Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 7.7e-250 866.7 440 100.0
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.8e-236 821.6 427 97.7
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 1.2e-170 603.6 430 75.1
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.0e-165 586.3 437 72.8
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.5e-160 570.1 431 72.9
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 7.4e-160 567.8 436 71.1
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 1.4e-158 563.5 398 75.4
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.4e-155 553.5 458 67.2
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.6e-154 548.5 436 70.4
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.5e-152 543.5 413 72.4
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.7e-151 540.0 436 69.5
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 5.0e-148 528.5 435 66.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.3e-145 519.6 415 67.2
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.0e-145 519.2 422 66.8
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.9e-145 518.8 399 68.9
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 1.1e-144 517.3 399 68.7
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.0e-144 516.5 399 68.4
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.3e-143 513.8 433 64.7
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 6.3e-143 511.5 434 65.2
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 7.0e-142 508.1 447 63.5
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 9.1e-142 507.7 418 66.7
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 3.5e-141 505.8 424 65.1
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 7.7e-141 504.6 439 64.2
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 7.7e-141 504.6 431 65.9
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 7.7e-141 504.6 424 65.6
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 1.0e-140 504.2 400 68.0
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 3.8e-140 502.3 437 63.4
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.1e-139 500.7 400 68.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 5.5e-139 498.4 413 65.9
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 7.2e-139 498.0 440 62.5
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 9.4e-139 497.7 392 68.1
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-138 496.9 426 65.3
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.7e-138 496.1 392 68.1
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.6e-138 495.7 393 68.4
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.3e-137 493.0 417 64.0
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 5.2e-137 491.9 432 65.0
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 6.7e-137 491.5 407 64.9
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 8.8e-137 491.1 424 64.2
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 3.3e-136 489.2 424 64.6
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 7.4e-136 488.0 436 62.6
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.7e-135 486.9 424 62.7
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 2.2e-135 486.5 460 60.9
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 2.8e-135 486.1 443 61.4
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 1.1e-134 484.2 429 62.7
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 1.8e-134 483.4 421 62.5
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.1e-134 482.6 448 61.4
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.1e-134 482.6 443 61.6
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.1e-134 482.3 424 62.7
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 5.3e-134 481.9 420 62.1
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.0e-133 479.9 433 60.5
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 2.6e-133 479.6 425 62.1
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 3.5e-133 479.2 416 63.2
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 3.5e-133 479.2 419 63.7
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 4.5e-133 478.8 433 63.7
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 7.7e-133 478.0 396 65.7
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.3e-132 477.2 433 61.7
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 6.5e-132 474.9 426 62.2
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 7.2e-131 471.5 395 65.6
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 9.4e-131 471.1 408 63.0
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 1.2e-130 470.7 408 62.7
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 1.4e-129 467.2 410 62.7
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 1.4e-129 467.2 405 63.5
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.8e-129 466.8 423 62.4
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 2.3e-129 466.5 423 62.4
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 2.3e-129 466.5 406 60.3
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 8.8e-129 464.5 413 61.5
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 1.2e-128 464.2 445 62.0
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.2e-128 464.2 403 63.8
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.5e-128 463.8 434 58.5
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.0e-128 463.4 318 71.1
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 2.0e-128 463.4 410 61.0
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 2.0e-128 463.4 419 60.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.6e-128 463.0 404 62.1
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 7.5e-128 461.5 423 60.8
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 7.5e-128 461.5 432 60.4
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.3e-127 460.7 400 60.8
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.3e-127 460.7 392 63.5
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 6.3e-127 458.4 420 60.2
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.1e-126 457.6 416 62.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.4e-126 456.4 402 60.2
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 2.4e-126 456.4 426 60.1
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.1e-126 455.7 405 61.5
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 4.1e-126 455.7 311 74.0
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 4.1e-126 455.7 422 59.7
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 5.3e-126 455.3 400 58.5
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 9.1e-126 454.5 402 60.9
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.2e-125 454.1 393 59.8
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 2.0e-125 453.4 431 60.6
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 2.0e-125 453.4 403 60.0
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 4.5e-125 452.2 399 58.1
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.0e-124 451.1 440 58.9
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.7e-124 450.3 404 60.9
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.7e-124 450.3 413 58.8
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.2e-124 449.9 409 58.7
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.8e-124 449.1 408 63.7
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.0e-124 448.7 372 65.1
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 6.5e-124 448.4 417 57.8
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 8.5e-124 448.0 401 58.9
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.5e-123 447.2 407 62.4
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.9e-123 446.8 428 59.6
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 5.5e-123 445.3 404 58.4
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.4e-123 444.5 413 57.1
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.6e-122 443.7 397 60.7
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.6e-122 443.7 405 59.0
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.1e-122 443.4 398 60.3
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.1e-122 443.4 405 58.8
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 4.7e-122 442.2 398 60.1
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 6.1e-122 441.8 397 60.5
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 6.1e-122 441.8 396 63.1
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.4e-121 440.7 387 61.0
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 1.8e-121 440.3 397 59.7
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.3e-121 439.9 399 60.2
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 4.0e-121 439.1 398 60.1
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.2e-121 438.7 426 56.8
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 5.7e-120 435.3 375 61.1
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 5.7e-120 435.3 398 59.5
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 9.8e-120 434.5 423 57.0
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 1.3e-119 434.1 398 58.8
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 2.2e-119 433.3 398 58.5
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 6.3e-119 431.8 392 60.2
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.4e-118 429.9 399 58.9
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 3.1e-118 429.5 397 58.9
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 3.1e-118 429.5 397 58.2
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.1e-118 429.5 429 54.5
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 3.1e-118 429.5 411 58.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 4.1e-118 429.1 371 60.6
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 7.0e-118 428.3 399 58.1
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 9.1e-118 427.9 416 56.2
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 9.1e-118 427.9 430 58.4
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 1.6e-117 427.2 416 55.8
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.0e-117 426.8 407 56.8
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.0e-117 426.8 427 58.1
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 2.3e-116 423.3 432 54.4
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 8.6e-116 421.4 343 65.6
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 8.0e-114 414.8 414 59.4
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 8.9e-113 411.4 396 56.6
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 9.8e-112 407.9 366 58.7
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 5.4e-110 402.1 396 56.1
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.6e-109 400.6 351 61.0
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.6e-109 400.6 402 55.5
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.1e-106 390.2 251 74.9
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.1e-106 390.2 401 54.9
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 4.0e-105 386.0 319 60.2
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 5.8e-104 382.1 444 50.9
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.2e-102 374.8 254 71.3
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 5.6e-91 339.0 428 45.8
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 2.9e-87 326.6 359 51.5
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 4.6e-85 319.3 301 52.5
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 5.8e-80 302.4 403 42.7
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 7.8e-77 292.0 393 48.1
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.3e-73 279.3 400 45.8
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 9.6e-67 258.5 356 43.5
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 3.8e-47 193.4 216 45.4
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 1.1e-46 191.8 129 76.0
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.4e-46 191.4 118 78.8
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.6e-45 188.0 266 44.4
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 3.9e-44 183.3 324 40.4
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 2.5e-38 164.1 117 65.0
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 1.3e-31 141.7 99 67.7
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.7e-29 134.0 264 33.7
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.6e-24 117.5 71 78.9
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.6e-24 117.5 71 78.9
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 3.5e-24 117.1 151 44.4
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 3.5e-24 117.1 151 44.4
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.2e-23 114.4 99 59.6
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 5.5e-22 109.8 141 44.7
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.6e-21 108.2 71 69.0
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.0e-19 101.3 63 74.6
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.4e-17 94.4 306 30.1
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 1.2e-16 92.0 260 27.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 1.6e-16 91.7 70 54.3
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 9.4e-14 82.4 52 73.1
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 8.8e-12 75.9 61 57.4
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 1.5e-06 58.5 147 38.1


User provided reference genes

Program Settings