Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021292 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 9.0e-119 430.3 215 100.0
CSS0039283 Camellia sinensis var. sinensis HOM05D007034 ORTHO05D008665 3.4e-94 348.6 187 92.5
Actinidia18277 Actinidia chinensis HOM05D007034 ORTHO05D008665 1.4e-63 246.9 166 74.7
Dinv13693 Davidia involucrata HOM05D007034 ORTHO05D008665 3.7e-56 222.2 164 70.1
vmacro19093 Vaccinium macrocarpon HOM05D007034 ORTHO05D008665 1.2e-54 217.2 162 66.0
Rhsim08G0200400 Rhododendron simsii HOM05D007034 ORTHO05D008665 1.7e-48 196.8 162 59.9
Peaxi162Scf00314g00825 Petunia axillaris HOM05D007034 ORTHO05D008665 1.1e-47 194.1 182 59.9
Haze_19381 Corylus avellana HOM05D007034 ORTHO05D008665 2.0e-46 189.9 164 60.4
GSVIVG01014061001 Vitis vinifera HOM05D007034 ORTHO05D008665 2.0e-46 189.9 164 58.5
MD06G1128300 Malus domestica HOM05D007034 ORTHO05D008665 7.8e-46 188.0 164 60.4
TAR374G0491 Trochodendron aralioides HOM05D007034 ORTHO05D008665 7.8e-46 188.0 164 58.5
Prupe.5G138100 Prunus persica HOM05D007034 ORTHO05D008665 1.0e-45 187.6 164 57.9
Cc04_g05570 Coffea canephora HOM05D007034 ORTHO05D008665 1.3e-45 187.2 176 56.2
Thecc.03G143600 Theobroma cacao HOM05D007034 ORTHO05D008665 5.0e-45 185.3 193 53.9
Sabra12G0081400 Salix brachista HOM05D007034 ORTHO05D008665 6.6e-45 184.9 161 59.0
Oeu012864.4 Olea europaea HOM05D007034 ORTHO05D008665 8.6e-45 184.5 165 59.4
Nitab4.5_0009037g0010 Nicotiana tabacum HOM05D007034 ORTHO05D008665 1.1e-44 184.1 164 60.4
Potri.012G111800 Populus trichocarpa HOM05D007034 ORTHO05D008665 4.3e-44 182.2 202 52.0
CAN.G1008.36 Capsicum annuum HOM05D007034 ORTHO05D008665 3.6e-43 179.1 164 61.0
ECA246G4515 Erigeron canadensis HOM05D007034 ORTHO05D008665 3.6e-43 179.1 166 58.4
PGSC0003DMG400014226 Solanum tuberosum HOM05D007034 ORTHO05D008665 3.6e-43 179.1 164 59.8
Ciclev10030559m.g Citrus clementina HOM05D007034 ORTHO05D008665 6.2e-43 178.3 171 55.0
DCAR_025620 Daucus carota HOM05D007034 ORTHO05D008665 1.8e-42 176.8 164 59.1
Duzib205G0091 Durio zibethinus HOM05D007034 ORTHO05D008665 1.8e-42 176.8 194 51.0
MBI11_g40919_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 2.3e-42 176.4 165 58.8
Solyc03g117960.4 Solanum lycopersicum HOM05D007034 ORTHO05D008665 6.8e-42 174.9 164 58.5
Sopen03g036860 Solanum pennellii HOM05D007034 ORTHO05D008665 1.2e-41 174.1 164 59.1
Nitab4.5_0000976g0250 Nicotiana tabacum HOM05D007034 ORTHO05D008665 2.0e-41 173.3 164 58.5
Nn3g16191 Nelumbo nucifera HOM05D007034 ORTHO05D008665 5.8e-41 171.8 164 53.7
MD09G1063600 Malus domestica HOM05D007034 ORTHO05D008665 9.8e-41 171.0 164 55.5
Gohir.D07G050000 Gossypium hirsutum HOM05D007034 ORTHO05D008665 1.3e-40 170.6 164 57.3
COL.COLO4_37289 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.7e-40 170.2 173 53.8
Cpa.g.sc13.204 Carica papaya HOM05D007034 ORTHO05D008665 2.2e-40 169.9 180 51.7
QL10p035719 Quercus lobata HOM05D007034 ORTHO05D008665 4.9e-40 168.7 161 55.3
RcHm_v2.0_Chr7g0188231 Rosa chinensis HOM05D007034 ORTHO05D008665 8.3e-40 167.9 183 52.5
PSO017G4759 Papaver somniferum HOM05D007034 ORTHO05D008665 1.1e-39 167.5 169 53.3
Glyma.08G005800 Glycine max HOM05D007034 ORTHO05D008665 1.4e-39 167.2 164 57.3
TWI23G0512 Tripterygium wilfordii HOM05D007034 ORTHO05D008665 1.4e-39 167.2 204 46.1
SGA_v2.0_scaffold37G14662 Striga asiatica HOM05D007034 ORTHO05D008665 1.9e-39 166.8 174 54.0
Atru.BG.50.p Acer truncatum HOM05D007034 ORTHO05D008665 4.1e-39 165.6 161 53.4
CANSAT56G2345 Cannabis sativa HOM05D007034 ORTHO05D008665 4.1e-39 165.6 161 56.5
PSO017G2510 Papaver somniferum HOM05D007034 ORTHO05D008665 4.1e-39 165.6 169 52.7
VMungo0251G1097 Vigna mungo HOM05D007034 ORTHO05D008665 4.1e-39 165.6 164 55.5
Phvul.002G279600 Phaseolus vulgaris HOM05D007034 ORTHO05D008665 3.5e-38 162.5 164 54.3
SalBow7G3686 Salvia bowleyana HOM05D007034 ORTHO05D008665 5.1e-37 158.7 179 53.6
Ah.15g089920 Amaranthus hybridus HOM05D007034 ORTHO05D008665 9.5e-36 154.5 179 49.7
Sc10g0005150 Simmondsia chinensis HOM05D007034 ORTHO05D008665 9.5e-36 154.5 165 52.7
Manes.06G128800 Manihot esculenta HOM05D007034 ORTHO05D008665 1.6e-35 153.7 164 54.3
EL10Ac7g17117 Beta vulgaris HOM05D007034 ORTHO05D008665 2.1e-35 153.3 161 51.6
FAN08G2641 Fragaria x ananassa HOM05D007034 ORTHO05D008665 2.8e-35 152.9 163 49.7
HanXRQChr05g0154511 Helianthus annuus HOM05D007034 ORTHO05D008665 6.2e-35 151.8 163 52.8
FvH4_5g10030 Fragaria vesca HOM05D007034 ORTHO05D008665 1.8e-34 150.2 163 49.1
FAN18G0345 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.8e-34 150.2 163 49.1
TPR.G12786 Trifolium pratense HOM05D007034 ORTHO05D008665 1.8e-34 150.2 161 50.9
Ca_16833_v3 Cicer arietinum L. HOM05D007034 ORTHO05D008665 2.3e-34 149.8 162 51.2
Psat7g040600 Pisum sativum HOM05D007034 ORTHO05D008665 4.0e-34 149.1 162 50.6
Lj5C84G9 Lonicera japonica HOM05D007034 ORTHO05D008665 5.2e-34 148.7 162 51.9
ATR0582G190 Amborella trichopoda HOM05D007034 ORTHO05D008665 8.9e-34 147.9 182 44.0
Gorai.001G053100 Gossypium raimondii HOM05D007034 ORTHO05D008665 8.9e-34 147.9 165 49.1
Lj4g0024388 Lotus japonicus HOM05D007034 ORTHO05D008665 8.9e-34 147.9 161 50.9
Gohir.A07G045600 Gossypium hirsutum HOM05D007034 ORTHO05D008665 2.0e-33 146.7 165 49.7
Lalb_Chr07g0183941 Lupinus albus HOM05D007034 ORTHO05D008665 4.4e-33 145.6 177 49.7
MBI11_g13136_MAGBIO Magnolia biondii HOM05D007034 ORTHO05D008665 9.9e-33 144.4 161 53.4
Medtr8g095490 Medicago truncatula HOM05D007034 ORTHO05D008665 2.4e-31 139.8 161 47.2
AUR62029782 Chenopodium quinoa HOM05D007034 ORTHO05D008665 4.1e-31 139.0 161 46.6
FAN04G0206 Fragaria x ananassa HOM05D007034 ORTHO05D008665 1.3e-29 134.0 160 45.6
Lsat_1_v5_gn_5_9280 Lactuca sativa HOM05D007034 ORTHO05D008665 1.3e-29 134.0 172 47.1
arahy.Tifrunner.gnm1.ann1.FYEN8G Arachis hypogaea HOM05D007034 ORTHO05D008665 3.0e-29 132.9 162 47.5
arahy.Tifrunner.gnm1.ann1.XWK03B Arachis hypogaea HOM05D007034 ORTHO05D008665 3.9e-29 132.5 162 48.1
Glyma.05G198600 Glycine max HOM05D007034 ORTHO05D008665 3.3e-28 129.4 154 51.9
Eucgr.G00023 Eucalyptus grandis HOM05D007034 ORTHO05D008665 4.3e-28 129.0 164 47.0
Os04g0403400 Oryza sativa ssp. japonica HOM05D007034 ORTHO05D008665 5.6e-28 128.6 167 43.1
PGR042G1727 Punica granatum HOM05D007034 ORTHO05D008665 1.4e-26 124.0 171 43.9
BraA02t04915Z Brassica rapa HOM05D007034 ORTHO05D008665 4.0e-26 122.5 160 47.5
HPP92_006434 Vanilla planifolia HOM05D007034 ORTHO05D008665 4.0e-26 122.5 166 40.4
Aqoxy5G02954 Aquilegia oxysepala HOM05D007034 ORTHO05D008665 5.2e-26 122.1 171 40.9
BcaB05g21619 Brassica carinata HOM05D007034 ORTHO05D008665 2.0e-25 120.2 160 48.8
BolC2t06271H Brassica oleracea HOM05D007034 ORTHO05D008665 2.0e-25 120.2 160 48.8
Sp6g35470 Schrenkiella parvula HOM05D007034 ORTHO05D008665 3.4e-25 119.4 166 45.2
BcaC03g13189 Brassica carinata HOM05D007034 ORTHO05D008665 5.8e-25 118.6 160 48.8
C02p03100 Brassica napus HOM05D007034 ORTHO05D008665 7.6e-25 118.2 160 48.1
Aa31LG3G18970 Aethionema arabicum HOM05D007034 ORTHO05D008665 1.3e-24 117.5 165 46.1
Carub.0006s0637 Capsella rubella HOM05D007034 ORTHO05D008665 1.3e-24 117.5 161 46.6
THA.LOC104818293 Tarenaya hassleriana HOM05D007034 ORTHO05D008665 1.3e-24 117.5 179 42.5
Zm00001eb084530 Zea mays HOM05D007034 ORTHO05D008665 6.4e-24 115.2 185 38.4
AL6G17700 Arabidopsis lyrata HOM05D007034 ORTHO05D008665 4.2e-23 112.5 165 44.8
Actinidia25500 Actinidia chinensis HOM05D007034 ORTHO05D008665 6.6e-21 105.1 78 66.7
Thhalv10012509m.g Eutrema salsugineum HOM05D007034 ORTHO05D008665 1.1e-20 104.4 175 43.4
CARHR205750 Cardamine hirsuta HOM05D007034 ORTHO05D008665 1.9e-20 103.6 165 43.6
BcaB05g21618 Brassica carinata HOM05D007034 ORTHO05D008665 2.1e-19 100.1 159 42.8
AagrBONN_evm.TU.Sc2ySwM_340.151 Anthoceros agrestis HOM05D007034 ORTHO05D008665 5.8e-17 92.0 153 37.3
SMO139G0138 Selaginella moellendorffii HOM05D007034 ORTHO05D008665 1.6e-14 84.0 172 37.2
CBR_g36305 Chara braunii HOM05D007034 ORTHO05D008665 1.9e-07 60.5 105 35.2


User provided reference genes

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