Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 2097.0 1068 100.0
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1855.1 1073 88.0
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1846.6 1068 88.1
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1750.7 1074 81.8
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1732.2 1094 81.5
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1711.0 1073 79.6
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 1698.7 1074 79.2
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1696.4 1071 79.6
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1692.2 1076 79.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1690.2 1070 79.4
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1689.5 1082 79.3
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1687.2 1076 78.8
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1676.4 1085 77.7
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1674.8 1075 77.1
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1670.2 1072 78.1
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1663.3 1076 77.5
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1662.9 1074 78.1
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1662.5 1069 77.6
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1658.7 1069 77.5
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1656.7 1142 74.8
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1655.6 1074 77.9
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1655.6 1088 77.8
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1652.9 1117 76.1
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1651.7 1080 76.9
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1651.0 1073 77.0
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1649.0 1073 77.0
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1644.8 1073 76.7
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1633.6 1078 75.6
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1633.6 1077 75.6
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1632.5 1077 76.0
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1628.2 1075 77.0
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1626.7 1075 76.7
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1624.8 1069 77.3
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1617.4 1074 75.6
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1617.1 1069 76.7
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1616.3 1074 75.0
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1615.5 1118 73.7
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1609.3 1074 75.5
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1607.4 948 85.9
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1607.0 1069 76.7
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1605.5 1085 74.5
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1603.2 1072 74.7
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1603.2 1072 74.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1587.4 1083 74.6
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1585.9 1070 74.8
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1585.1 1073 74.7
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1581.6 997 78.2
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1579.3 1072 73.0
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1578.1 1067 73.9
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1572.8 1070 74.7
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1572.0 1072 74.3
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1570.1 1083 73.8
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1567.4 1076 74.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1565.8 965 81.1
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1565.4 1159 69.6
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1554.3 971 79.3
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1551.2 1078 73.0
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1549.3 1074 74.2
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1540.4 1078 73.0
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1538.5 1096 72.2
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1536.9 1078 72.9
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1535.0 1077 72.9
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1532.3 1078 72.9
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1531.9 1099 71.4
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1522.3 948 80.2
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1521.1 1095 72.0
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1511.1 988 75.4
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1499.6 1074 71.8
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1499.2 978 77.8
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1497.6 947 78.9
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1497.3 1223 65.2
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1478.8 998 74.3
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1459.9 1039 70.4
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1459.1 1029 70.4
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1449.1 1002 71.2
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1427.5 1191 64.3
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1372.8 978 68.9
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1355.9 1120 64.4
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1341.3 868 77.6
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1320.4 883 76.0
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1312.4 967 71.4
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1309.7 1089 64.8
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1254.2 1008 62.4
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1250.0 1041 59.9
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1239.2 1004 62.1
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1179.5 1136 57.9
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1167.1 1006 56.8
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1130.5 1095 57.8
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 0.0e+00 1107.8 664 82.2
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 3.7e-311 1071.6 1012 55.0
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 2.6e-307 1058.9 751 70.4
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 9.5e-294 1013.8 1011 51.6
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 2.0e-291 1006.1 1022 52.4
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 4.4e-291 1005.0 997 55.6
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 9.6e-262 907.5 597 77.2
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 2.8e-261 906.0 620 73.9
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 4.2e-241 839.0 584 72.4
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 1.6e-216 757.3 496 77.0
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 7.4e-206 721.8 518 73.0
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 1.4e-204 717.6 472 74.4
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 4.1e-204 716.1 622 63.7
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 2.1e-200 703.7 631 61.5
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.0e-194 684.9 816 50.9
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.0e-183 646.7 459 70.6
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 5.0e-178 629.4 410 75.6
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 2.8e-176 623.6 383 82.5
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 7.0e-164 582.4 397 72.8
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 6.2e-152 542.7 351 80.1
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 1.0e-138 498.8 337 76.3
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.8e-136 490.7 308 81.5
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 6.9e-135 486.1 285 84.2
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 7.9e-131 472.6 328 72.0
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 5.6e-129 466.5 392 63.8
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 2.1e-115 421.4 294 69.4
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 8.7e-114 416.0 817 37.0
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 6.3e-104 383.3 197 90.4
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.5e-100 371.3 241 76.3
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.5e-86 324.3 221 75.6
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 8.8e-82 309.7 292 50.3
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 1.6e-75 288.9 170 84.7
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 5.9e-62 243.8 174 71.3
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 3.4e-57 228.0 142 78.2
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 1.2e-51 209.5 186 61.3
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 7.8e-46 190.3 150 60.0
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 3.4e-41 174.9 203 51.2
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 3.7e-40 171.4 105 78.1
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 3.9e-37 161.4 148 56.8
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 4.3e-36 157.9 112 67.0
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.2e-35 156.4 130 57.7
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.1e-35 155.6 122 71.3
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 2.1e-35 155.6 122 71.3
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 4.0e-34 151.4 100 73.0
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 1.2e-33 149.8 125 60.0
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 3.8e-32 144.8 120 64.2
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 8.4e-32 143.7 83 83.1
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 3.0e-29 135.2 90 70.0
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 1.1e-28 133.3 92 70.7
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 3.3e-28 131.7 103 60.2
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 2.1e-22 112.5 135 49.6
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.5e-20 106.3 197 36.0
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 3.3e-20 105.1 73 71.2
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 1.1e-18 100.1 132 43.2
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.4e-18 99.8 67 74.6
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.1e-18 98.6 69 68.1
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 2.7e-14 85.5 109 49.5
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 1.8e-13 82.8 54 72.2
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 1.1e-10 73.6 55 63.6
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 3.1e-10 72.0 59 62.7
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 4.5e-09 68.2 45 68.9
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 1.7e-08 66.2 57 61.4
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 1.7e-08 66.2 57 61.4
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 1.7e-08 66.2 57 61.4
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 2.9e-08 65.5 57 61.4
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 1.4e-07 63.2 43 72.1
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 1.9e-07 62.8 37 73.0
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 2.5e-07 62.4 57 57.9
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 9.3e-07 60.5 29 86.2
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 2.1e-06 59.3 82 40.2
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 6.0e-06 57.8 59 50.8


User provided reference genes

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