Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-36 154.8 74 100.0
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.5e-36 154.8 74 100.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.9e-34 146.4 72 97.2
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.4e-33 144.1 74 94.6
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-32 142.1 72 94.4
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.4e-31 137.1 72 91.7
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.7e-21 105.5 56 91.1
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.4e-18 95.9 66 71.2
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.8e-18 95.5 66 71.2
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.8e-18 95.5 66 71.2
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 5.8e-17 90.5 65 72.3
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.7e-16 89.0 65 69.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.2e-16 88.6 58 70.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 8.4e-16 86.7 65 66.2
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.1e-15 86.3 65 67.7
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-15 86.3 61 70.5
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 2.4e-15 85.1 65 67.7
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 2.4e-15 85.1 65 67.7
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 2.4e-15 85.1 65 66.2
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 2.4e-15 85.1 65 67.7
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.2e-15 84.7 58 72.4
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.2e-15 84.7 65 67.7
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 3.2e-15 84.7 65 66.2
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 4.2e-15 84.3 51 80.4
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.2e-15 84.3 61 68.9
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 4.2e-15 84.3 58 72.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 5.4e-15 84.0 61 70.5
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 7.1e-15 83.6 58 70.7
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 9.3e-15 83.2 65 61.5
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.2e-14 82.8 65 66.2
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.6e-14 82.4 60 68.3
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.7e-14 81.6 65 63.1
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.5e-14 81.3 60 66.7
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 3.5e-14 81.3 65 63.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 3.5e-14 81.3 65 64.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 4.6e-14 80.9 65 64.6
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.6e-14 80.9 61 67.2
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.6e-14 80.9 61 67.2
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 6.0e-14 80.5 66 63.6
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 7.9e-14 80.1 60 66.7
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 7.9e-14 80.1 61 67.2
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 7.9e-14 80.1 56 73.2
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.0e-13 79.7 65 61.5
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.3e-13 79.3 65 61.5
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.8e-13 79.0 65 58.5
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 1.8e-13 79.0 65 58.5
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.8e-13 79.0 58 65.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 1.8e-13 79.0 65 63.1
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 2.3e-13 78.6 54 66.7
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 3.0e-13 78.2 65 63.1
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 3.0e-13 78.2 65 60.0
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.9e-13 77.8 57 66.7
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.9e-13 77.8 65 63.1
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 5.1e-13 77.4 61 62.3
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 5.1e-13 77.4 58 67.2
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 5.1e-13 77.4 63 58.7
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 8.7e-13 76.6 54 64.8
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 8.7e-13 76.6 58 65.5
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 8.7e-13 76.6 58 65.5
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.1e-12 76.3 56 71.4
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.1e-12 76.3 65 58.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 1.5e-12 75.9 54 66.7
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 1.5e-12 75.9 60 63.3
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.5e-12 75.9 57 64.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.5e-12 75.9 55 70.9
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.9e-12 75.5 58 62.1
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 1.9e-12 75.5 65 60.0
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 1.9e-12 75.5 58 58.6
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 1.9e-12 75.5 58 65.5
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.5e-12 75.1 58 63.8
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 3.3e-12 74.7 58 62.1
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 3.3e-12 74.7 51 68.6
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 3.3e-12 74.7 58 58.6
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 4.3e-12 74.3 57 64.9
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 5.6e-12 73.9 58 67.2
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 5.6e-12 73.9 58 58.6
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 5.6e-12 73.9 65 58.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 7.4e-12 73.6 65 60.0
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 7.4e-12 73.6 51 66.7
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 9.6e-12 73.2 61 63.9
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 9.6e-12 73.2 61 63.9
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.3e-11 72.8 65 61.5
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.6e-11 72.4 61 63.9
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.6e-11 72.4 65 61.5
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.6e-11 72.4 59 59.3
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 1.6e-11 72.4 58 63.8
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.1e-11 72.0 57 59.6
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 2.1e-11 72.0 54 63.0
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.1e-11 72.0 65 58.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 3.7e-11 71.2 58 63.8
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.7e-11 71.2 61 62.3
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 4.8e-11 70.9 60 65.0
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 6.2e-11 70.5 65 60.0
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 6.2e-11 70.5 58 56.9
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 8.1e-11 70.1 65 60.0
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 8.1e-11 70.1 65 60.0
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.1e-10 69.7 65 58.5
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-10 69.7 61 62.3
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.1e-10 69.7 56 60.7
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.4e-10 69.3 58 58.6
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 1.8e-10 68.9 58 65.5
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.0e-10 67.8 65 55.4
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 5.3e-10 67.4 47 72.3
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 6.9e-10 67.0 61 60.7
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 9.0e-10 66.6 50 66.0
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 9.0e-10 66.6 58 60.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-09 65.9 43 74.4
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 2.0e-09 65.5 65 55.4
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.6e-09 65.1 61 52.5
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.6e-09 65.1 59 59.3
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 3.4e-09 64.7 40 77.5
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 3.4e-09 64.7 40 77.5
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.5e-09 64.3 65 55.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 5.8e-09 63.9 49 65.3
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 7.6e-09 63.5 65 52.3
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 1.0e-08 63.2 40 75.0
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 2.2e-08 62.0 52 55.8
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 2.9e-08 61.6 45 62.2
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 1.1e-07 59.7 49 57.1
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.4e-07 59.3 47 57.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.3e-07 56.6 44 65.9
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.1e-06 55.5 42 66.7
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.7e-06 55.1 51 60.8
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 6.0e-06 53.9 37 70.3
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.9e-06 53.5 46 63.0


User provided reference genes

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