Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021962 Camellia sinensis var. sinensis HOM05D038570 ORTHO05D013383 1.7e-51 205.7 103 100.0
CSS0005891 Camellia sinensis var. sinensis HOM05D038570 ORTHO05D013383 3.6e-49 198.0 103 96.1
CSS0042602 Camellia sinensis var. sinensis HOM05D038570 ORTHO05D013383 8.0e-49 196.8 103 95.1
CSS0027367 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 5.0e-43 177.6 147 68.0
CSS0027036 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 1.2e-41 172.9 147 66.7
CSS0033363 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 1.2e-41 172.9 147 66.7
CSS0027624 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 3.6e-17 91.7 102 55.9
CSS0041664 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009689 3.1e-16 88.6 102 53.9
Actinidia35825 Actinidia chinensis HOM05D000001 ORTHO05D009689 4.0e-16 88.2 72 66.7
CSS0005376 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 4.0e-16 88.2 102 54.9
CSS0000177 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 9.0e-16 87.0 102 53.9
CSS0010206 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 1.3e-14 83.2 102 53.9
CSS0009742 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 3.8e-14 81.6 102 52.9
Dinv27191 Davidia involucrata HOM05D000001 ORTHO05D009689 3.8e-14 81.6 102 51.0
Hma1.2p1_2624F.1_g325600 Hydrangea macrophylla HOM05D000001 ORTHO05D009689 2.4e-13 79.0 102 49.0
Lj8C46T8 Lonicera japonica HOM05D000001 ORTHO05D009689 2.7e-12 75.5 101 45.5
CSS0021858 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 6.0e-12 74.3 40 97.5
CSS0026881 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 7.8e-12 73.9 40 95.0
Cc03_g09390 Coffea canephora HOM05D000001 ORTHO05D009689 3.9e-11 71.6 102 42.2
CSS0028908 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D013383 5.1e-11 71.2 98 50.0
Nn3g16450 Nelumbo nucifera HOM05D000001 ORTHO05D009689 5.1e-11 71.2 102 42.2
Atru.chr4.1550 Acer truncatum HOM05D000001 ORTHO05D009689 6.6e-11 70.9 102 45.1
Haze_11666 Corylus avellana HOM05D000001 ORTHO05D004875 6.6e-11 70.9 102 44.1
Cfa008640 Carpinus fangiana HOM05D000001 ORTHO05D009689 1.5e-10 69.7 102 43.1
DCAR_009597 Daucus carota HOM05D000001 ORTHO05D009689 2.5e-10 68.9 102 41.2
QL02p010053 Quercus lobata HOM05D000001 ORTHO05D009689 3.3e-10 68.6 102 43.1
Ciclev10004567m.g Citrus clementina HOM05D000001 ORTHO05D009689 5.6e-10 67.8 102 43.1
MD04G1018600 Malus domestica HOM05D000001 ORTHO05D009689 7.3e-10 67.4 102 42.2
Nitab4.5_0000037g0010 Nicotiana tabacum HOM05D000001 ORTHO05D009689 7.3e-10 67.4 102 44.1
QL07p010176 Quercus lobata HOM05D000001 ORTHO05D009689 7.3e-10 67.4 102 42.2
HanXRQChr01g0022121 Helianthus annuus HOM05D000001 ORTHO05D009689 9.6e-10 67.0 118 37.3
Solyc09g092440.1 Solanum lycopersicum HOM05D000001 ORTHO05D009689 1.3e-09 66.6 102 44.1
Sopen09g035340 Solanum pennellii HOM05D000001 ORTHO05D009689 1.3e-09 66.6 102 44.1
PGSC0003DMG400020583 Solanum tuberosum HOM05D000001 ORTHO05D009689 1.3e-09 66.6 102 44.1
Thecc.04G193300 Theobroma cacao HOM05D000001 ORTHO05D009689 1.6e-09 66.2 102 41.2
ClCG10G010820 Citrullus lanatus HOM05D000001 ORTHO05D009689 2.1e-09 65.9 102 40.2
Gohir.A02G018200 Gossypium hirsutum HOM05D000001 ORTHO05D009689 2.1e-09 65.9 101 41.6
Gohir.D02G021400 Gossypium hirsutum HOM05D000001 ORTHO05D009689 2.1e-09 65.9 101 41.6
Gorai.005G026900 Gossypium raimondii HOM05D000001 ORTHO05D009689 2.1e-09 65.9 101 41.6
Prupe.1G167400 Prunus persica HOM05D000001 ORTHO05D009689 2.1e-09 65.9 102 42.2
CiPaw.01G115200 Carya illinoinensis HOM05D000001 ORTHO05D009689 2.8e-09 65.5 102 41.2
Duzib151G0595 Durio zibethinus HOM05D000001 ORTHO05D009689 2.8e-09 65.5 102 41.2
COL.COLO4_05434 Corchorus olitorius HOM05D000001 ORTHO05D009689 3.6e-09 65.1 102 40.2
MELO3C017967.2 Cucumis melo HOM05D000001 ORTHO05D009689 3.6e-09 65.1 102 40.2
CsaV3_4G000690 Cucumis sativus L. HOM05D000001 ORTHO05D009689 3.6e-09 65.1 102 40.2
CAN.G1155.13 Capsicum annuum HOM05D000001 ORTHO05D009689 4.8e-09 64.7 102 42.2
Cpa.g.sc157.35 Carica papaya HOM05D000001 ORTHO05D009689 6.2e-09 64.3 101 42.6
Eucgr.B02659 Eucalyptus grandis HOM05D000001 ORTHO05D009689 6.2e-09 64.3 102 43.1
RcHm_v2.0_Chr4g0413241 Rosa chinensis HOM05D000001 ORTHO05D009689 6.2e-09 64.3 105 40.0
Lsat_1_v5_gn_1_70420 Lactuca sativa HOM05D000001 ORTHO05D009689 8.1e-09 63.9 102 38.2
CANSAT78G1936 Cannabis sativa HOM05D000001 ORTHO05D009689 1.1e-08 63.5 102 40.2
Manes.09G129200 Manihot esculenta HOM05D000001 ORTHO05D009689 1.1e-08 63.5 102 40.2
Sed0011003 Sechium edule HOM05D000001 ORTHO05D009689 1.1e-08 63.5 102 39.2
Peaxi162Scf00286g01030 Petunia axillaris HOM05D000001 ORTHO05D009689 1.8e-08 62.8 101 42.6
QL05p016496 Quercus lobata HOM05D000001 ORTHO05D009689 2.4e-08 62.4 102 40.2
Potri.001G321700 Populus trichocarpa HOM05D000001 ORTHO05D009689 3.1e-08 62.0 102 40.2
TAR636G3339 Trochodendron aralioides HOM05D000001 ORTHO05D009689 3.1e-08 62.0 40 67.5
EL10Ac3g07422 Beta vulgaris HOM05D000001 ORTHO05D009689 4.0e-08 61.6 106 38.7
AUR62020878 Chenopodium quinoa HOM05D000001 ORTHO05D009689 4.0e-08 61.6 102 39.2
PGR083G2871 Punica granatum HOM05D000001 ORTHO05D009689 4.0e-08 61.6 102 38.2
MBI07_g08876_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009689 5.3e-08 61.2 102 37.3
Oeu050713.1 Olea europaea HOM05D000001 ORTHO05D009689 5.3e-08 61.2 102 39.2
AUR62018539 Chenopodium quinoa HOM05D000001 ORTHO05D009689 1.5e-07 59.7 106 37.7
Lalb_Chr08g0230481 Lupinus albus HOM05D000001 ORTHO05D009689 1.5e-07 59.7 102 38.2
Medtr3g084440 Medicago truncatula HOM05D000001 ORTHO05D009689 1.5e-07 59.7 102 36.3
BcaB04g18109 Brassica carinata HOM05D000001 ORTHO05D009689 2.0e-07 59.3 102 38.2
Phvul.001G265800 Phaseolus vulgaris HOM05D000001 ORTHO05D009689 2.0e-07 59.3 101 36.6
arahy.Tifrunner.gnm1.ann1.WNY5XZ Arachis hypogaea HOM05D000001 ORTHO05D009689 2.6e-07 58.9 101 36.6
THA.LOC104804789 Tarenaya hassleriana HOM05D000001 ORTHO05D009689 2.6e-07 58.9 102 38.2
AL7G42380 Arabidopsis lyrata HOM05D000001 ORTHO05D009689 3.4e-07 58.5 102 38.2
Lj6g0017330 Lotus japonicus HOM05D000001 ORTHO05D009689 3.4e-07 58.5 102 36.3
Migut.E01171 Erythranthe guttata HOM05D000001 ORTHO05D009689 4.5e-07 58.2 102 35.3
Thhalv10024703m.g Eutrema salsugineum HOM05D000001 ORTHO05D009689 4.5e-07 58.2 102 38.2
FvH4_4g13160 Fragaria vesca HOM05D000001 ORTHO05D009689 4.5e-07 58.2 101 39.6
FAN12G2302 Fragaria x ananassa HOM05D000001 ORTHO05D009689 4.5e-07 58.2 101 39.6
TWI26G0006 Tripterygium wilfordii HOM05D000001 ORTHO05D009689 4.5e-07 58.2 40 70.0
Aa31LG9G3310 Aethionema arabicum HOM05D000001 ORTHO05D009689 5.8e-07 57.8 106 36.8
AT4G14050 Arabidopsis thaliana HOM05D000001 ORTHO05D009689 7.6e-07 57.4 102 37.3
Glyma.11G254200 Glycine max HOM05D000001 ORTHO05D009689 7.6e-07 57.4 102 36.3
CARHR220070 Cardamine hirsuta HOM05D000001 ORTHO05D009689 9.9e-07 57.0 102 37.3
FAN17G0470 Fragaria x ananassa HOM05D000001 ORTHO05D009689 1.7e-06 56.2 105 38.1
Psat5g099480 Pisum sativum HOM05D000001 ORTHO05D009689 1.7e-06 56.2 102 35.3
MSTRG.9787 Avicennia marina HOM05D000001 ORTHO05D009689 2.2e-06 55.8 102 35.3
A08p10290 Brassica napus HOM05D000001 ORTHO05D009689 2.2e-06 55.8 102 36.3
BraA08t33027Z Brassica rapa HOM05D000001 ORTHO05D009689 2.2e-06 55.8 102 36.3
Carub.0007s2837 Capsella rubella HOM05D000001 ORTHO05D009689 2.2e-06 55.8 102 36.3
Migut.G00779 Erythranthe guttata HOM05D000001 ORTHO05D009689 2.2e-06 55.8 102 34.3
SalBow8G3977 Salvia bowleyana HOM05D000001 ORTHO05D009689 2.2e-06 55.8 102 36.3
Sc13g0000470 Simmondsia chinensis HOM05D000001 ORTHO05D009689 2.2e-06 55.8 102 36.3
VMungo1383G2021 Vigna mungo HOM05D000001 ORTHO05D009689 2.2e-06 55.8 101 36.6
Ah.04g149510 Amaranthus hybridus HOM05D000001 ORTHO05D009689 3.8e-06 55.1 102 36.3
TPR.G28944 Trifolium pratense HOM05D000001 ORTHO05D009689 3.8e-06 55.1 102 36.3
arahy.Tifrunner.gnm1.ann1.C29DLL Arachis hypogaea HOM05D000001 ORTHO05D009689 4.9e-06 54.7 101 35.6
BolC8t48095H Brassica oleracea HOM05D000001 ORTHO05D009689 4.9e-06 54.7 102 36.3
SHI08637 Sapria himalayana HOM05D000001 ORTHO05D009689 6.4e-06 54.3 101 35.6
Sp7g11860 Schrenkiella parvula HOM05D000001 ORTHO05D009689 6.4e-06 54.3 102 34.3
Sabra16G0203900 Salix brachista HOM05D000001 ORTHO05D009689 8.4e-06 53.9 102 35.3


User provided reference genes

Program Settings