Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021452 Camellia sinensis var. sinensis HOM05D004190 ORTHO05D004692 1.1e-59 233.0 110 100.0
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 8.3e-36 153.7 101 68.3
Rhsim13G0195100 Rhododendron simsii HOM05D004190 ORTHO05D004692 7.8e-34 147.1 103 68.9
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 3.3e-24 115.2 104 57.7
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 9.5e-24 113.6 108 53.7
Dinv08914 Davidia involucrata HOM05D004190 ORTHO05D004692 2.1e-23 112.5 107 52.3
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 6.2e-23 110.9 107 56.1
QL01p031797 Quercus lobata HOM05D004190 ORTHO05D004692 6.2e-23 110.9 106 52.8
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 6.2e-23 110.9 104 52.9
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 8.1e-23 110.5 105 54.3
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.1e-22 110.2 106 54.7
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 1.4e-22 109.8 104 54.8
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 2.4e-22 109.0 106 54.7
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 3.1e-22 108.6 104 52.9
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 4.0e-22 108.2 106 52.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.0e-22 108.2 103 55.3
Dinv22804 Davidia involucrata HOM05D004190 ORTHO05D004692 5.2e-22 107.8 107 54.2
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 8.9e-22 107.1 101 54.5
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 8.9e-22 107.1 100 55.0
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 8.9e-22 107.1 101 56.4
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 8.9e-22 107.1 105 51.4
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.0e-21 105.9 107 48.6
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 2.0e-21 105.9 107 48.6
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.0e-21 105.9 104 52.9
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.6e-21 105.5 101 53.5
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.6e-21 105.5 106 52.8
FAN21G2646 Fragaria x ananassa HOM05D004190 ORTHO05D004692 3.4e-21 105.1 101 54.5
Sabra09G0021900 Salix brachista HOM05D004190 ORTHO05D004692 3.4e-21 105.1 105 49.5
Haze_24100 Corylus avellana HOM05D004190 ORTHO05D004692 5.8e-21 104.4 104 52.9
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 7.6e-21 104.0 106 55.7
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.6e-21 104.0 101 52.5
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 9.9e-21 103.6 106 51.9
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.7e-20 102.8 97 52.6
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.9e-20 102.1 104 49.0
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.9e-20 102.1 106 51.9
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 4.9e-20 101.3 106 51.9
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 6.4e-20 100.9 106 50.9
Atru.chr3.3912 Acer truncatum HOM05D004190 ORTHO05D004692 3.2e-19 98.6 109 48.6
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 4.1e-19 98.2 106 50.9
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 7.1e-19 97.4 101 50.5
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 7.1e-19 97.4 104 49.0
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 7.1e-19 97.4 103 48.5
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.1e-18 95.9 111 45.9
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.1e-18 95.9 121 43.8
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 2.7e-18 95.5 117 44.4
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.7e-18 95.5 105 44.8
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 1.0e-17 93.6 104 43.3
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.7e-17 92.8 101 43.6
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 2.3e-17 92.4 106 46.2
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.9e-17 91.7 114 41.2
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 8.7e-17 90.5 113 43.4
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.1e-16 90.1 107 41.1
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-16 89.7 109 44.0
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 1.5e-16 89.7 109 44.0
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.5e-16 89.0 107 43.0
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 2.5e-16 89.0 109 44.0
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 3.3e-16 88.6 110 43.6
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 4.3e-16 88.2 114 41.2
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 4.3e-16 88.2 114 41.2
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 4.3e-16 88.2 114 41.2
Ciclev10029152m.g Citrus clementina HOM05D004190 ORTHO05D004692 4.3e-16 88.2 106 46.2
Haze_12048 Corylus avellana HOM05D004190 ORTHO05D004692 9.6e-16 87.0 113 42.5
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 2.1e-15 85.9 111 41.4
Sc21g0005810 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.1e-15 85.9 108 46.3
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 2.8e-15 85.5 114 37.7
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.6e-15 85.1 109 43.1
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 6.2e-15 84.3 110 40.9
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 8.1e-15 84.0 108 40.7
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 1.1e-14 83.6 105 41.0
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.8e-14 82.8 111 36.9
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 2.4e-14 82.4 112 37.5
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 3.1e-14 82.0 115 37.4
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 4.0e-14 81.6 111 37.8
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 5.2e-14 81.3 109 40.4
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 6.9e-14 80.9 111 36.0
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 9.0e-14 80.5 109 40.4
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 9.0e-14 80.5 106 37.7
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.2e-13 80.1 113 37.2
CAN.G745.27 Capsicum annuum HOM05D004190 ORTHO05D004692 1.2e-13 80.1 105 40.0
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 1.5e-13 79.7 107 39.3
CARHR155230 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.5e-13 79.7 115 36.5
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 2.0e-13 79.3 107 41.1
Hund04953 Selenicereus undatus HOM05D004190 ORTHO05D004692 5.8e-13 77.8 110 40.0
HanXRQChr13g0419771 Helianthus annuus HOM05D004190 ORTHO05D004692 7.6e-13 77.4 109 42.2
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 7.6e-13 77.4 104 42.3
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 7.6e-13 77.4 113 34.5
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 7.6e-13 77.4 109 36.7
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 9.9e-13 77.0 104 39.4
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 9.9e-13 77.0 110 40.0
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 1.3e-12 76.6 111 38.7
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 1.3e-12 76.6 104 39.4
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 1.3e-12 76.6 104 41.3
BcaB08g36263 Brassica carinata HOM05D004190 ORTHO05D004692 6.4e-12 74.3 117 35.0
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 6.4e-12 74.3 115 37.4
HanXRQChr03g0089211 Helianthus annuus HOM05D004190 ORTHO05D004692 6.4e-12 74.3 111 37.8
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 6.4e-12 74.3 106 36.8
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 8.4e-12 73.9 137 34.3
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 1.1e-11 73.6 117 33.3
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 1.1e-11 73.6 117 33.3
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 1.1e-11 73.6 117 33.3
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 1.1e-11 73.6 117 33.3
Oeu002348.1 Olea europaea HOM05D004190 ORTHO05D004692 1.1e-11 73.6 106 41.5
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.4e-11 73.2 114 33.3
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 2.4e-11 72.4 105 41.9
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 2.4e-11 72.4 112 33.9
MELO3C020629.2 Cucumis melo HOM05D004190 ORTHO05D004692 2.4e-11 72.4 68 50.0
CAN.G745.26 Capsicum annuum HOM05D004190 ORTHO05D004692 3.2e-11 72.0 97 42.3
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 3.2e-11 72.0 107 38.3
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 3.2e-11 72.0 109 34.9
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 3.2e-11 72.0 109 34.9
BcaB05g23553 Brassica carinata HOM05D004190 ORTHO05D004692 4.2e-11 71.6 115 32.2
Aqoxy4G02933 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 5.4e-11 71.2 100 40.0
ECA240G3776 Erigeron canadensis HOM05D004190 ORTHO05D000203 7.1e-11 70.9 107 42.1
DCAR_002216 Daucus carota HOM05D002742 ORTHO05D002959 1.2e-10 70.1 109 40.4
AUR62001782 Chenopodium quinoa HOM05D004190 ORTHO05D004692 1.6e-10 69.7 108 34.3
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 2.1e-10 69.3 105 35.2
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 2.1e-10 69.3 105 35.2
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.7e-10 68.9 94 35.1
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 1.0e-09 67.0 120 35.0
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.3e-09 66.6 118 33.1
AUR62009570 Chenopodium quinoa HOM05D004190 ORTHO05D004692 3.0e-09 65.5 108 33.3
CAN.G745.25 Capsicum annuum HOM05D004190 ORTHO05D004692 6.6e-09 64.3 110 34.5
CAN.G1733.1 Capsicum annuum HOM05D004190 ORTHO05D004692 2.5e-08 62.4 105 35.2
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 2.5e-08 62.4 78 39.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 8.1e-07 57.4 115 27.8
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 8.1e-07 57.4 96 32.3
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 1.4e-06 56.6 120 28.3
Dinv35597 Davidia involucrata HOM05D022761 ORTHO05D022494 1.8e-06 56.2 46 43.5
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 1.8e-06 56.2 60 50.0
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.8e-06 56.2 101 39.6
Aqoxy7G03749 Aquilegia oxysepala HOM05D004190 ORTHO05D004692 3.1e-06 55.5 46 45.7
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 3.1e-06 55.5 131 27.5
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 3.1e-06 55.5 104 28.8
Aa31LG8G9210 Aethionema arabicum HOM05D004190 ORTHO05D004692 4.0e-06 55.1 48 45.8
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.0e-06 55.1 111 24.3
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 5.3e-06 54.7 104 28.8
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 5.3e-06 54.7 104 28.8
PGSC0003DMG400026343 Solanum tuberosum HOM05D004190 ORTHO05D004692 9.0e-06 53.9 73 35.6


User provided reference genes

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