Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.0e-92 342.4 173 100.0
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.7e-51 206.5 119 87.4
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-51 206.5 121 86.0
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.7e-51 206.5 121 86.0
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.5e-51 204.5 146 80.1
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 6.5e-51 204.5 121 85.1
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 8.4e-51 204.1 119 85.7
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 3.2e-50 202.2 122 81.1
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 7.1e-50 201.1 121 81.8
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.6e-49 199.9 121 81.0
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.6e-49 199.9 121 82.6
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 2.7e-49 199.1 121 81.0
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 4.6e-49 198.4 140 72.1
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 6.1e-49 198.0 121 80.2
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.9e-49 197.6 122 80.3
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 7.9e-49 197.6 119 82.4
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 7.9e-49 197.6 121 81.0
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 7.9e-49 197.6 122 80.3
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 1.0e-48 197.2 121 79.3
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 1.8e-48 196.4 121 81.0
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.8e-48 196.4 121 79.3
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 2.3e-48 196.1 121 79.3
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 3.9e-48 195.3 121 79.3
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 3.9e-48 195.3 121 81.0
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 5.1e-48 194.9 121 80.2
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 6.7e-48 194.5 121 78.5
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 8.7e-48 194.1 121 78.5
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 1.1e-47 193.7 131 77.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.5e-47 193.4 121 77.7
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 1.9e-47 193.0 119 79.8
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 1.9e-47 193.0 121 80.2
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.9e-47 193.0 121 77.7
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 1.9e-47 193.0 121 80.2
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 2.5e-47 192.6 121 79.3
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 2.5e-47 192.6 121 79.3
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 3.3e-47 192.2 121 77.7
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.3e-47 192.2 121 79.3
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.3e-47 192.2 121 79.3
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 3.3e-47 192.2 121 79.3
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 3.3e-47 192.2 115 84.3
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 4.3e-47 191.8 121 79.3
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 4.3e-47 191.8 121 79.3
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 5.7e-47 191.4 121 78.5
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 5.7e-47 191.4 119 78.2
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 5.7e-47 191.4 121 77.7
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 5.7e-47 191.4 124 77.4
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 5.7e-47 191.4 121 76.9
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 9.7e-47 190.7 121 78.5
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 9.7e-47 190.7 119 77.3
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 1.3e-46 190.3 121 77.7
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 1.6e-46 189.9 121 76.9
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 1.6e-46 189.9 121 76.9
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.6e-46 189.9 119 80.7
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.6e-46 189.9 121 76.0
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 2.2e-46 189.5 122 76.2
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 2.2e-46 189.5 124 75.8
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.7e-46 188.7 119 78.2
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.8e-46 188.3 121 76.0
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 4.8e-46 188.3 121 79.3
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 4.8e-46 188.3 123 76.4
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 4.8e-46 188.3 121 76.9
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 4.8e-46 188.3 151 66.9
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 4.8e-46 188.3 121 76.0
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 6.3e-46 188.0 115 80.0
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 6.3e-46 188.0 121 78.5
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 6.3e-46 188.0 121 79.3
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 8.2e-46 187.6 121 76.9
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 8.2e-46 187.6 121 75.2
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 8.2e-46 187.6 121 76.9
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-45 187.2 119 76.5
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.1e-45 187.2 119 76.5
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.1e-45 187.2 117 80.3
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 1.1e-45 187.2 121 76.0
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 1.4e-45 186.8 119 76.5
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.4e-45 186.8 119 76.5
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.4e-45 186.8 119 76.5
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.4e-45 186.8 121 77.7
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 1.4e-45 186.8 121 78.5
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 1.8e-45 186.4 119 76.5
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 2.4e-45 186.0 119 75.6
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 2.4e-45 186.0 119 75.6
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 2.4e-45 186.0 121 74.4
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 3.1e-45 185.7 118 76.3
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 3.1e-45 185.7 121 77.7
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 4.1e-45 185.3 121 76.9
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 4.1e-45 185.3 121 75.2
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 5.3e-45 184.9 121 76.0
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 6.9e-45 184.5 129 72.9
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 6.9e-45 184.5 119 75.6
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 6.9e-45 184.5 119 75.6
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 6.9e-45 184.5 121 75.2
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 6.9e-45 184.5 121 76.9
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 9.0e-45 184.1 123 74.8
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 1.2e-44 183.7 119 75.6
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.2e-44 183.7 129 74.4
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 1.5e-44 183.3 119 79.0
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.5e-44 183.3 120 78.3
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 1.5e-44 183.3 121 79.3
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 1.5e-44 183.3 121 79.3
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.5e-44 183.3 119 78.2
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-44 183.3 119 77.3
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 1.5e-44 183.3 119 78.2
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 1.5e-44 183.3 121 76.9
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.0e-44 183.0 117 80.3
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 2.0e-44 183.0 114 79.8
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 2.6e-44 182.6 122 73.8
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 4.5e-44 181.8 119 74.8
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 4.5e-44 181.8 120 79.2
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 1.3e-43 180.3 124 75.0
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 1.3e-43 180.3 122 76.2
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 2.9e-43 179.1 120 76.7
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.8e-43 178.7 119 78.2
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 3.8e-43 178.7 118 78.8
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.0e-43 178.3 119 77.3
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 6.5e-43 177.9 120 76.7
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.5e-43 177.9 120 76.7
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.4e-42 176.8 121 74.4
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.4e-42 176.8 120 75.8
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 3.2e-42 175.6 113 77.9
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 5.5e-42 174.9 121 72.7
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 5.5e-42 174.9 121 72.7
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 1.2e-41 173.7 122 73.8
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.6e-41 173.3 113 77.9
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.1e-41 172.9 113 77.0
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.1e-41 172.9 113 77.0
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.7e-41 172.6 113 77.0
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 4.6e-41 171.8 113 77.0
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.4e-40 170.2 113 76.1
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 2.3e-40 169.5 114 77.2
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 2.3e-40 169.5 112 75.0
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 3.0e-40 169.1 113 75.2
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 3.9e-40 168.7 112 75.9
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 1.1e-39 167.2 129 72.9
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 7.4e-39 164.5 181 53.0
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 9.7e-39 164.1 121 69.4
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.7e-38 163.3 121 71.9
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.7e-38 163.3 119 72.3
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 2.2e-38 162.9 112 72.3
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 4.8e-38 161.8 119 69.7
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 5.3e-37 158.3 114 69.3
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 6.9e-37 157.9 114 69.3
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 5.9e-36 154.8 122 68.9
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.5e-35 151.4 121 65.3
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 8.5e-35 151.0 122 65.6
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 4.7e-33 145.2 119 65.5
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 6.1e-33 144.8 143 57.3
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 5.1e-32 141.7 116 64.7
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.8e-29 133.3 120 58.3
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 9.1e-29 131.0 114 61.4
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.5e-27 124.8 138 59.4
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.9e-26 123.2 75 88.0
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.2e-25 120.6 143 50.3
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.7e-25 119.4 122 60.7
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 3.7e-22 109.0 114 56.1
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.0e-20 103.2 78 73.1
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 1.2e-17 94.0 113 49.6
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 3.0e-16 89.4 113 47.8
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 4.4e-15 85.5 44 90.9
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 9.1e-13 77.8 56 69.6
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 2.7e-09 66.2 62 61.3
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 8.8e-08 61.2 50 60.0


User provided reference genes

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