Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.2e-282 973.0 533 100.0
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.6e-276 954.9 526 99.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 2.4e-237 825.5 512 85.2
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 4.7e-233 811.2 536 81.0
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.3e-231 805.1 526 84.4
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 8.8e-224 780.4 527 77.0
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 9.7e-223 776.9 527 76.9
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.1e-221 773.5 528 75.9
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.1e-221 771.9 504 80.2
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.0e-221 770.8 528 75.4
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 2.9e-219 765.4 593 72.0
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 6.1e-217 757.7 526 76.4
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.0e-216 755.4 526 74.7
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 5.2e-216 754.6 526 74.7
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.7e-214 749.6 526 74.5
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.2e-214 749.2 504 77.6
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.1e-213 746.9 513 76.4
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.8e-213 746.1 526 75.9
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 1.6e-212 743.0 512 76.2
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 3.5e-212 741.9 526 75.1
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 4.5e-212 741.5 526 74.0
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 1.1e-210 736.9 509 75.2
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.1e-210 736.9 504 75.4
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.5e-210 735.7 509 73.1
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 9.4e-210 733.8 509 74.3
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 3.6e-209 731.9 511 74.6
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.7e-209 731.5 504 75.2
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 6.1e-209 731.1 513 74.9
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 2.6e-207 725.7 539 71.2
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 3.4e-207 725.3 504 75.6
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 4.4e-207 724.9 527 72.7
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 7.5e-207 724.2 511 73.6
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 2.2e-206 722.6 529 73.0
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.0e-204 716.1 527 73.6
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.0e-203 713.8 526 71.1
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.9e-203 712.2 510 72.2
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 5.5e-202 708.0 509 71.1
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.0e-200 703.7 508 72.6
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 1.4e-200 703.4 531 72.9
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.8e-200 703.0 526 70.0
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.8e-200 703.0 524 70.4
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 2.3e-200 702.6 509 72.7
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 6.8e-200 701.0 524 70.8
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 6.8e-200 701.0 526 70.7
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.0e-199 699.5 530 76.0
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 2.6e-199 699.1 523 70.7
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 3.7e-198 695.3 527 70.6
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 8.3e-198 694.1 524 70.4
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 2.0e-196 689.5 504 73.2
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 2.7e-196 689.1 526 70.0
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.7e-196 689.1 502 72.3
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 7.8e-196 687.6 502 72.3
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.9e-194 682.9 513 70.4
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 4.3e-194 681.8 524 70.4
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 1.2e-193 680.2 524 68.9
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.6e-193 678.7 526 68.8
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.6e-193 678.7 524 69.3
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 6.1e-193 677.9 526 68.4
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.0e-192 677.2 524 70.2
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-192 676.8 511 69.3
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.4e-192 676.8 511 69.3
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.4e-192 676.8 511 69.3
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.4e-192 676.8 476 74.4
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.8e-192 676.4 504 70.8
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 2.3e-192 676.0 539 67.5
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.1e-192 675.6 553 66.2
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 4.0e-192 675.2 511 71.2
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 6.8e-192 674.5 504 72.0
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 1.2e-191 673.7 524 68.7
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.5e-191 673.3 511 69.1
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 2.6e-191 672.5 533 68.3
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 5.8e-191 671.4 511 70.5
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.5e-191 671.0 526 68.6
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.4e-189 666.8 526 67.1
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 2.4e-189 666.0 512 68.4
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 3.2e-189 665.6 502 70.7
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 3.2e-189 665.6 511 67.5
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 5.4e-189 664.8 508 69.9
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 5.4e-189 664.8 506 69.8
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 9.2e-189 664.1 509 69.4
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.2e-188 663.7 510 68.2
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.7e-188 662.5 509 69.5
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 2.7e-188 662.5 509 69.4
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 6.0e-188 661.4 522 66.7
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 5.6e-186 654.8 514 67.3
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.2e-185 653.7 509 69.0
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 4.7e-185 651.7 512 66.2
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 4.7e-185 651.7 504 69.2
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 9.8e-183 644.0 565 63.5
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-181 640.6 511 66.9
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.9e-181 639.8 511 66.9
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 4.1e-181 638.6 524 66.0
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 9.2e-181 637.5 524 66.4
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.6e-180 636.7 510 67.3
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 2.7e-180 636.0 509 67.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.7e-180 636.0 504 67.7
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.3e-179 633.6 528 65.9
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.0e-179 632.5 504 67.3
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.0e-179 632.5 504 67.3
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.0e-179 632.5 504 67.9
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 6.6e-179 631.3 504 67.7
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.1e-177 626.3 504 66.9
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.8e-177 625.9 504 66.9
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.4e-176 623.6 504 67.7
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 2.4e-173 612.8 427 76.1
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.6e-172 610.1 515 63.7
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 5.1e-171 605.1 510 62.7
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 1.2e-169 600.5 526 61.2
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 8.1e-169 597.8 535 62.1
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 4.9e-166 588.6 518 59.8
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.6e-161 573.5 519 63.4
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.1e-157 560.8 397 74.6
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.1e-156 556.6 406 71.9
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 9.0e-152 541.2 406 71.2
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 9.9e-151 537.7 441 66.0
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 7.9e-148 528.1 510 57.6
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 5.1e-147 525.4 403 68.7
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.3e-145 520.8 505 58.8
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.4e-136 490.0 532 54.1
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.2e-135 487.6 308 86.0
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 3.4e-127 459.5 513 49.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 7.7e-127 458.4 399 63.2
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.0e-119 433.7 421 58.2
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 2.0e-119 433.7 514 51.6
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 2.7e-116 423.3 313 71.9
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 6.7e-115 418.7 513 45.2
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.8e-113 413.3 306 71.9
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 2.8e-113 413.3 306 71.9
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 2.8e-113 413.3 400 55.5
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 5.3e-112 409.1 361 60.4
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.8e-96 357.5 212 97.2
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.1e-93 348.2 489 42.5
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 1.2e-92 344.7 533 40.5
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 8.6e-86 322.0 325 59.4
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.0e-75 288.5 187 79.1
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.6e-69 266.2 180 76.1
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.7e-65 254.6 212 65.6
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 4.1e-64 250.0 197 64.5
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.1e-61 241.9 214 60.7
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-58 231.9 168 72.0
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 3.5e-55 220.3 493 32.3
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.1e-53 215.3 180 63.9
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 5.2e-51 206.5 180 61.1
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 8.9e-51 205.7 174 63.8
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 2.9e-49 200.7 151 70.2
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 8.4e-49 199.1 151 70.2
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 6.0e-47 193.0 557 29.8
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.5e-45 188.3 128 77.3
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.4e-43 181.8 133 68.4
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 3.2e-40 170.6 117 76.1
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 6.0e-39 166.4 148 64.2
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.6e-36 158.3 102 78.4
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 2.6e-34 151.0 485 30.1
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 4.6e-31 140.2 92 79.3
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 4.6e-31 140.2 92 79.3
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 4.6e-31 140.2 92 79.3
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 3.3e-29 134.0 92 76.1
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.1e-28 131.3 185 44.3
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 8.1e-28 129.4 101 68.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 3.4e-26 124.0 113 60.2
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.9e-24 118.2 94 71.3
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.5e-21 107.8 98 56.1
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 3.3e-21 107.5 94 57.4
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 9.6e-21 105.9 59 86.4
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 8.2e-20 102.8 94 56.4
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.8e-19 101.7 69 69.6
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.0e-17 95.9 59 79.7
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.8e-17 94.0 58 81.0
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.0e-14 85.9 73 56.2
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 1.3e-12 79.0 83 47.0
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.6e-12 78.6 51 70.6
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 4.8e-12 77.0 82 48.8
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 2.9e-09 67.8 47 76.6
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 4.2e-08 63.9 48 70.8
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 7.2e-08 63.2 118 35.6
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 7.9e-07 59.7 47 61.7


User provided reference genes

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