Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.2e-102 376.7 210 100.0
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.8e-101 371.3 211 99.1
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.8e-45 185.7 129 79.8
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.4e-45 184.5 129 76.7
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 8.4e-45 184.5 129 74.4
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 8.4e-45 184.5 129 76.7
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 7.1e-44 181.4 129 76.0
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.6e-43 180.3 129 74.4
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.7e-43 179.5 129 74.4
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 3.5e-43 179.1 129 74.4
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 3.5e-43 179.1 129 74.4
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 6.0e-43 178.3 129 76.0
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.9e-43 177.9 129 72.1
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 7.9e-43 177.9 129 75.2
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.0e-42 177.6 129 74.4
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.0e-42 177.6 129 75.2
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.3e-42 177.2 129 74.4
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.8e-42 176.8 129 72.9
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.8e-42 176.8 129 79.8
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.3e-42 176.4 129 75.2
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.3e-42 176.4 129 72.9
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.0e-42 176.0 129 79.8
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 3.0e-42 176.0 129 74.4
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 3.9e-42 175.6 129 73.6
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 5.1e-42 175.3 129 74.4
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 6.7e-42 174.9 129 70.5
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 8.7e-42 174.5 129 72.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.1e-41 174.1 129 79.1
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.9e-41 173.3 129 72.1
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.9e-41 173.3 128 71.9
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.5e-41 172.9 129 73.6
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.5e-41 172.9 129 70.5
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 2.5e-41 172.9 129 71.3
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.3e-41 172.2 129 72.1
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.3e-41 172.2 129 72.9
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 4.3e-41 172.2 129 71.3
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 4.3e-41 172.2 130 72.3
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 5.6e-41 171.8 129 71.3
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 9.6e-41 171.0 130 72.3
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 9.6e-41 171.0 129 76.7
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.3e-40 170.6 130 72.3
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 2.8e-40 169.5 129 75.2
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 3.7e-40 169.1 129 69.0
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.7e-40 169.1 129 69.0
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 4.8e-40 168.7 129 71.3
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 4.8e-40 168.7 129 71.3
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 6.2e-40 168.3 129 69.0
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 6.2e-40 168.3 129 71.3
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 8.1e-40 167.9 129 74.4
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 8.1e-40 167.9 129 69.0
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 1.1e-39 167.5 129 70.5
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 3.1e-39 166.0 129 70.5
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 3.1e-39 166.0 129 72.9
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.1e-39 166.0 129 69.8
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 5.3e-39 165.2 129 71.3
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.2e-38 164.1 129 69.8
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 2.0e-38 163.3 129 68.2
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 3.4e-38 162.5 129 70.5
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 3.4e-38 162.5 129 67.4
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 4.5e-38 162.2 129 67.4
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 7.6e-38 161.4 129 69.0
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 7.6e-38 161.4 129 67.4
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.3e-37 160.6 129 76.0
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.7e-37 160.2 129 69.8
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.7e-37 160.2 129 68.2
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.2e-37 159.8 144 64.6
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 3.8e-37 159.1 129 76.0
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 3.8e-37 159.1 129 69.8
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 8.4e-37 157.9 129 73.6
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 1.4e-36 157.1 127 70.1
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.9e-36 156.8 129 77.5
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 1.9e-36 156.8 129 73.6
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.9e-36 156.8 129 65.9
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.5e-36 156.4 129 64.3
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 4.2e-36 155.6 129 69.0
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.6e-35 153.7 129 62.8
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 2.1e-35 153.3 130 68.5
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.8e-34 150.2 130 65.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.8e-34 150.2 129 65.9
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 2.3e-34 149.8 129 62.8
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 6.7e-34 148.3 129 73.6
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 6.7e-34 148.3 129 72.9
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 6.7e-34 148.3 129 73.6
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 6.7e-34 148.3 129 73.6
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 6.7e-34 148.3 129 73.6
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 8.7e-34 147.9 129 73.6
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 1.5e-33 147.1 129 64.3
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.5e-33 146.4 129 74.4
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-33 146.4 129 74.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 2.5e-33 146.4 129 74.4
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.5e-33 146.4 129 74.4
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 2.5e-33 146.4 129 74.4
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.3e-33 146.0 129 65.1
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 3.3e-33 146.0 129 63.6
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 4.3e-33 145.6 129 70.5
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.3e-33 145.6 130 57.7
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.3e-33 145.6 130 57.7
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 5.7e-33 145.2 129 73.6
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 9.6e-33 144.4 129 72.1
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.3e-32 144.1 129 71.3
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 1.3e-32 144.1 129 69.8
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 2.1e-32 143.3 129 68.2
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.8e-32 142.9 129 72.1
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 3.7e-32 142.5 129 72.1
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.1e-31 141.0 121 65.3
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.4e-31 140.6 129 70.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 1.8e-31 140.2 129 69.8
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 1.8e-31 140.2 129 69.8
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.4e-31 139.8 129 62.8
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 4.1e-31 139.0 77 88.3
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 5.3e-31 138.7 129 70.5
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.3e-31 138.7 129 62.0
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 5.3e-31 138.7 129 62.0
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 9.0e-31 137.9 129 61.2
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.5e-30 137.1 129 68.2
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.0e-30 136.7 129 70.5
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 3.4e-30 136.0 129 69.0
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.8e-30 135.2 129 56.6
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.0e-29 134.4 129 65.1
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.8e-29 132.5 129 65.1
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 5.0e-29 132.1 129 64.3
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.0e-29 132.1 129 68.2
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 8.4e-29 131.3 129 68.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.9e-28 130.2 129 57.4
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.5e-28 129.8 129 64.3
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 4.2e-28 129.0 129 57.4
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 5.5e-28 128.6 129 67.4
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 5.5e-28 128.6 129 67.4
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 7.1e-28 128.3 129 66.7
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.1e-28 128.3 129 56.6
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 7.1e-28 128.3 129 56.6
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 7.1e-28 128.3 129 66.7
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 9.3e-28 127.9 129 68.2
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 9.3e-28 127.9 129 56.6
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 2.7e-27 126.3 129 62.8
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 2.7e-27 126.3 129 66.7
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.5e-27 125.9 129 55.0
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.8e-26 123.6 129 62.0
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.8e-26 123.6 129 58.1
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 3.9e-26 122.5 129 62.0
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 5.1e-26 122.1 129 57.4
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.5e-25 119.8 129 60.5
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 4.3e-25 119.0 188 41.5
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.7e-25 118.6 129 59.7
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 5.7e-25 118.6 129 59.7
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 5.7e-25 118.6 129 59.7
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.6e-24 117.1 71 78.9
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 2.2e-24 116.7 129 61.2
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 3.7e-24 115.9 77 72.7
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.4e-23 113.2 129 59.7
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 3.1e-23 112.8 129 62.8
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 4.1e-23 112.5 129 57.4
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.2e-22 110.9 130 47.7
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 8.5e-21 104.8 59 84.7
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.9e-20 103.6 48 100.0
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 6.1e-19 98.6 130 47.7
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 4.5e-14 82.4 129 38.0
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 1.5e-09 67.4 102 48.0
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 4.4e-09 65.9 68 55.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 5.9e-06 55.5 73 47.9


User provided reference genes

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