Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 5.9e-98 360.9 189 100.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 1.8e-83 312.8 190 87.9
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 6.6e-81 304.3 189 84.7
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 1.5e-80 303.1 192 84.4
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.1e-79 299.3 192 84.9
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 2.1e-79 299.3 192 84.9
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 2.8e-79 298.9 189 84.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 8.9e-78 293.9 189 81.0
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 7.5e-77 290.8 189 82.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.2e-76 289.3 189 80.4
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.1e-75 287.0 189 81.0
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.1e-75 285.4 189 79.9
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 3.1e-75 285.4 172 85.5
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 5.4e-75 284.6 189 81.0
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.4e-75 284.6 189 81.0
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.4e-75 284.6 189 81.0
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 5.4e-75 284.6 189 79.9
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 7.0e-75 284.3 189 80.4
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 7.0e-75 284.3 189 79.4
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.2e-74 283.5 190 80.5
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.2e-74 283.5 189 80.4
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.6e-74 283.1 190 81.1
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.7e-74 282.3 190 79.5
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.7e-74 282.3 189 79.4
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 2.7e-74 282.3 184 79.9
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 3.5e-74 282.0 190 80.5
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 4.5e-74 281.6 189 79.9
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.0e-73 280.4 189 78.3
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.7e-73 279.6 188 78.2
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 3.8e-73 278.5 193 77.7
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 8.6e-73 277.3 190 80.5
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 1.9e-72 276.2 188 79.3
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 4.3e-72 275.0 194 77.8
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 5.6e-72 274.6 170 84.7
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 9.5e-72 273.9 190 77.9
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 9.5e-72 273.9 190 78.4
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 9.5e-72 273.9 188 79.3
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.2e-71 273.5 191 78.5
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 1.2e-71 273.5 190 78.4
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.6e-71 273.1 188 78.7
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 1.6e-71 273.1 190 79.5
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.6e-71 273.1 190 78.4
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.7e-71 271.6 190 76.8
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 4.7e-71 271.6 189 77.2
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 6.1e-71 271.2 188 78.2
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 8.0e-71 270.8 190 76.8
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 8.0e-71 270.8 193 75.1
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 2.3e-70 269.2 190 77.4
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 3.1e-70 268.9 188 75.0
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 5.2e-70 268.1 188 80.9
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.8e-70 267.7 190 76.8
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.2e-69 266.9 190 76.8
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.2e-69 266.9 192 78.1
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 2.0e-69 266.2 188 75.0
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.0e-69 266.2 195 75.9
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 4.4e-69 265.0 188 75.5
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 1.3e-68 263.5 189 73.5
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 2.9e-68 262.3 183 78.1
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 8.3e-68 260.8 193 75.6
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 8.3e-68 260.8 205 70.2
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 2.4e-67 259.2 190 75.3
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 7.0e-67 257.7 179 76.0
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 9.2e-67 257.3 227 65.2
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 1.2e-66 256.9 189 73.5
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.6e-66 256.5 217 66.8
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.6e-66 256.5 189 74.6
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 1.6e-66 256.5 189 73.0
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.0e-66 256.1 189 74.1
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 6.0e-66 254.6 192 74.5
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 6.0e-66 254.6 189 73.5
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.3e-65 253.4 190 74.2
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 1.7e-65 253.1 161 82.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.7e-65 253.1 190 73.7
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.3e-65 252.7 192 74.0
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.3e-65 252.7 189 72.0
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.9e-65 251.9 189 72.0
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 5.0e-65 251.5 189 73.0
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 8.6e-65 250.8 188 73.4
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 3.3e-64 248.8 189 71.4
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.6e-64 248.1 188 76.1
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 7.3e-64 247.7 189 69.3
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 9.5e-64 247.3 192 71.9
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 2.8e-63 245.7 192 72.4
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-63 245.4 194 73.2
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-63 245.4 194 73.2
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 3.6e-63 245.4 190 69.5
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 6.2e-63 244.6 192 72.4
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 1.8e-62 243.0 193 72.5
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.8e-62 243.0 189 69.8
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-62 242.7 193 72.0
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.3e-62 242.7 188 73.9
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.3e-62 242.7 180 74.4
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.3e-62 242.7 190 68.9
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 2.3e-62 242.7 189 70.4
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 6.8e-62 241.1 193 71.5
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 6.8e-62 241.1 193 71.5
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 6.8e-62 241.1 193 71.5
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 2.6e-61 239.2 192 70.3
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 4.4e-61 238.4 195 68.7
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.7e-60 236.5 188 70.2
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.2e-60 236.1 181 71.8
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 4.9e-60 235.0 194 69.6
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 2.1e-58 229.6 206 63.1
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.7e-58 229.2 158 77.8
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 4.6e-58 228.4 193 69.4
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.3e-57 226.9 189 66.7
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 1.3e-57 226.9 189 67.7
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.3e-57 226.1 147 81.6
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.3e-57 226.1 218 60.1
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 3.0e-57 225.7 202 64.9
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 3.9e-57 225.3 183 69.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 8.6e-57 224.2 189 66.1
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-56 223.8 151 78.1
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-56 223.8 151 78.8
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.1e-56 223.8 151 78.1
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 1.1e-56 223.8 191 69.6
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 1.1e-56 223.8 180 67.8
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 7.3e-56 221.1 151 77.5
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.6e-55 219.9 190 68.9
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.1e-54 217.2 155 75.5
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.4e-54 216.9 189 67.2
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 8.9e-54 214.2 125 84.8
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 2.0e-53 213.0 126 84.9
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 2.0e-53 213.0 124 87.1
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 4.4e-53 211.8 125 87.2
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 9.9e-53 210.7 125 86.4
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 6.4e-52 208.0 199 60.8
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.9e-51 206.5 186 59.1
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 3.2e-51 205.7 153 73.2
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 3.2e-51 205.7 157 71.3
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 4.1e-51 205.3 157 71.3
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 7.1e-51 204.5 186 59.1
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 2.7e-50 202.6 132 78.0
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.7e-49 199.9 194 62.9
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.7e-49 199.9 175 60.6
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 3.0e-49 199.1 201 61.7
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.1e-48 197.2 124 80.6
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.5e-48 196.8 147 75.5
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 7.3e-48 194.5 152 70.4
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 1.2e-47 193.7 152 70.4
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 1.6e-47 193.4 152 70.4
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.6e-47 192.2 140 72.1
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 2.9e-44 182.6 202 58.4
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 5.6e-40 168.3 157 59.2
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 7.3e-40 167.9 194 53.6
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.6e-39 165.6 196 54.1
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.4e-38 163.7 125 65.6
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 3.1e-38 162.5 191 50.8
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 5.3e-38 161.8 139 63.3
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 1.5e-37 160.2 124 63.7
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 7.6e-37 157.9 110 75.5
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 5.4e-35 151.8 162 54.9
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 7.1e-35 151.4 127 59.1
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 7.1e-35 151.4 191 51.8
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 2.7e-34 149.4 123 68.3
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 4.3e-32 142.1 177 48.6
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 4.3e-32 142.1 93 81.7
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.1e-31 139.8 166 50.6
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-30 137.5 87 81.6
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 3.1e-30 136.0 155 58.1
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-29 133.7 103 62.1
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-25 119.4 69 87.0
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.8e-23 112.1 68 83.8
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.8e-22 110.2 68 82.4
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.5e-18 95.9 57 82.5
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 6.0e-18 95.1 54 85.2
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.0e-18 95.1 58 82.8
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-17 94.0 129 52.7
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.3e-17 94.0 58 81.0
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 2.3e-17 93.2 129 52.7
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 3.9e-17 92.4 74 63.5
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.8e-15 86.3 47 87.2
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 2.8e-15 86.3 124 39.5
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 9.0e-14 81.3 100 57.0
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.7e-12 77.0 81 55.6
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.5e-08 63.2 50 66.0
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 7.4e-08 61.6 67 52.2
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 1.3e-07 60.8 67 52.2
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 1.8e-06 57.0 67 49.3
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 1.8e-06 57.0 31 90.3


User provided reference genes

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