Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 7.8e-148 528.5 313 100.0
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 7.8e-148 528.5 313 100.0
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 2.9e-118 430.3 318 75.2
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 2.7e-116 423.7 311 75.2
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 2.7e-108 397.1 267 81.6
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 1.3e-105 388.3 262 80.2
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 1.1e-104 385.2 312 70.2
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 4.1e-104 383.3 323 68.1
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 4.5e-103 379.8 327 66.4
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 4.5e-103 379.8 317 66.9
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 1.0e-102 378.6 327 66.1
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.0e-102 378.6 314 64.0
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.3e-102 378.3 314 65.6
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 2.2e-102 377.5 340 61.8
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 3.8e-102 376.7 326 68.7
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 5.0e-102 376.3 257 77.0
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 5.0e-102 376.3 314 65.6
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 6.5e-102 375.9 343 64.4
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 1.1e-101 375.2 323 69.0
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.4e-101 374.8 327 65.7
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.9e-101 374.4 259 74.9
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 1.9e-101 374.4 259 74.9
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 2.5e-101 374.0 264 73.1
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 3.2e-101 373.6 263 76.4
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 1.2e-100 371.7 327 70.0
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 1.6e-100 371.3 329 65.0
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 2.1e-100 370.9 301 69.1
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 2.7e-100 370.5 327 64.2
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 3.5e-100 370.2 326 68.1
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 1.8e-99 367.9 331 71.0
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 2.3e-99 367.5 259 71.8
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 3.0e-99 367.1 259 71.8
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 5.1e-99 366.3 312 68.3
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 5.1e-99 366.3 324 63.0
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 6.7e-99 365.9 258 73.3
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 8.7e-99 365.5 329 70.5
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 8.7e-99 365.5 252 76.2
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 1.1e-98 365.2 263 73.4
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 1.5e-98 364.8 320 64.7
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.9e-98 364.4 324 62.7
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.9e-98 364.4 333 67.9
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 7.4e-98 362.5 328 61.6
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 7.4e-98 362.5 222 81.5
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 1.3e-97 361.7 316 65.2
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 2.8e-97 360.5 316 68.7
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 2.8e-97 360.5 257 71.6
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 4.8e-97 359.8 318 63.8
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 1.4e-96 358.2 314 63.1
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 4.1e-96 356.7 313 63.3
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.2e-95 355.1 314 62.7
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 2.6e-95 354.0 262 69.8
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 2.9e-94 350.5 262 69.8
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 2.9e-94 350.5 314 64.0
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 3.8e-94 350.1 322 60.6
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 3.8e-94 350.1 320 61.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 1.9e-93 347.8 240 75.4
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 1.9e-93 347.8 313 62.3
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 4.2e-93 346.7 263 67.7
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 4.2e-93 346.7 307 63.5
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 5.5e-93 346.3 251 70.5
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 2.7e-92 344.0 264 68.6
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 3.6e-92 343.6 242 74.8
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 4.6e-92 343.2 242 74.8
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 7.9e-92 342.4 264 73.5
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 7.9e-92 342.4 300 66.3
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 1.0e-91 342.0 299 65.2
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 3.9e-91 340.1 244 72.1
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.5e-90 338.2 239 72.8
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 4.3e-90 336.7 302 64.9
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 1.7e-89 334.7 295 65.8
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.8e-89 334.0 222 75.2
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 6.3e-89 332.8 245 75.1
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 6.9e-88 329.3 273 68.5
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 2.6e-87 327.4 338 55.0
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 2.6e-87 327.4 243 74.1
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 3.4e-87 327.0 250 69.2
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 4.5e-87 326.6 245 71.4
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.3e-86 325.1 319 58.3
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 1.7e-86 324.7 245 68.6
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 2.2e-86 324.3 308 63.6
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 2.9e-86 323.9 240 69.6
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 3.8e-86 323.6 250 68.0
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 5.0e-86 323.2 304 59.5
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 5.0e-86 323.2 304 59.5
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 5.0e-86 323.2 304 59.5
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 6.5e-86 322.8 248 68.5
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 8.5e-86 322.4 234 70.5
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 1.1e-85 322.0 307 59.3
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 1.1e-85 322.0 307 59.3
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 1.4e-85 321.6 249 67.9
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.9e-85 321.2 331 55.6
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 5.5e-85 319.7 240 75.0
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 1.6e-84 318.2 263 63.5
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 2.6e-82 310.8 316 56.0
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 7.4e-82 309.3 313 56.9
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 2.6e-79 300.8 174 87.9
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.0e-78 298.9 271 57.2
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 4.2e-77 293.5 245 64.9
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 5.7e-74 283.1 315 54.9
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 4.4e-58 230.3 168 69.0
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 6.3e-57 226.5 169 71.6
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 4.4e-50 203.8 317 47.0
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 3.5e-47 194.1 252 44.8
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.4e-40 172.2 214 44.4
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 3.1e-35 154.5 218 41.3
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 2.6e-34 151.4 184 47.3
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 7.6e-26 123.2 256 34.8
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 2.1e-23 115.2 252 34.5
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 6.0e-23 113.6 172 37.2
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 3.0e-22 111.3 180 34.4
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.2e-20 105.9 84 61.9
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 5.8e-18 97.1 56 87.5
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 5.8e-18 97.1 56 87.5
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 1.3e-17 95.9 54 85.2
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 6.4e-17 93.6 55 83.6
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 1.4e-16 92.4 53 84.9
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 4.2e-16 90.9 64 76.6
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 5.3e-11 73.9 55 63.6
PGR142G2334 Punica granatum HOM05D007456 ORTHO05D009411 7.6e-10 70.1 51 62.7
Cc11_g03880 Coffea canephora HOM05D007456 ORTHO05D009411 9.9e-10 69.7 50 62.0
Lj1C1032G4 Lonicera japonica HOM05D007456 ORTHO05D009411 1.3e-09 69.3 51 60.8
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 8.4e-09 66.6 218 26.1
HPP92_008353 Vanilla planifolia HOM05D006705 ORTHO05D008179 5.4e-08 63.9 51 54.9
CDE02G0006 Ceratophyllum demersum HOM05D007456 ORTHO05D009411 9.3e-08 63.2 51 56.9
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 1.6e-07 62.4 37 81.1
MBI13_g23885_MAGBIO Magnolia biondii HOM05D007456 ORTHO05D009411 1.8e-06 58.9 91 33.0
Lsat_1_v5_gn_4_134121 Lactuca sativa HOM05D007456 ORTHO05D009411 5.1e-06 57.4 56 50.0
Sed0026452 Sechium edule HOM05D007456 ORTHO05D009411 6.7e-06 57.0 69 43.5
TAR375G0715 Trochodendron aralioides HOM05D007456 ORTHO05D009411 8.7e-06 56.6 68 42.6
TAR375G0927 Trochodendron aralioides HOM05D007456 ORTHO05D009411 8.7e-06 56.6 68 42.6


User provided reference genes

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