Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 5.8e-161 570.9 290 100.0
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.0e-109 400.6 263 79.1
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 4.3e-108 395.2 268 77.2
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.3e-104 383.6 268 75.4
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 8.5e-96 354.4 262 72.5
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 5.5e-95 351.7 265 71.7
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.2e-94 350.5 268 69.0
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.7e-94 349.4 268 69.4
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 6.9e-90 334.7 269 65.1
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 9.1e-90 334.3 269 68.0
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 1.2e-89 334.0 328 59.8
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.2e-87 325.5 269 65.1
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 5.5e-87 325.1 269 63.2
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 9.4e-87 324.3 269 64.7
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.2e-86 323.9 269 65.8
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-86 323.6 269 66.2
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 2.1e-86 323.2 308 62.0
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 2.1e-86 323.2 268 63.8
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 2.1e-86 323.2 268 63.8
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 2.7e-86 322.8 269 66.2
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 3.6e-86 322.4 269 63.6
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 6.1e-86 321.6 268 64.2
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 7.9e-86 321.2 268 66.0
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 7.9e-86 321.2 269 65.8
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 8.8e-85 317.8 271 63.8
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 1.5e-84 317.0 270 63.3
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 4.4e-84 315.5 270 64.4
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 7.4e-84 314.7 269 62.8
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 7.4e-84 314.7 269 63.2
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 7.4e-84 314.7 246 68.3
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.3e-83 313.9 269 62.8
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 2.2e-83 313.2 246 68.7
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 3.7e-83 312.4 294 58.8
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 6.3e-83 311.6 243 69.1
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 8.2e-83 311.2 269 63.6
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 1.4e-82 310.5 269 62.5
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 1.4e-82 310.5 286 61.2
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 2.4e-82 309.7 268 61.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.4e-82 309.7 269 62.5
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 3.1e-82 309.3 269 62.1
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 7.0e-82 308.1 269 61.0
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 1.6e-81 307.0 270 62.6
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.5e-81 305.4 286 61.2
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 5.9e-81 305.1 265 62.6
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 7.7e-81 304.7 265 63.0
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.7e-80 303.5 278 59.4
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.8e-80 302.4 270 60.0
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.1e-79 300.8 264 62.5
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.5e-79 300.4 269 61.3
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.5e-79 300.4 269 61.3
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.5e-79 300.4 269 61.3
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.2e-79 299.3 269 61.3
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 4.2e-79 298.9 269 60.6
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 4.2e-79 298.9 303 55.8
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 9.4e-79 297.7 276 58.3
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.6e-78 295.8 268 60.4
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.0e-77 294.3 267 61.0
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.0e-77 292.7 268 59.3
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 8.8e-77 291.2 268 59.3
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 1.2e-76 290.8 268 60.8
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 4.4e-76 288.9 268 60.1
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.1e-74 284.3 268 59.0
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 1.4e-74 283.9 270 58.1
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.4e-74 283.9 268 59.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 1.4e-74 283.9 268 59.0
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 3.1e-74 282.7 268 59.0
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 3.1e-74 282.7 274 55.8
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 5.3e-74 282.0 262 58.4
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 7.0e-74 281.6 268 58.6
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.2e-73 280.8 268 58.2
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 2.0e-73 280.0 268 58.6
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 5.9e-73 278.5 267 56.6
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 7.7e-73 278.1 268 58.2
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 5.5e-71 271.9 245 59.2
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 9.4e-71 271.2 268 57.1
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 1.0e-69 267.7 268 55.6
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.0e-69 267.7 268 55.6
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 1.0e-69 267.7 274 53.6
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.4e-69 267.3 268 56.0
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 2.3e-69 266.5 263 56.3
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 4.0e-69 265.8 225 64.0
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 6.8e-69 265.0 268 56.3
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 8.8e-69 264.6 268 54.1
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 8.8e-69 264.6 278 54.7
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 1.2e-68 264.2 268 55.2
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 1.5e-68 263.8 274 54.4
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 9.8e-68 261.2 268 57.1
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.7e-67 259.2 268 54.1
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 1.8e-66 256.9 269 53.9
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 3.1e-66 256.1 271 53.5
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 4.1e-66 255.8 274 52.2
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 7.0e-66 255.0 268 56.3
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.6e-65 253.8 278 52.9
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 1.7e-64 250.4 235 60.9
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 5.5e-63 245.4 274 52.6
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 9.5e-63 244.6 273 52.0
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.4e-60 236.1 241 53.5
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 7.5e-60 235.0 268 50.7
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.9e-59 232.3 278 48.2
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 1.1e-58 231.1 242 51.7
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.8e-58 230.3 244 51.2
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 7.0e-58 228.4 272 48.9
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.2e-57 227.6 273 46.9
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 1.6e-57 227.3 272 48.2
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 1.6e-57 227.3 272 48.2
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 2.0e-57 226.9 244 51.6
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 2.0e-57 226.9 272 48.2
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 4.5e-57 225.7 272 48.2
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 7.8e-57 224.9 276 47.5
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 7.8e-57 224.9 276 47.5
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 6.6e-56 221.9 244 50.4
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-55 220.7 268 47.4
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.5e-55 220.7 272 50.0
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 4.3e-55 219.2 247 49.0
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 5.6e-55 218.8 247 49.0
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 7.3e-55 218.4 235 53.6
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 1.6e-54 217.2 247 50.2
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 2.1e-54 216.9 246 48.4
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 8.0e-54 214.9 274 46.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 1.4e-53 214.2 225 52.4
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 4.0e-53 212.6 272 47.1
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 4.4e-52 209.1 282 45.0
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 5.7e-52 208.8 270 47.4
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 1.4e-50 204.1 273 45.4
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 1.4e-50 204.1 267 47.6
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.3e-48 196.8 273 44.0
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 5.6e-47 192.2 228 45.6
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 4.7e-46 189.1 287 43.2
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 1.5e-44 184.1 144 63.9
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 2.2e-43 180.3 276 42.4
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.1e-42 177.9 167 57.5
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.0e-41 173.7 126 71.4
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.3e-40 171.0 173 55.5
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.7e-40 170.6 278 39.9
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 5.0e-40 169.1 264 40.5
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.4e-34 150.2 251 41.0
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 5.6e-31 139.0 263 38.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 2.3e-24 117.1 105 62.9
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 5.1e-24 115.9 90 71.1
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 1.1e-23 114.8 97 63.9
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-20 104.8 107 57.9
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.4e-18 97.1 77 61.0
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 2.1e-17 94.0 82 59.8
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 3.0e-16 90.1 86 59.3
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 6.9e-13 79.0 139 38.8
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 9.0e-13 78.6 95 49.5
HanXRQChr09g0270771 Helianthus annuus HOM05D003625 ORTHO05D004382 2.1e-09 67.4 94 41.5
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.7e-09 67.0 45 73.3


User provided reference genes

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