.2e-269 932.9 608 79.4
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 2.7e-269 931.8 593 80.1
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 3.5e-269 931.4 595 79.5
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.5e-269 931.4 604 79.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 2.3e-268 928.7 623 77.2
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 2.3e-268 928.7 596 80.2
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.9e-268 927.9 604 77.6
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 3.9e-268 927.9 606 79.2
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.9e-268 927.9 619 78.4
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 5.0e-268 927.5 604 77.3
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 8.6e-268 926.8 569 82.4
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.1e-267 926.4 651 73.3
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.1e-267 926.4 604 77.5
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 3.3e-267 924.9 604 77.2
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 5.6e-267 924.1 604 77.5
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 9.5e-267 923.3 604 77.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.6e-266 922.5 599 77.3
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 5.2e-265 917.5 601 76.4
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 5.2e-265 917.5 595 77.8
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 2.0e-264 915.6 604 77.0
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 9.8e-264 913.3 599 76.5
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.1e-262 909.8 601 76.0
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.9e-262 909.1 684 70.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 7.0e-262 907.1 600 75.8
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 9.2e-262 906.7 599 76.1
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 9.2e-262 906.7 595 76.1
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-261 906.4 599 75.6
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 2.7e-261 905.2 599 75.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.7e-260 902.5 599 75.6
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 1.7e-260 902.5 599 75.5
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-260 902.5 599 75.5
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 1.7e-260 902.5 599 75.5
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 2.3e-260 902.1 601 78.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.3e-260 902.1 601 75.9
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 9.5e-259 896.7 604 75.3
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 1.6e-258 896.0 597 75.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 3.1e-257 891.7 600 76.3
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 5.2e-257 891.0 602 78.2
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 2.0e-256 889.0 599 75.3
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 3.4e-256 888.3 597 76.4
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 7.8e-253 877.1 615 74.3
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 6.6e-252 874.0 603 72.0
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 3.3e-251 871.7 624 72.1
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 4.3e-251 871.3 601 73.4
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 9.5e-251 870.2 577 77.3
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-250 869.8 601 73.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-250 868.6 570 79.3
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 3.6e-250 868.2 564 77.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 3.4e-248 861.7 640 71.7
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 6.6e-244 847.4 595 74.6
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 4.0e-241 838.2 594 73.7
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.4e-240 835.1 594 73.2
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 9.9e-240 833.6 657 65.3
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 4.0e-233 811.6 494 82.4
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 4.5e-232 808.1 601 69.7
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.0e-228 795.4 504 78.8
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.5e-221 771.9 480 81.7
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.3e-218 763.5 602 66.4
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.0e-217 758.4 599 64.3
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 1.8e-212 743.0 478 77.6
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 5.1e-212 741.5 592 63.7
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 5.3e-201 704.9 442 81.9
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.5e-199 697.6 552 67.8
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 1.7e-191 673.3 428 78.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.2e-190 669.1 504 68.7
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.7e-175 620.2 607 54.2
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 4.8e-170 602.1 570 53.3
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 3.8e-167 592.4 600 51.5
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 8.0e-157 558.1 436 64.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 7.3e-150 535.0 337 81.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.7e-146 522.7 367 73.0
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 9.5e-142 508.1 605 46.6
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 6.8e-140 501.9 418 62.0
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.3e-138 497.7 314 80.6
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.5e-134 483.4 535 54.2
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.4e-132 477.6 288 83.7
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 2.2e-130 470.3 576 44.8
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.1e-120 437.2 281 81.1
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.4e-113 412.5 249 81.5
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.5e-107 394.4 441 51.7
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 3.4e-107 393.3 318 66.4
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 8.2e-93 345.5 273 67.0
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 4.5e-75 286.6 689 32.2
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 9.7e-70 268.9 550 34.0
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 6.3e-69 266.2 182 76.4
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.8e-63 248.1 154 79.9
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-62 245.4 154 79.9
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 1.5e-62 245.0 156 79.5
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 7.3e-49 199.5 110 92.7
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.0e-48 196.1 112 90.2
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.6e-38 164.5 623 26.8
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.7e-34 151.8 96 78.1
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 6.2e-32 143.3 98 72.4
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.8e-31 141.7 106 64.2
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.7e-29 135.2 186 43.5
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.9e-29 134.4 99 64.6
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 1.7e-26 125.2 74 82.4
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.1e-23 114.4 95 69.5
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 8.9e-23 112.8 66 81.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.3e-21 109.0 66 72.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.3e-18 98.2 78 59.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.3e-17 94.4 643 23.5
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 3.3e-17 94.4 199 36.2
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 3.6e-16 90.9 49 89.8
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 1.8e-15 88.6 48 89.6
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 4.9e-13 80.5 71 52.1
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 5.4e-12 77.0 61 63.9
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 2.7e-11 74.7 54 72.2
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 7.8e-11 73.2 54 70.4
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 2.5e-09 68.2 54 59.3


User provided reference genes

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