Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 7.5e-161 570.5 291 100.0
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.9e-156 555.8 291 97.9
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 1.1e-146 523.5 291 91.1
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 4.4e-145 518.1 291 90.4
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 2.4e-143 512.3 290 87.9
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.6e-142 509.6 292 88.7
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 4.6e-142 508.1 290 86.2
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 7.8e-142 507.3 290 86.9
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.0e-141 506.9 290 87.2
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.7e-141 506.1 290 87.9
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.0e-141 505.4 290 85.9
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 6.6e-141 504.2 290 86.2
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 3.3e-140 501.9 290 86.2
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.3e-140 500.7 290 87.2
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.6e-139 499.6 290 86.2
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.6e-139 499.6 290 84.8
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 3.6e-139 498.4 290 85.5
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 3.6e-139 498.4 290 86.9
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.4e-138 496.5 290 85.9
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 2.4e-138 495.7 290 85.9
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.4e-138 495.7 290 85.5
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 3.1e-138 495.4 281 87.2
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.5e-137 493.0 292 83.9
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 2.6e-137 492.3 290 83.8
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 7.6e-137 490.7 290 84.1
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.2e-136 489.2 291 81.4
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 2.9e-136 488.8 292 83.9
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 4.9e-136 488.0 292 84.9
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 6.4e-136 487.6 291 81.8
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 8.4e-136 487.3 290 85.2
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 8.4e-136 487.3 292 83.6
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.1e-135 486.9 291 81.8
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 85.3
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.4e-135 486.5 290 83.8
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.2e-135 485.0 290 82.1
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 4.2e-135 485.0 321 78.5
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 4.6e-134 481.5 290 84.1
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.0e-133 480.3 290 81.4
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 3.0e-133 478.8 290 83.1
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 5.1e-133 478.0 291 83.8
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.5e-132 476.5 290 82.1
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 5.6e-132 474.6 290 81.4
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.6e-131 473.0 290 81.4
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.6e-131 473.0 319 76.5
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 4.8e-131 471.5 304 78.3
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 6.2e-131 471.1 291 79.7
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 8.1e-131 470.7 295 80.7
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 4.0e-130 468.4 291 79.0
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 6.9e-130 467.6 324 73.8
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.5e-129 466.5 292 80.8
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.6e-129 465.7 291 81.1
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.6e-129 465.7 271 86.0
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 5.8e-129 464.5 291 81.1
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 7.6e-129 464.2 290 79.0
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 9.9e-129 463.8 290 79.3
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 3.8e-128 461.8 289 79.9
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 8.4e-128 460.7 290 81.0
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 7.1e-127 457.6 290 79.0
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 2.7e-126 455.7 386 67.1
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 6.0e-126 454.5 290 79.3
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 2.3e-125 452.6 290 79.3
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.3e-125 452.6 291 79.4
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 3.0e-125 452.2 290 78.6
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.0e-125 452.2 290 78.3
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 6.7e-125 451.1 291 78.7
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-124 450.3 290 78.3
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.5e-124 449.9 290 78.6
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 5.3e-122 441.4 291 76.3
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 5.3e-122 441.4 291 75.3
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 6.9e-122 441.0 326 70.9
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 9.0e-122 440.7 268 80.6
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 5.8e-121 438.0 290 76.6
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 7.6e-121 437.6 292 75.3
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 1.3e-120 436.8 295 76.3
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.7e-120 436.4 291 73.9
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 2.2e-120 436.0 290 76.2
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.9e-120 435.6 290 73.4
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 3.8e-120 435.3 292 76.4
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 3.8e-120 435.3 294 73.1
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 6.5e-120 434.5 290 75.9
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.5e-120 434.5 291 74.2
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.9e-119 433.0 290 77.9
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 9.3e-119 430.6 291 76.3
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.0e-117 427.2 311 70.1
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.0e-117 427.2 309 70.2
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-117 426.8 293 75.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.3e-117 426.8 293 75.1
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 3.9e-117 425.2 296 72.0
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-116 422.5 290 74.1
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 2.5e-116 422.5 290 74.1
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.3e-116 422.2 235 89.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 4.3e-116 421.8 291 74.2
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 5.7e-116 421.4 290 76.2
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.3e-115 420.2 291 74.6
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 4.8e-115 418.3 290 72.4
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 6.3e-115 417.9 291 72.9
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 8.2e-115 417.5 290 73.4
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.4e-114 416.8 292 74.7
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 3.1e-114 415.6 283 74.9
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.6e-113 412.5 291 73.9
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 4.5e-113 411.8 290 73.4
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.1e-111 407.1 290 73.1
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 9.4e-111 404.1 291 73.2
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.8e-109 399.8 290 71.0
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.3e-109 399.4 297 70.0
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 5.7e-108 394.8 293 70.6
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 7.4e-108 394.4 290 71.7
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 7.4e-108 394.4 229 85.6
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 1.3e-107 393.7 293 70.3
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 2.8e-107 392.5 291 70.4
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.8e-106 389.8 290 68.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.6e-105 386.0 293 70.3
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 1.7e-104 383.3 290 66.9
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 8.5e-104 380.9 298 67.8
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 3.6e-102 375.6 290 67.2
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 2.8e-99 365.9 208 87.5
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 8.2e-99 364.4 290 69.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.1e-98 364.0 290 65.2
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.8e-98 363.2 225 78.7
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-98 363.2 297 64.6
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 9.4e-95 350.9 189 90.5
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 4.7e-94 348.6 229 75.5
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 4.7e-94 348.6 291 62.5
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 2.3e-93 346.3 263 69.6
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 6.7e-93 344.7 239 74.9
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.0e-85 320.9 286 60.1
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 2.4e-82 309.7 285 56.8
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 6.1e-78 295.0 184 76.1
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 2.6e-76 289.7 303 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 6.3e-75 285.0 188 71.3
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 7.0e-74 281.6 201 71.1
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.2e-73 280.8 298 51.7
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 8.9e-69 264.6 294 52.4
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 8.3e-67 258.1 291 51.9
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 8.6e-56 221.5 293 47.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 8.6e-56 221.5 293 47.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 8.6e-56 221.5 293 47.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 3.1e-53 213.0 263 51.3
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.1e-46 190.3 103 90.3
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 4.4e-44 182.6 106 84.0
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 9.9e-44 181.4 151 63.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.3e-40 171.0 231 46.8
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.3e-39 166.4 153 60.8
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.6e-39 164.9 153 60.1
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 9.6e-39 164.9 153 60.1
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 2.0e-36 157.1 86 90.7
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.1e-34 151.4 194 43.3
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.3e-32 143.7 91 78.0
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.0e-29 132.9 107 61.7
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 1.3e-27 127.9 73 83.6
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 1.3e-27 127.9 73 83.6
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 4.9e-27 125.9 72 83.3
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 4.3e-23 112.8 95 65.3
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.8e-22 110.2 68 77.9
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 7.6e-20 102.1 188 38.8
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.9e-19 99.4 60 76.7
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.6e-17 94.4 128 43.8
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 3.3e-15 86.7 57 73.7
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 5.6e-15 85.9 86 57.0
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 9.6e-15 85.1 231 31.2
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.0e-11 75.1 56 69.6
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 2.1e-06 57.4 36 69.4
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 2.1e-06 57.4 36 69.4


User provided reference genes

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