Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019051 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D004078 1.7e-55 219.2 114 100.0
CSS0034191 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D004078 1.4e-41 172.9 164 61.6
CSS0049437 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D004078 2.6e-40 168.7 175 57.7
CSS0019719 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D004078 5.4e-30 134.4 188 47.3
CSS0029875 Camellia sinensis var. sinensis HOM05D000189 ORTHO05D004078 2.6e-24 115.5 97 63.9
Actinidia06583 Actinidia chinensis HOM05D000189 ORTHO05D004078 5.8e-24 114.4 97 62.9
Actinidia20040 Actinidia chinensis HOM05D000189 ORTHO05D004078 1.7e-23 112.8 97 62.9
Hma1.2p1_0935F.1_g238590 Hydrangea macrophylla HOM05D000189 ORTHO05D004078 1.7e-23 112.8 98 61.2
Dinv30350 Davidia involucrata HOM05D000189 ORTHO05D004078 4.9e-23 111.3 98 59.2
Rhsim10G0127200 Rhododendron simsii HOM05D000189 ORTHO05D004078 1.4e-22 109.8 97 59.8
vmacro12752 Vaccinium macrocarpon HOM05D000189 ORTHO05D004078 1.4e-22 109.8 97 59.8
CiPaw.04G079000 Carya illinoinensis HOM05D000189 ORTHO05D004078 5.4e-22 107.8 98 56.1
MSTRG.2767 Avicennia marina HOM05D000189 ORTHO05D004078 9.3e-22 107.1 98 58.2
MSTRG.23492 Avicennia marina HOM05D000189 ORTHO05D004078 1.6e-21 106.3 98 57.1
Cpa.g.sc37.14 Carica papaya HOM05D000189 ORTHO05D004078 1.6e-21 106.3 98 56.1
TAR625G1514 Trochodendron aralioides HOM05D000189 ORTHO05D004078 2.1e-21 105.9 98 58.2
Aqoxy6G00326 Aquilegia oxysepala HOM05D000189 ORTHO05D004078 2.7e-21 105.5 98 56.1
Lj2A617T13 Lonicera japonica HOM05D000189 ORTHO05D004078 2.7e-21 105.5 98 56.1
QL10p041044 Quercus lobata HOM05D000189 ORTHO05D004078 2.7e-21 105.5 98 56.1
GSVIVG01022347001 Vitis vinifera HOM05D000189 ORTHO05D004078 2.7e-21 105.5 98 57.1
Cfa002195 Carpinus fangiana HOM05D000189 ORTHO05D004078 4.6e-21 104.8 98 56.1
FAN28G2821 Fragaria x ananassa HOM05D000189 ORTHO05D004078 4.6e-21 104.8 103 53.4
Manes.13G078300 Manihot esculenta HOM05D000189 ORTHO05D004078 4.6e-21 104.8 98 57.1
Nn1g08980 Nelumbo nucifera HOM05D000189 ORTHO05D004078 4.6e-21 104.8 98 56.1
RcHm_v2.0_Chr2g0122641 Rosa chinensis HOM05D000189 ORTHO05D004078 4.6e-21 104.8 98 55.1
TWI75G0993 Tripterygium wilfordii HOM05D000189 ORTHO05D004078 4.6e-21 104.8 97 55.7
TWI79G1269 Tripterygium wilfordii HOM05D000189 ORTHO05D004078 6.0e-21 104.4 97 56.7
Nn5g28428 Nelumbo nucifera HOM05D000189 ORTHO05D004078 7.8e-21 104.0 98 56.1
PGR102G2655 Punica granatum HOM05D000189 ORTHO05D004078 7.8e-21 104.0 98 54.1
SalBow1G5355 Salvia bowleyana HOM05D000189 ORTHO05D004078 7.8e-21 104.0 55 85.5
FvH4_1g25000 Fragaria vesca HOM05D000189 ORTHO05D004078 1.0e-20 103.6 98 55.1
FAN19G0294 Fragaria x ananassa HOM05D000189 ORTHO05D004078 1.0e-20 103.6 98 55.1
FAN26G2393 Fragaria x ananassa HOM05D000189 ORTHO05D004078 1.0e-20 103.6 98 55.1
SGA_v2.0_scaffold54G19614 Striga asiatica HOM05D000189 ORTHO05D004078 1.0e-20 103.6 87 62.1
Cc07_g19320 Coffea canephora HOM05D000189 ORTHO05D004078 1.3e-20 103.2 97 54.6
Lj2A423G50 Lonicera japonica HOM05D000189 ORTHO05D004078 1.3e-20 103.2 98 55.1
Eucgr.H05117 Eucalyptus grandis HOM05D000189 ORTHO05D004078 1.7e-20 102.8 99 51.5
MD15G1136000 Malus domestica HOM05D000189 ORTHO05D004078 1.7e-20 102.8 98 54.1
Potri.007G100200 Populus trichocarpa HOM05D000189 ORTHO05D004078 1.7e-20 102.8 98 52.0
Oeu011025.1 Olea europaea HOM05D000189 ORTHO05D004078 3.0e-20 102.1 98 54.1
PGR119G2502 Punica granatum HOM05D000189 ORTHO05D004078 3.9e-20 101.7 55 85.5
Prupe.4G277200 Prunus persica HOM05D000189 ORTHO05D004078 5.1e-20 101.3 98 53.1
Sabra07G0083100 Salix brachista HOM05D000189 ORTHO05D004078 5.1e-20 101.3 114 48.2
Sed0023682 Sechium edule HOM05D000189 ORTHO05D004078 5.1e-20 101.3 98 54.1
THA.LOC104804585 Tarenaya hassleriana HOM05D000189 ORTHO05D004078 5.1e-20 101.3 98 54.1
Migut.H00820 Erythranthe guttata HOM05D000189 ORTHO05D004078 6.6e-20 100.9 98 54.1
CiPaw.03G117600 Carya illinoinensis HOM05D000189 ORTHO05D004078 8.7e-20 100.5 98 53.1
Haze_25368 Corylus avellana HOM05D000189 ORTHO05D004078 8.7e-20 100.5 55 83.6
Nitab4.5_0005825g0010 Nicotiana tabacum HOM05D000189 ORTHO05D004078 8.7e-20 100.5 98 52.0
CAN.G7.11 Capsicum annuum HOM05D000189 ORTHO05D004078 1.5e-19 99.8 98 52.0
HanXRQChr10g0297801 Helianthus annuus HOM05D000189 ORTHO05D004078 1.5e-19 99.8 55 81.8
Oeu042323.1 Olea europaea HOM05D000189 ORTHO05D004078 1.5e-19 99.8 55 81.8
Ciclev10001136m.g Citrus clementina HOM05D000189 ORTHO05D004078 1.9e-19 99.4 98 54.1
unitig_899.g15152 Utricularia gibba HOM05D000189 ORTHO05D004078 1.9e-19 99.4 101 52.5
HPP92_006887 Vanilla planifolia HOM05D000189 ORTHO05D004078 1.9e-19 99.4 55 85.5
Lsat_1_v5_gn_5_146840 Lactuca sativa HOM05D000189 ORTHO05D004078 2.5e-19 99.0 55 78.2
Os02g0554100 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D004078 2.5e-19 99.0 97 53.6
Peaxi162Scf00658g00515 Petunia axillaris HOM05D000189 ORTHO05D004078 2.5e-19 99.0 98 53.1
CsaV3_4G030770 Cucumis sativus L. HOM05D000189 ORTHO05D004078 3.3e-19 98.6 98 53.1
DCAR_009595 Daucus carota HOM05D000189 ORTHO05D004078 3.3e-19 98.6 55 81.8
FAN23G2343 Fragaria x ananassa HOM05D000189 ORTHO05D004078 4.3e-19 98.2 98 53.1
Os04g0435700 Oryza sativa ssp. japonica HOM05D000189 ORTHO05D004078 4.3e-19 98.2 55 80.0
CDE08G1310 Ceratophyllum demersum HOM05D000189 ORTHO05D004078 5.6e-19 97.8 98 52.0
ClCG04G001880 Citrullus lanatus HOM05D000189 ORTHO05D004078 5.6e-19 97.8 55 81.8
DCAR_019990 Daucus carota HOM05D000189 ORTHO05D004078 5.6e-19 97.8 55 83.6
MELO3C008944.2 Cucumis melo HOM05D000189 ORTHO05D004078 7.3e-19 97.4 98 53.1
Duzib147G0323 Durio zibethinus HOM05D000189 ORTHO05D004078 7.3e-19 97.4 56 76.8
CDE02G3989 Ceratophyllum demersum HOM05D000189 ORTHO05D004078 1.3e-18 96.7 98 52.0
Nitab4.5_0000415g0020 Nicotiana tabacum HOM05D000189 ORTHO05D004078 1.6e-18 96.3 55 76.4
Sopen05g015830 Solanum pennellii HOM05D000189 ORTHO05D004078 1.6e-18 96.3 98 51.0
Hund07229 Selenicereus undatus HOM05D000189 ORTHO05D004078 2.1e-18 95.9 97 53.6
Zm00001eb082500 Zea mays HOM05D000189 ORTHO05D004078 2.1e-18 95.9 55 78.2
Psat7g044560 Pisum sativum HOM05D000189 ORTHO05D004078 2.8e-18 95.5 53 79.2
THA.LOC104819349 Tarenaya hassleriana HOM05D000189 ORTHO05D004078 2.8e-18 95.5 97 53.6
HPP92_005664 Vanilla planifolia HOM05D000189 ORTHO05D004078 2.8e-18 95.5 98 53.1
Duzib264G1077 Durio zibethinus HOM05D000189 ORTHO05D004078 3.6e-18 95.1 98 51.0
Sabra18G0053000 Salix brachista HOM05D000189 ORTHO05D004078 3.6e-18 95.1 54 79.6
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 3.6e-18 95.1 54 79.6
Thecc.01G139000 Theobroma cacao HOM05D000189 ORTHO05D004078 3.6e-18 95.1 98 50.0
AL8G41090 Arabidopsis lyrata HOM05D000189 ORTHO05D004078 4.8e-18 94.7 55 80.0
AT5G63860 Arabidopsis thaliana HOM05D000189 ORTHO05D004078 4.8e-18 94.7 55 80.0
Ca_16987_v3 Cicer arietinum L. HOM05D000189 ORTHO05D004078 4.8e-18 94.7 55 78.2
Lalb_Chr08g0238151 Lupinus albus HOM05D000189 ORTHO05D004078 4.8e-18 94.7 55 80.0
CANSAT01G1256 Cannabis sativa HOM05D000189 ORTHO05D004078 6.2e-18 94.4 98 51.0
Glyma.04G209600 Glycine max HOM05D000189 ORTHO05D004078 6.2e-18 94.4 98 50.0
Oeu037861.2 Olea europaea HOM05D000189 ORTHO05D004078 6.2e-18 94.4 55 78.2
VMungo1309G1002 Vigna mungo HOM05D000189 ORTHO05D004078 6.2e-18 94.4 98 51.0
Carub.0008s2463 Capsella rubella HOM05D000189 ORTHO05D004078 8.1e-18 94.0 55 78.2
ECA234G0012 Erigeron canadensis HOM05D000189 ORTHO05D004078 8.1e-18 94.0 55 78.2
COL.COLO4_12068 Corchorus olitorius HOM05D000189 ORTHO05D004078 1.1e-17 93.6 55 76.4
Psat5g059160 Pisum sativum HOM05D000189 ORTHO05D004078 1.1e-17 93.6 98 51.0
Sc16g0009570 Simmondsia chinensis HOM05D000189 ORTHO05D004078 1.1e-17 93.6 96 51.0
Ah.06g191130 Amaranthus hybridus HOM05D000189 ORTHO05D004078 1.4e-17 93.2 55 78.2
Lj1g0004532 Lotus japonicus HOM05D000189 ORTHO05D004078 1.4e-17 93.2 55 74.5
TPR.G33573 Trifolium pratense HOM05D000189 ORTHO05D004078 1.4e-17 93.2 55 78.2
BcaNung04634 Brassica carinata HOM05D000189 ORTHO05D004078 2.4e-17 92.4 97 52.6
BcaNung04639 Brassica carinata HOM05D000189 ORTHO05D004078 2.4e-17 92.4 97 52.6
VMungo0251G3467 Vigna mungo HOM05D000189 ORTHO05D004078 2.4e-17 92.4 55 74.5
A09p08430 Brassica napus HOM05D000189 ORTHO05D004078 3.1e-17 92.0 97 51.5
C09p09540 Brassica napus HOM05D000189 ORTHO05D004078 3.1e-17 92.0 97 51.5
BraA09t36493Z Brassica rapa HOM05D000189 ORTHO05D004078 3.1e-17 92.0 97 51.5
Gohir.D10G107800 Gossypium hirsutum HOM05D000189 ORTHO05D004078 3.1e-17 92.0 98 48.0
Lalb_Chr11g0068661 Lupinus albus HOM05D000189 ORTHO05D004078 3.1e-17 92.0 55 76.4
TPR.G37360 Trifolium pratense HOM05D000189 ORTHO05D004078 3.1e-17 92.0 55 74.5
CARHR277760 Cardamine hirsuta HOM05D000189 ORTHO05D004078 4.0e-17 91.7 55 78.2
Thhalv10004234m.g Eutrema salsugineum HOM05D000189 ORTHO05D004078 4.0e-17 91.7 99 49.5
Gohir.A10G068120 Gossypium hirsutum HOM05D000189 ORTHO05D004078 4.0e-17 91.7 55 72.7
Gorai.011G118200 Gossypium raimondii HOM05D000189 ORTHO05D004078 4.0e-17 91.7 55 72.7
BcaB02g09771 Brassica carinata HOM05D000189 ORTHO05D004078 5.3e-17 91.3 55 74.5
A02p43030 Brassica napus HOM05D000189 ORTHO05D004078 5.3e-17 91.3 55 76.4
BraA02t09225Z Brassica rapa HOM05D000189 ORTHO05D004078 5.3e-17 91.3 55 76.4
Medtr3g096780 Medicago truncatula HOM05D000189 ORTHO05D004078 5.3e-17 91.3 98 50.0
PSO017G3690 Papaver somniferum HOM05D000189 ORTHO05D004078 5.3e-17 91.3 98 51.0
PSO170G6467 Papaver somniferum HOM05D000189 ORTHO05D004078 5.3e-17 91.3 98 51.0
Glyma.06G156400 Glycine max HOM05D000189 ORTHO05D004078 6.9e-17 90.9 98 50.0
Aa31LG1G18040 Aethionema arabicum HOM05D000189 ORTHO05D004078 9.0e-17 90.5 99 49.5
BcaC01g02636 Brassica carinata HOM05D000189 ORTHO05D004078 9.0e-17 90.5 55 74.5
A06p30470 Brassica napus HOM05D000189 ORTHO05D004078 9.0e-17 90.5 55 74.5
C03p62590 Brassica napus HOM05D000189 ORTHO05D004078 9.0e-17 90.5 55 74.5
BolC3t18516H Brassica oleracea HOM05D000189 ORTHO05D004078 9.0e-17 90.5 55 74.5
BraA06t25996Z Brassica rapa HOM05D000189 ORTHO05D004078 9.0e-17 90.5 55 74.5
Phvul.009G153900 Phaseolus vulgaris HOM05D000189 ORTHO05D004078 9.0e-17 90.5 98 50.0
ATR0584G009 Amborella trichopoda HOM05D000189 ORTHO05D004078 1.2e-16 90.1 97 49.5
Glyma.05G194400 Glycine max HOM05D000189 ORTHO05D004078 1.2e-16 90.1 55 72.7
Phvul.002G274700 Phaseolus vulgaris HOM05D000189 ORTHO05D004078 1.2e-16 90.1 55 72.7
Sp2g26920 Schrenkiella parvula HOM05D000189 ORTHO05D004078 1.2e-16 90.1 98 49.0
Gohir.A09G006600 Gossypium hirsutum HOM05D000189 ORTHO05D004078 1.5e-16 89.7 55 72.7
Lj4g0027354 Lotus japonicus HOM05D000189 ORTHO05D004078 1.5e-16 89.7 55 72.7
Ca_17621_v3 Cicer arietinum L. HOM05D000189 ORTHO05D004078 2.0e-16 89.4 55 70.9
AUR62000528 Chenopodium quinoa HOM05D000189 ORTHO05D004078 2.6e-16 89.0 55 72.7
AUR62006875 Chenopodium quinoa HOM05D000189 ORTHO05D004078 2.6e-16 89.0 55 72.7
Gohir.D09G005800 Gossypium hirsutum HOM05D000189 ORTHO05D004078 3.4e-16 88.6 55 72.7
Gorai.006G007400 Gossypium raimondii HOM05D000189 ORTHO05D004078 3.4e-16 88.6 55 72.7
Sabra18G0053200 Salix brachista HOM05D003605 ORTHO05D004078 3.4e-16 88.6 45 84.4
Sabra18G0053400 Salix brachista HOM05D003605 ORTHO05D004078 3.4e-16 88.6 45 84.4
Sabra18G0053700 Salix brachista HOM05D003605 ORTHO05D004078 3.4e-16 88.6 45 84.4
arahy.Tifrunner.gnm1.ann1.F1F8UR Arachis hypogaea HOM05D000189 ORTHO05D004078 5.8e-16 87.8 55 69.1
Ah.04g157800 Amaranthus hybridus HOM05D000189 ORTHO05D004078 9.9e-16 87.0 55 72.7
Lalb_Chr12g0203031 Lupinus albus HOM05D000189 ORTHO05D004078 9.9e-16 87.0 55 69.1
Medtr0095s0070 Medicago truncatula HOM05D000189 ORTHO05D004078 9.9e-16 87.0 55 69.1
Medtr8g094410 Medicago truncatula HOM05D000189 ORTHO05D004078 9.9e-16 87.0 55 69.1
Glyma.08G002201 Glycine max HOM05D000189 ORTHO05D004078 2.9e-15 85.5 55 69.1
SEGI_05648 Sequoiadendron giganteum HOM05D000189 ORTHO05D004078 2.9e-15 85.5 53 71.7
Pp3c3_15300 Physcomitrium patens HOM05D000189 ORTHO05D004078 4.9e-15 84.7 53 69.8
AagrBONN_evm.TU.Sc2ySwM_228.657 Anthoceros agrestis HOM05D000189 ORTHO05D004078 6.4e-15 84.3 55 69.1
SMO358G0353 Selaginella moellendorffii HOM05D000189 ORTHO05D004078 1.1e-14 83.6 55 69.1
arahy.Tifrunner.gnm1.ann1.56CBQX Arachis hypogaea HOM05D000189 ORTHO05D004078 1.4e-14 83.2 55 69.1
arahy.Tifrunner.gnm1.ann1.WN2TW1 Arachis hypogaea HOM05D000189 ORTHO05D004078 1.4e-14 83.2 55 69.1
EL10Ac8g19816 Beta vulgaris HOM05D000189 ORTHO05D004078 5.4e-14 81.3 55 70.9
Mapoly0023s0125 Marchantia polymorpha HOM05D000189 ORTHO05D004078 5.4e-14 81.3 53 67.9
Pp3c10_2230 Physcomitrium patens HOM05D000189 ORTHO05D004078 9.3e-14 80.5 48 70.8
CBR_g41650 Chara braunii HOM05D000189 ORTHO05D004078 3.5e-13 78.6 55 63.6
Atru.chr4.1006 Acer truncatum HOM05D000189 ORTHO05D004078 2.1e-10 69.3 33 90.9
PSO832G2566 Papaver somniferum HOM05D000189 ORTHO05D008437 3.2e-06 55.5 52 46.2
HanXRQChr03g0090141 Helianthus annuus HOM05D000189 ORTHO05D000474 7.1e-06 54.3 56 48.2
CAN.G1850.2 Capsicum annuum HOM05D000189 ORTHO05D000474 9.3e-06 53.9 56 48.2
Cc01_g05540 Coffea canephora HOM05D000189 ORTHO05D000474 9.3e-06 53.9 56 50.0
Peaxi162Scf00004g04116 Petunia axillaris HOM05D000189 ORTHO05D000474 9.3e-06 53.9 56 48.2
Solyc11g065120.3 Solanum lycopersicum HOM05D000189 ORTHO05D000474 9.3e-06 53.9 56 48.2
Sopen11g024860 Solanum pennellii HOM05D000189 ORTHO05D000474 9.3e-06 53.9 56 48.2


User provided reference genes

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