Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1766.9 962 100.0
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1438.3 970 81.1
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1437.9 961 80.0
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1349.0 970 77.4
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1337.0 990 74.6
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1290.4 965 70.9
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1283.9 973 72.5
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1263.1 964 71.2
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1236.5 947 70.5
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1232.2 960 69.6
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1231.9 988 67.9
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1226.1 988 67.6
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1224.2 966 69.2
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1218.4 971 69.2
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1217.6 969 68.5
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1208.0 1000 66.6
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1206.0 971 67.3
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 0.0e+00 1186.0 964 65.0
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1183.3 1049 64.1
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1181.0 961 67.8
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1177.5 981 66.9
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1174.8 972 66.9
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1169.5 970 64.5
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 0.0e+00 1168.7 1009 62.9
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1168.7 988 65.2
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1167.1 974 65.1
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1165.6 964 68.2
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1164.8 959 67.5
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1163.7 959 66.7
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1161.4 950 66.8
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1160.6 968 69.3
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1158.7 950 65.5
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1156.4 949 68.0
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 0.0e+00 1155.6 1015 63.5
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1152.5 962 66.9
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1150.6 948 66.7
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 0.0e+00 1150.6 977 65.2
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 0.0e+00 1139.8 999 64.2
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 0.0e+00 1139.4 964 66.4
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 0.0e+00 1139.0 950 67.5
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1134.4 947 65.2
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 0.0e+00 1133.2 981 64.8
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1132.9 1014 63.0
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1125.2 1001 62.8
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1122.1 952 65.1
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1121.7 943 67.7
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 0.0e+00 1117.8 1013 62.0
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 0.0e+00 1114.4 1018 62.9
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1113.2 965 64.7
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1111.7 958 64.1
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1104.0 977 63.4
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1103.6 947 64.3
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1100.1 960 64.9
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1099.7 958 63.0
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1096.6 961 64.6
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1090.9 943 64.5
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1087.0 968 64.9
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1081.2 981 62.6
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1077.8 964 62.3
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 0.0e+00 1077.0 983 61.2
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 1.3e-311 1073.2 949 62.2
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 3.8e-310 1068.1 964 62.7
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 9.4e-309 1063.5 964 62.0
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 6.1e-308 1060.8 1001 60.6
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 7.9e-308 1060.4 955 62.7
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 1.4e-307 1059.7 955 61.3
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 5.2e-307 1057.7 965 60.8
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 4.1e-304 1048.1 869 66.9
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 5.3e-304 1047.7 962 60.5
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 1.7e-302 1042.7 956 61.3
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 3.6e-300 1035.0 967 60.2
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 4.0e-299 1031.6 960 60.7
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 9.7e-298 1026.9 961 60.6
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 3.7e-297 1025.0 955 60.4
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 8.2e-297 1023.8 948 59.6
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 3.1e-296 1021.9 948 59.5
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 3.1e-296 1021.9 948 59.5
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 5.3e-296 1021.1 946 59.5
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 2.0e-295 1019.2 953 59.7
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.8e-291 1006.1 953 59.2
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 4.1e-288 995.0 960 58.5
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 2.9e-286 988.8 983 58.4
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 6.1e-284 981.1 949 57.7
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 1.7e-273 946.4 1005 55.4
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.4e-272 943.3 955 56.1
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.4e-267 926.8 983 56.2
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 3.1e-267 925.6 956 56.3
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 3.7e-265 918.7 957 56.7
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 7.0e-264 914.4 955 56.6
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 2.8e-260 902.5 948 56.0
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 3.6e-260 902.1 876 58.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 1.8e-259 899.8 948 55.6
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 8.3e-257 891.0 949 55.1
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 8.3e-257 891.0 951 55.1
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 8.3e-257 891.0 951 55.1
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 1.1e-256 890.6 900 56.9
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 2.4e-256 889.4 952 55.5
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 5.4e-256 888.3 953 55.3
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 1.2e-255 887.1 952 55.4
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.5e-253 880.2 950 54.7
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 3.0e-246 855.9 772 60.2
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 2.6e-234 816.2 988 49.6
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 3.7e-204 716.1 843 50.7
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 2.7e-183 646.7 603 62.2
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 7.2e-168 595.5 981 40.6
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 3.5e-162 576.6 506 62.5
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 6.2e-151 539.3 831 39.7
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.2e-135 488.4 638 45.1
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 7.6e-133 479.2 805 38.3
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 4.9e-132 476.5 474 57.2
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 3.7e-95 354.0 865 29.1
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 3.1e-94 350.9 782 31.8
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 4.7e-82 310.5 371 52.8
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 4.1e-78 297.4 865 27.7
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 1.6e-66 258.8 518 37.6
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 6.7e-65 253.4 329 44.7
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 4.8e-63 247.3 315 47.0
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.2e-53 216.1 172 64.0
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 6.6e-44 183.7 402 40.3
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 8.9e-25 120.2 67 80.6
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 1.9e-22 112.5 80 67.5
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 4.7e-18 97.8 90 57.8
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 6.2e-18 97.4 90 57.8
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.1e-17 95.1 154 40.3
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 2.0e-16 92.4 66 69.7
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 2.9e-15 88.6 188 42.0
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 3.8e-15 88.2 90 56.7
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 4.9e-15 87.8 90 56.7
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 3.0e-12 78.6 116 44.8
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.5e-08 66.2 35 85.7
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 1.5e-08 66.2 186 23.7
ATR0705G066 Amborella trichopoda HOM05D004669 ORTHO05D005767 3.4e-08 65.1 177 27.1
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 9.9e-08 63.5 179 28.5
Ciclev10024861m.g Citrus clementina HOM05D004669 ORTHO05D005767 1.3e-07 63.2 177 27.7
Sc12g0008880 Simmondsia chinensis HOM05D004669 ORTHO05D005767 1.3e-07 63.2 177 27.1
BcaC02g11353 Brassica carinata HOM05D000836 ORTHO05D000709 1.7e-07 62.8 183 25.1
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 2.2e-07 62.4 177 27.1
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 2.2e-07 62.4 177 27.7
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 2.9e-07 62.0 161 27.3
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 2.9e-07 62.0 177 27.7
BcaB02g10491 Brassica carinata HOM05D000836 ORTHO05D000709 3.8e-07 61.6 179 26.8
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 8.4e-07 60.5 165 28.5
Hund06583 Selenicereus undatus HOM05D004669 ORTHO05D005767 8.4e-07 60.5 120 32.5
BcaB01g03965 Brassica carinata HOM05D000836 ORTHO05D000709 1.1e-06 60.1 179 25.7
COL.COLO4_12887 Corchorus olitorius HOM05D004669 ORTHO05D005767 1.1e-06 60.1 177 28.2
Sp4g15040 Schrenkiella parvula HOM05D000836 ORTHO05D000709 1.1e-06 60.1 181 25.4
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 1.1e-06 60.1 165 29.1
A05p12910 Brassica napus HOM05D000836 ORTHO05D000709 1.9e-06 59.3 179 25.7
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 1.9e-06 59.3 154 29.9
Cre02.g112200 Chlamydomonas reinhardtii HOM05D015581 ORTHO05D044314 2.4e-06 58.9 120 29.2
Cre04.g227900 Chlamydomonas reinhardtii HOM05D014335 ORTHO05D015846 2.4e-06 58.9 113 31.9
MBI15_g26777_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 2.4e-06 58.9 47 63.8
SGA_v2.0_scaffold5G02661 Striga asiatica HOM05D004669 ORTHO05D005767 2.4e-06 58.9 122 33.6
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 3.2e-06 58.5 159 28.3
AL4G28140 Arabidopsis lyrata HOM05D000836 ORTHO05D000709 3.2e-06 58.5 183 25.7
C04p16930 Brassica napus HOM05D000836 ORTHO05D000709 3.2e-06 58.5 182 24.7
Gohir.A09G084900 Gossypium hirsutum HOM05D004669 ORTHO05D005767 3.2e-06 58.5 180 28.9
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.2e-06 58.5 235 22.1
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.2e-06 58.5 235 22.1
MBI15_g28715_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 4.2e-06 58.2 39 74.4
Pp3c19_4130 Physcomitrium patens HOM05D002668 ORTHO05D003295 4.2e-06 58.2 157 28.0
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 4.2e-06 58.2 200 24.5
Gohir.D09G084800 Gossypium hirsutum HOM05D004669 ORTHO05D005767 5.4e-06 57.8 180 28.9
Gorai.006G100800 Gossypium raimondii HOM05D004669 ORTHO05D005767 5.4e-06 57.8 180 28.9
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 5.4e-06 57.8 152 30.3
QL02p061718 Quercus lobata HOM05D005151 ORTHO05D006322 5.4e-06 57.8 131 26.7
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 5.4e-06 57.8 154 29.9
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 5.4e-06 57.8 154 29.9
AagrBONN_evm.TU.Sc2ySwM_362.2826 Anthoceros agrestis HOM05D014975 ORTHO05D016505 7.1e-06 57.4 205 25.9
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 7.1e-06 57.4 177 26.0
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 7.1e-06 57.4 177 26.0
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 7.1e-06 57.4 162 31.5
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 7.1e-06 57.4 131 29.0
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 7.1e-06 57.4 203 23.6
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 7.1e-06 57.4 163 30.7
C04p62300 Brassica napus HOM05D000836 ORTHO05D000709 9.3e-06 57.0 181 26.5
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 9.3e-06 57.0 161 30.4
Thhalv10016303m.g Eutrema salsugineum HOM05D000836 ORTHO05D000709 9.3e-06 57.0 181 23.8
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 9.3e-06 57.0 203 22.2
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 9.3e-06 57.0 203 22.2
Sabra02G0184200 Salix brachista HOM05D000836 ORTHO05D000709 9.3e-06 57.0 158 26.6
SMO356G0696 Selaginella moellendorffii HOM05D004669 ORTHO05D005767 9.3e-06 57.0 165 27.9


User provided reference genes

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